File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF859HOC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF859HOC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF859HOC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF859HOC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF859HOC.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF711PUH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF711PUH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF711PUH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF711PUH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF711PUH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.548M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.548M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.548M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF859HOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF859HOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF859HOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF859HOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF859HOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF859HOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF859HOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF859HOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF711PUH.crop_101-2bp.nodup.pr1_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF711PUH.crop_101-2bp.nodup.pr1_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF711PUH.crop_101-2bp.nodup.pr1_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF711PUH.crop_101-2bp.nodup.pr1_x_ctl.pooled.275M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF711PUH.crop_101-2bp.nodup.pr2_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF711PUH.crop_101-2bp.nodup.pr2_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF711PUH.crop_101-2bp.nodup.pr2_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF711PUH.crop_101-2bp.nodup.pr2_x_ctl.pooled.275M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.548M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF859HOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF859HOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF859HOC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF859HOC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF859HOC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF859HOC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF859HOC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF859HOC.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF711PUH.crop_101-2bp.nodup.pr1_x_ctl.pooled.275M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF711PUH.crop_101-2bp.nodup.pr2_x_ctl.pooled.275M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF711PUH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF711PUH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF711PUH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF711PUH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF711PUH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF711PUH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF859HOC.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/1a06da5b-4fe0-4778-9a61-48a861f1f6a1/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.548M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.548M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF859HOC.crop_101-2bp.nodup_x_ctl.pooled.273M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0fe0025a-0f20-4ae1-baee-5a9a49daf13a/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF711PUH.crop_101-2bp.nodup_x_ctl.pooled.275M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6528053253547128695 chip.macs2_signal_track_pooled -1971238137789642210 BW FC 6528053253547128695->-1971238137789642210 -8982492696588867085 BW p-val 6528053253547128695->-8982492696588867085 8307498578489838419 chip.call_peak_pooled -5022309045614330146 Peak (bfilt) 8307498578489838419->-5022309045614330146 -7910753798943315911 Peak 8307498578489838419->-7910753798943315911 5214682996487691166 chip.idr_ppr -7910753798943315911->5214682996487691166 -7907966937080164539 chip.idr -7910753798943315911->-7907966937080164539 3061334508239858429 chip.overlap -7910753798943315911->3061334508239858429 953951866390802663 chip.overlap_ppr -7910753798943315911->953951866390802663 -8068085323804656788 chip.pool_ta -2630905923699689283 TAG-ALIGN -8068085323804656788->-2630905923699689283 -2630905923699689283->6528053253547128695 -2630905923699689283->8307498578489838419 -2630905923699689283->5214682996487691166 -2630905923699689283->-7907966937080164539 -2630905923699689283->3061334508239858429 -2630905923699689283->953951866390802663 5024743821573585013 chip.call_peak 3563055764108637600 Peak (bfilt) 5024743821573585013->3563055764108637600 2622743669492873887 Peak 5024743821573585013->2622743669492873887 2622743669492873887->-7907966937080164539 2622743669492873887->3061334508239858429 -2444321105193642407 chip.reproducibility_overlap 2622743669492873887->-2444321105193642407 -1526148704852209670 chip.reproducibility_idr 2622743669492873887->-1526148704852209670 256831708930501474 chip.bam2ta 3132524293629633559 TAG-ALIGN 256831708930501474->3132524293629633559 3132524293629633559->-8068085323804656788 3132524293629633559->5024743821573585013 -1071621499725652545 chip.macs2_signal_track 3132524293629633559->-1071621499725652545 3132524293629633559->5214682996487691166 3132524293629633559->-2444321105193642407 3132524293629633559->-1526148704852209670 3132524293629633559->953951866390802663 -6597984466981358097 chip.filter -5797868592061334893 SAMstats QC -6597984466981358097->-5797868592061334893 9125601184644018469 Filt/deduped BAM -6597984466981358097->9125601184644018469 -1497327974260989711 LibCmplx QC -6597984466981358097->-1497327974260989711 9125601184644018469->256831708930501474 8658777209919939970 chip.jsd 9125601184644018469->8658777209919939970 853286352398801006 chip.align -8724818587026703815 SAMstats QC 853286352398801006->-8724818587026703815 7173231429434715661 BAM 853286352398801006->7173231429434715661 7173231429434715661->-6597984466981358097 -5644981289519954952 chip.xcor -2668674982612181960 XCOR Plot -5644981289519954952->-2668674982612181960 -6982876277645263082 BW FC -1071621499725652545->-6982876277645263082 8490676606682324341 BW p-val -1071621499725652545->8490676606682324341 656401847148013704 FASTQ R1 (1) 656401847148013704->853286352398801006 656401847148013704->-5644981289519954952 -1157920136937785210 FASTQ R2 (1) -1157920136937785210->853286352398801006 -7003033382564126373 chip.call_peak 3810182719136773450 Peak (bfilt) -7003033382564126373->3810182719136773450 3345009208798286884 Peak -7003033382564126373->3345009208798286884 3345009208798286884->-7907966937080164539 3345009208798286884->3061334508239858429 3345009208798286884->-2444321105193642407 3345009208798286884->-1526148704852209670 2380200380033923147 chip.bam2ta 4466185682468887285 TAG-ALIGN 2380200380033923147->4466185682468887285 4466185682468887285->-8068085323804656788 4466185682468887285->-7003033382564126373 8349736800507197451 chip.macs2_signal_track 4466185682468887285->8349736800507197451 4466185682468887285->5214682996487691166 4466185682468887285->-2444321105193642407 4466185682468887285->-1526148704852209670 4466185682468887285->953951866390802663 7670925124105876851 chip.filter 4191627047173812156 SAMstats QC 7670925124105876851->4191627047173812156 -7577222243051994319 Filt/deduped BAM 7670925124105876851->-7577222243051994319 -6618217485919984985 LibCmplx QC 7670925124105876851->-6618217485919984985 -7577222243051994319->2380200380033923147 -7577222243051994319->8658777209919939970 4680181936682952545 chip.align -4030215833793754380 SAMstats QC 4680181936682952545->-4030215833793754380 -1253134245071641284 BAM 4680181936682952545->-1253134245071641284 -1253134245071641284->7670925124105876851 -2204889923139636026 chip.xcor -3292484766172278536 XCOR Plot -2204889923139636026->-3292484766172278536 -5359036450360471831 BW FC 8349736800507197451->-5359036450360471831 6248243180994987023 BW p-val 8349736800507197451->6248243180994987023 -8411822097119067319 FASTQ R1 (1) -8411822097119067319->4680181936682952545 -8411822097119067319->-2204889923139636026 