File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF631JSV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF631JSV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF631JSV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF631JSV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF631JSV.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF002OWA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF002OWA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF002OWA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF002OWA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF002OWA.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.692M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.692M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.692M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.692M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF631JSV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF631JSV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF631JSV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF631JSV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF631JSV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF631JSV.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF002OWA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF002OWA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF002OWA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF002OWA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF002OWA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF002OWA.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF631JSV.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/c83df047-2447-401d-8b12-ab58c6e3a85b/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.692M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.692M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5148553921270218191 chip.macs2_signal_track_pooled -4866951938450380407 BW FC 5148553921270218191->-4866951938450380407 794679719409611268 BW p-val 5148553921270218191->794679719409611268 -2148849962320553175 chip.call_peak_pooled -1653794777521072056 Peak (bfilt) -2148849962320553175->-1653794777521072056 359484850544969541 Peak -2148849962320553175->359484850544969541 5531659051599653868 chip.idr_ppr 359484850544969541->5531659051599653868 196542890306451803 chip.idr 359484850544969541->196542890306451803 -3706353838482925630 chip.overlap 359484850544969541->-3706353838482925630 -6462702612552919724 chip.overlap_ppr 359484850544969541->-6462702612552919724 3573752114684574401 chip.pool_ta -7927569272372770881 TAG-ALIGN 3573752114684574401->-7927569272372770881 -7927569272372770881->5148553921270218191 -7927569272372770881->-2148849962320553175 -7927569272372770881->5531659051599653868 -7927569272372770881->196542890306451803 -7927569272372770881->-3706353838482925630 -7927569272372770881->-6462702612552919724 449908039533465028 chip.call_peak 9209072001568282381 Peak (bfilt) 449908039533465028->9209072001568282381 5436888815774322119 Peak 449908039533465028->5436888815774322119 5436888815774322119->196542890306451803 5436888815774322119->-3706353838482925630 -3961646395902422627 chip.reproducibility_overlap 5436888815774322119->-3961646395902422627 -4785586697415154414 chip.reproducibility_idr 5436888815774322119->-4785586697415154414 1646162550110839771 chip.bam2ta 7010047258886090886 TAG-ALIGN 1646162550110839771->7010047258886090886 7010047258886090886->3573752114684574401 7010047258886090886->449908039533465028 -8418757376931911146 chip.macs2_signal_track 7010047258886090886->-8418757376931911146 7010047258886090886->5531659051599653868 7010047258886090886->-3961646395902422627 7010047258886090886->-4785586697415154414 7010047258886090886->-6462702612552919724 2555543775438172472 chip.filter 