3964401341543851149 FASTQ R2 (1) 3964401341543851149->4680181936682952545 6545849526483966447 chip.pool_ta_ctl 4659968852924405596 TAG-ALIGN 6545849526483966447->4659968852924405596 4659968852924405596->6528053253547128695 4659968852924405596->8307498578489838419 4659968852924405596->5024743821573585013 4659968852924405596->-1071621499725652545 4659968852924405596->-7003033382564126373 4659968852924405596->8349736800507197451 4659968852924405596->5214682996487691166 4659968852924405596->-2444321105193642407 4659968852924405596->-1526148704852209670 4659968852924405596->953951866390802663 -9153741714935785880 chip.bam2ta_ctl -1139989299277476670 TAG-ALIGN -9153741714935785880->-1139989299277476670 -1139989299277476670->6545849526483966447 4582908646393750426 Filt/deduped BAM 4582908646393750426->-9153741714935785880 4582908646393750426->8658777209919939970 541350894828033603 chip.bam2ta_ctl -7082716461070939861 TAG-ALIGN 541350894828033603->-7082716461070939861 -7082716461070939861->6545849526483966447 -6902351063616851251 Filt/deduped BAM -6902351063616851251->541350894828033603 -6902351063616851251->8658777209919939970 -7335503219056921063 chip.bam2ta_ctl 8963371365473848563 TAG-ALIGN -7335503219056921063->8963371365473848563 8963371365473848563->6545849526483966447 -633164024806542618 Filt/deduped BAM -633164024806542618->-7335503219056921063 -633164024806542618->8658777209919939970 -3549270638362145676 chip.bam2ta_ctl -2118167558278801133 TAG-ALIGN -3549270638362145676->-2118167558278801133 -2118167558278801133->6545849526483966447 -3260804374791552568 Filt/deduped BAM -3260804374791552568->-3549270638362145676 -3260804374791552568->8658777209919939970 -2623250276212713669 chip.bam2ta_ctl -6816987149708039067 TAG-ALIGN -2623250276212713669->-6816987149708039067 -6816987149708039067->6545849526483966447 -1228775327151316920 Filt/deduped BAM -1228775327151316920->-2623250276212713669 -1228775327151316920->8658777209919939970 -2216090203897786777 chip.bam2ta_ctl -1361988948076660719 TAG-ALIGN -2216090203897786777->-1361988948076660719 -1361988948076660719->6545849526483966447 -5439747884254404109 Filt/deduped BAM -5439747884254404109->-2216090203897786777 -5439747884254404109->8658777209919939970 -1358216341941920742 chip.bam2ta_ctl 681037094605708522 TAG-ALIGN -1358216341941920742->681037094605708522 681037094605708522->6545849526483966447 1704077864716510998 Filt/deduped BAM 1704077864716510998->-1358216341941920742 1704077864716510998->8658777209919939970 8775544488118204289 chip.bam2ta_ctl -131835243189622377 TAG-ALIGN 8775544488118204289->-131835243189622377 -131835243189622377->6545849526483966447 610016177500673681 Filt/deduped BAM 610016177500673681->8775544488118204289 610016177500673681->8658777209919939970 -7920150912005365252 chip.bam2ta_ctl -7333914574787716610 TAG-ALIGN -7920150912005365252->-7333914574787716610 -7333914574787716610->6545849526483966447 -8306047017407805574 Filt/deduped BAM -8306047017407805574->-7920150912005365252 -8306047017407805574->8658777209919939970 7900879190779468600 chip.bam2ta_ctl -1674856994704719794 TAG-ALIGN 7900879190779468600->-1674856994704719794 -1674856994704719794->6545849526483966447 -8266307453627543475 Filt/deduped BAM -8266307453627543475->7900879190779468600 -8266307453627543475->8658777209919939970 -8416478399908892892 chip.bam2ta_ctl -5352412332587551135 TAG-ALIGN -8416478399908892892->-5352412332587551135 -5352412332587551135->6545849526483966447 -4028171119143238475 Filt/deduped BAM -4028171119143238475->-8416478399908892892 -4028171119143238475->8658777209919939970 5152923447144531725 chip.bam2ta_ctl -7810958452966256717 TAG-ALIGN 5152923447144531725->-7810958452966256717 -7810958452966256717->6545849526483966447 -690145316460773787 Filt/deduped BAM -690145316460773787->5152923447144531725 -690145316460773787->8658777209919939970 8400632178285486315 chip.bam2ta_ctl 2903999189295104782 TAG-ALIGN 8400632178285486315->2903999189295104782 2903999189295104782->6545849526483966447 -3716862332182554967 Filt/deduped BAM -3716862332182554967->8400632178285486315 -3716862332182554967->8658777209919939970 2867189539537053867 chip.bam2ta_ctl -5243057315408409110 TAG-ALIGN 2867189539537053867->-5243057315408409110 -5243057315408409110->6545849526483966447 5141968320195781390 Filt/deduped BAM 5141968320195781390->2867189539537053867 5141968320195781390->8658777209919939970 5275606421487670967 chip.bam2ta_ctl 2021477945198797957 TAG-ALIGN 5275606421487670967->2021477945198797957 2021477945198797957->6545849526483966447 -2670620119659252090 Filt/deduped BAM -2670620119659252090->5275606421487670967 -2670620119659252090->8658777209919939970 3817767553083913992 chip.bam2ta_ctl 7583065988857205256 TAG-ALIGN 3817767553083913992->7583065988857205256 7583065988857205256->6545849526483966447 -9020484399603688467 Filt/deduped BAM -9020484399603688467->3817767553083913992 -9020484399603688467->8658777209919939970 -6852231497086719084 chip.bam2ta_ctl 2857511333261581141 TAG-ALIGN -6852231497086719084->2857511333261581141 2857511333261581141->6545849526483966447 1395663853088424959 Filt/deduped BAM 1395663853088424959->-6852231497086719084 1395663853088424959->8658777209919939970 1222425149399113518 chip.bam2ta_ctl 2730508586739384865 TAG-ALIGN 1222425149399113518->2730508586739384865 2730508586739384865->6545849526483966447 9220878924288143578 Filt/deduped BAM 9220878924288143578->1222425149399113518 9220878924288143578->8658777209919939970 -2042406600431456359 chip.bam2ta_ctl -6471650721095900371 TAG-ALIGN -2042406600431456359->-6471650721095900371 -6471650721095900371->6545849526483966447 5824739033201875808 Filt/deduped BAM 5824739033201875808->-2042406600431456359 5824739033201875808->8658777209919939970 2753175893246137049 chip.bam2ta_ctl -2704204277531802950 TAG-ALIGN 2753175893246137049->-2704204277531802950 -2704204277531802950->6545849526483966447 6909192086369767166 Filt/deduped BAM 6909192086369767166->2753175893246137049 6909192086369767166->8658777209919939970 -3283599535716374613 chip.bam2ta_ctl 8128480719070579853 TAG-ALIGN -3283599535716374613->8128480719070579853 8128480719070579853->6545849526483966447 -4817620414026375520 Filt/deduped BAM -4817620414026375520->-3283599535716374613 -4817620414026375520->8658777209919939970 -3407110837222727917 chip.bam2ta_ctl -4098889776481819868 TAG-ALIGN -3407110837222727917->-4098889776481819868 -4098889776481819868->6545849526483966447 7330980779210965320 Filt/deduped BAM 7330980779210965320->-3407110837222727917 7330980779210965320->8658777209919939970 7173563667769098679 chip.bam2ta_ctl 9151335476537261707 TAG-ALIGN 7173563667769098679->9151335476537261707 9151335476537261707->6545849526483966447 -6386707894092661688 Filt/deduped BAM -6386707894092661688->7173563667769098679 -6386707894092661688->8658777209919939970 377849962759342160 chip.bam2ta_ctl 9003345792792764146 TAG-ALIGN 377849962759342160->9003345792792764146 9003345792792764146->6545849526483966447 6710266959948862035 Filt/deduped BAM 6710266959948862035->377849962759342160 6710266959948862035->8658777209919939970 1941543244349173207 IDR Plot ppr 5214682996487691166->1941543244349173207 -1621274952031288761 IDR Peak ppr 5214682996487691166->-1621274952031288761 -1621274952031288761->-1526148704852209670 -3134650580391361695 IDR Plot rep1_vs_rep2 -7907966937080164539->-3134650580391361695 -8712554963061417009 IDR NPeak rep1_vs_rep2 -7907966937080164539->-8712554963061417009 -8712554963061417009->-1526148704852209670 1760647540580829646 Overlap Peak rep1_vs_rep2 3061334508239858429->1760647540580829646 1760647540580829646->-2444321105193642407 -4010253516451643456 Overlap Peak optimal -2444321105193642407->-4010253516451643456 -7413918054075963765 Overlap reproducibility -2444321105193642407->-7413918054075963765 -7460701493839567498 IDR Peak optimal -1526148704852209670->-7460701493839567498 365910029315588496 IDR reproducibility -1526148704852209670->365910029315588496 959513106622488788 Overlap Peak ppr 953951866390802663->959513106622488788 959513106622488788->-2444321105193642407 -3708024844149327745 JSD Plot 8658777209919939970->-3708024844149327745

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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