3664389779973114094 SAMstats QC 2555543775438172472->3664389779973114094 -7993105703205743602 Filt/deduped BAM 2555543775438172472->-7993105703205743602 -8827800893696676433 LibCmplx QC 2555543775438172472->-8827800893696676433 -7993105703205743602->1646162550110839771 9051372486301224319 chip.jsd -7993105703205743602->9051372486301224319 -1498072257811399962 chip.align -8090314568865394049 SAMstats QC -1498072257811399962->-8090314568865394049 -2197577849398958708 BAM -1498072257811399962->-2197577849398958708 -2197577849398958708->2555543775438172472 9115674594038207864 chip.xcor -9107555602250793753 XCOR Plot 9115674594038207864->-9107555602250793753 -5921596619471003323 BW FC -8418757376931911146->-5921596619471003323 7484027522222736994 BW p-val -8418757376931911146->7484027522222736994 -4890398561434586802 FASTQ R1 (1) -4890398561434586802->-1498072257811399962 -4890398561434586802->9115674594038207864 1658142811244272506 FASTQ R2 (1) 1658142811244272506->-1498072257811399962 -8824449722877277250 chip.call_peak -3962151795105113325 Peak (bfilt) -8824449722877277250->-3962151795105113325 -5922507735749053406 Peak -8824449722877277250->-5922507735749053406 -5922507735749053406->196542890306451803 -5922507735749053406->-3706353838482925630 -5922507735749053406->-3961646395902422627 -5922507735749053406->-4785586697415154414 5936646242523961187 chip.bam2ta 9015333018679961162 TAG-ALIGN 5936646242523961187->9015333018679961162 9015333018679961162->3573752114684574401 9015333018679961162->-8824449722877277250 1348892699526355737 chip.macs2_signal_track 9015333018679961162->1348892699526355737 9015333018679961162->5531659051599653868 9015333018679961162->-3961646395902422627 9015333018679961162->-4785586697415154414 9015333018679961162->-6462702612552919724 -5010610484436173529 chip.filter 2568011937268536694 SAMstats QC -5010610484436173529->2568011937268536694 -4853731391417856419 Filt/deduped BAM -5010610484436173529->-4853731391417856419 -5410231850430975124 LibCmplx QC -5010610484436173529->-5410231850430975124 -4853731391417856419->5936646242523961187 -4853731391417856419->9051372486301224319 5934809221660222178 chip.align -352518970324332290 SAMstats QC 5934809221660222178->-352518970324332290 -2151931007238668708 BAM 5934809221660222178->-2151931007238668708 -2151931007238668708->-5010610484436173529 5070626630863666512 chip.xcor -1472385396414202433 XCOR Plot 5070626630863666512->-1472385396414202433 5547849035511732567 BW FC 1348892699526355737->5547849035511732567 -1062191271735900457 BW p-val 1348892699526355737->-1062191271735900457 5642721706342655100 FASTQ R1 (1) 5642721706342655100->5934809221660222178 5642721706342655100->5070626630863666512 -1762914079765188800 FASTQ R2 (1) -1762914079765188800->5934809221660222178 2912876261826033524 chip.pool_ta_ctl 3599124907884150396 TAG-ALIGN 2912876261826033524->3599124907884150396 3599124907884150396->5148553921270218191 3599124907884150396->-2148849962320553175 3599124907884150396->449908039533465028 3599124907884150396->-8418757376931911146 3599124907884150396->-8824449722877277250 3599124907884150396->1348892699526355737 3599124907884150396->5531659051599653868 3599124907884150396->-3961646395902422627 3599124907884150396->-4785586697415154414 3599124907884150396->-6462702612552919724 -7072343027217262471 chip.bam2ta_ctl 5043421916004837704 TAG-ALIGN -7072343027217262471->5043421916004837704 5043421916004837704->2912876261826033524 -7965189531519730488 Filt/deduped BAM -7965189531519730488->-7072343027217262471 -7965189531519730488->9051372486301224319 -158246044861535563 chip.bam2ta_ctl 6821363517799710087 TAG-ALIGN -158246044861535563->6821363517799710087 6821363517799710087->2912876261826033524 -1880512179175352978 Filt/deduped BAM -1880512179175352978->-158246044861535563 -1880512179175352978->9051372486301224319 -4706014796433227391 chip.bam2ta_ctl -8910993388372224244 TAG-ALIGN -4706014796433227391->-8910993388372224244 -8910993388372224244->2912876261826033524 -3340931270885519750 Filt/deduped BAM -3340931270885519750->-4706014796433227391 -3340931270885519750->9051372486301224319 -752396381107221280 chip.bam2ta_ctl -4337308172801280085 TAG-ALIGN -752396381107221280->-4337308172801280085 -4337308172801280085->2912876261826033524 2850303324395324021 Filt/deduped BAM 2850303324395324021->-752396381107221280 2850303324395324021->9051372486301224319 204171804398762534 chip.bam2ta_ctl -2945862364892253501 TAG-ALIGN 204171804398762534->-2945862364892253501 -2945862364892253501->2912876261826033524 -8485433275052299074 Filt/deduped BAM -8485433275052299074->204171804398762534 -8485433275052299074->9051372486301224319 -7786899023455046044 chip.bam2ta_ctl -5199502084052098382 TAG-ALIGN -7786899023455046044->-5199502084052098382 -5199502084052098382->2912876261826033524 -5890763309881399816 Filt/deduped BAM -5890763309881399816->-7786899023455046044 -5890763309881399816->9051372486301224319 -8196795419563445699 chip.bam2ta_ctl 7842320663412566492 TAG-ALIGN -8196795419563445699->7842320663412566492 7842320663412566492->2912876261826033524 -2752694182547295326 Filt/deduped BAM -2752694182547295326->-8196795419563445699 -2752694182547295326->9051372486301224319 -8768578044145780392 chip.bam2ta_ctl 7319951244874650971 TAG-ALIGN -8768578044145780392->7319951244874650971 7319951244874650971->2912876261826033524 76052067424999017 Filt/deduped BAM 76052067424999017->-8768578044145780392 76052067424999017->9051372486301224319 2436806613774876287 chip.bam2ta_ctl 1129851556203453300 TAG-ALIGN 2436806613774876287->1129851556203453300 1129851556203453300->2912876261826033524 2953697892047656078 Filt/deduped BAM 2953697892047656078->2436806613774876287 2953697892047656078->9051372486301224319 9162180466962935118 chip.bam2ta_ctl 8922647727824249188 TAG-ALIGN 9162180466962935118->8922647727824249188 8922647727824249188->2912876261826033524 2744125677316453924 Filt/deduped BAM 2744125677316453924->9162180466962935118 2744125677316453924->9051372486301224319 -8570324550563681816 chip.bam2ta_ctl 3331298888000681542 TAG-ALIGN -8570324550563681816->3331298888000681542 3331298888000681542->2912876261826033524 21304623286753249 Filt/deduped BAM 21304623286753249->-8570324550563681816 21304623286753249->9051372486301224319 4352313278610138770 chip.bam2ta_ctl -1915374618713982420 TAG-ALIGN 4352313278610138770->-1915374618713982420 -1915374618713982420->2912876261826033524 -4454008887843620258 Filt/deduped BAM -4454008887843620258->4352313278610138770 -4454008887843620258->9051372486301224319 -749971723583012871 chip.bam2ta_ctl -8318494613967929378 TAG-ALIGN -749971723583012871->-8318494613967929378 -8318494613967929378->2912876261826033524 -1110434200648964986 Filt/deduped BAM -1110434200648964986->-749971723583012871 -1110434200648964986->9051372486301224319 896719519532105530 chip.bam2ta_ctl 5603592366533509789 TAG-ALIGN 896719519532105530->5603592366533509789 5603592366533509789->2912876261826033524 4217287365453688867 Filt/deduped BAM 4217287365453688867->896719519532105530 4217287365453688867->9051372486301224319 4161251843154690669 chip.bam2ta_ctl 2228779065615084268 TAG-ALIGN 4161251843154690669->2228779065615084268 2228779065615084268->2912876261826033524 8531419098942401482 Filt/deduped BAM 8531419098942401482->4161251843154690669 8531419098942401482->9051372486301224319 -688879089756772488 chip.bam2ta_ctl 8432905772423865808 TAG-ALIGN -688879089756772488->8432905772423865808 8432905772423865808->2912876261826033524 5461481253463340524 Filt/deduped BAM 5461481253463340524->-688879089756772488 5461481253463340524->9051372486301224319 -3431347743170929660 chip.bam2ta_ctl 8079044900611532877 TAG-ALIGN -3431347743170929660->8079044900611532877 8079044900611532877->2912876261826033524 -1008996125527492462 Filt/deduped BAM -1008996125527492462->-3431347743170929660 -1008996125527492462->9051372486301224319 -7947735289841174421 chip.bam2ta_ctl -8873403368776157441 TAG-ALIGN -7947735289841174421->-8873403368776157441 -8873403368776157441->2912876261826033524 8728511694268179292 Filt/deduped BAM 8728511694268179292->-7947735289841174421 8728511694268179292->9051372486301224319 5969927833612456565 chip.bam2ta_ctl -3481154915057317674 TAG-ALIGN 5969927833612456565->-3481154915057317674 -3481154915057317674->2912876261826033524 9186517265623905824 Filt/deduped BAM 9186517265623905824->5969927833612456565 9186517265623905824->9051372486301224319 -3899565676748435465 chip.bam2ta_ctl 2281182094803977370 TAG-ALIGN -3899565676748435465->2281182094803977370 2281182094803977370->2912876261826033524 -6728317937276106719 Filt/deduped BAM -6728317937276106719->-3899565676748435465 -6728317937276106719->9051372486301224319 -386870654239644424 chip.bam2ta_ctl -6261886820242776753 TAG-ALIGN -386870654239644424->-6261886820242776753 -6261886820242776753->2912876261826033524 5350454568378637356 Filt/deduped BAM 5350454568378637356->-386870654239644424 5350454568378637356->9051372486301224319 6702704880249825 chip.bam2ta_ctl 229587448759467618 TAG-ALIGN 6702704880249825->229587448759467618 229587448759467618->2912876261826033524 8269556234801247465 Filt/deduped BAM 8269556234801247465->6702704880249825 8269556234801247465->9051372486301224319 -5874729014795847385 chip.bam2ta_ctl 9104878209516631109 TAG-ALIGN -5874729014795847385->9104878209516631109 9104878209516631109->2912876261826033524 3984318838946823511 Filt/deduped BAM 3984318838946823511->-5874729014795847385 3984318838946823511->9051372486301224319 8655697470631781624 chip.bam2ta_ctl -3827395462917557687 TAG-ALIGN 8655697470631781624->-3827395462917557687 -3827395462917557687->2912876261826033524 3965144446279797971 Filt/deduped BAM 3965144446279797971->8655697470631781624 3965144446279797971->9051372486301224319 -7399055661832090229 IDR Plot ppr 5531659051599653868->-7399055661832090229 -8147891279726240711 IDR Peak ppr 5531659051599653868->-8147891279726240711 -8147891279726240711->-4785586697415154414 -6390144257623266596 IDR Plot rep1_vs_rep2 196542890306451803->-6390144257623266596 5313308628240544196 IDR NPeak rep1_vs_rep2 196542890306451803->5313308628240544196 5313308628240544196->-4785586697415154414 -7132338313186364022 Overlap Peak rep1_vs_rep2 -3706353838482925630->-7132338313186364022 -7132338313186364022->-3961646395902422627 -8065089041530120511 Overlap Peak optimal -3961646395902422627->-8065089041530120511 828632032705276213 Overlap reproducibility -3961646395902422627->828632032705276213 2591144425538100204 IDR Peak optimal -4785586697415154414->2591144425538100204 -9222407590591459860 IDR reproducibility -4785586697415154414->-9222407590591459860 -406777914131856732 Overlap Peak ppr -6462702612552919724->-406777914131856732 -406777914131856732->-3961646395902422627 8148048241655139172 JSD Plot 9051372486301224319->8148048241655139172

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.692M.pval.signal.bigwig?Expires=1601334668&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=2cI7FPFN759oAPowuO%2FEVIvQ42qeoD6twJZoj%2FJIUtSfVWl0o22fCrfzM5d7t3EV3mETR1D0aUYy7aMvfE8RVeMad4%2FBGUY6PKI1DUmjBcfpIwOKCJfSb07grFwdG8RcDbvWxhztP5Yk%2FqtmusxwebyDUWg3uw19g6WBNVpJp%2BRUCsHXKWeT2xIOQO6WeEkzGwCphonUZSoP%2F6XYDkzhMV9zR2l29SRPGH03OdlQ%2BbC9KnSr1dP0dwmM%2B3AVeaMhn%2FOSbfbWsC6i50ytfn8qETfO0rAs%2F88HZ2W7Alv8aEEaPrGw1RQ196Erl%2BMe5wlZ4fe4r3iizZZ7O89Z%2FI67%2BA%3D%3D"
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