File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF600HHA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF600HHA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF600HHA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF600HHA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF600HHA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF319JUQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF319JUQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF319JUQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF319JUQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF319JUQ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.639M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.639M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.639M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF600HHA.crop_101-2bp.nodup.pr1_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF600HHA.crop_101-2bp.nodup.pr1_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF600HHA.crop_101-2bp.nodup.pr1_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF600HHA.crop_101-2bp.nodup.pr1_x_ctl.pooled.246M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF600HHA.crop_101-2bp.nodup.pr2_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF600HHA.crop_101-2bp.nodup.pr2_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF600HHA.crop_101-2bp.nodup.pr2_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF600HHA.crop_101-2bp.nodup.pr2_x_ctl.pooled.246M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF319JUQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF319JUQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF319JUQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF319JUQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF319JUQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF319JUQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF319JUQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF319JUQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.639M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF600HHA.crop_101-2bp.nodup.pr1_x_ctl.pooled.246M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF600HHA.crop_101-2bp.nodup.pr2_x_ctl.pooled.246M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF600HHA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF600HHA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF600HHA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF600HHA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF600HHA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF600HHA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF319JUQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF319JUQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF319JUQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF319JUQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF319JUQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF319JUQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF319JUQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF319JUQ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF600HHA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e7d80504-bd8c-48b4-b292-a4abc6d7aa6c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.639M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.639M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF600HHA.crop_101-2bp.nodup_x_ctl.pooled.246M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a61a40b3-0d8b-4062-9e07-b7d58d74bca3/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF319JUQ.crop_101-2bp.nodup_x_ctl.pooled.393M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2984318315235975673 chip.macs2_signal_track_pooled -4446606946220920213 BW FC 2984318315235975673->-4446606946220920213 7290940100961410942 BW p-val 2984318315235975673->7290940100961410942 879878690216906440 chip.call_peak_pooled 2889911500051313304 Peak (bfilt) 879878690216906440->2889911500051313304 -2227627155844800424 Peak 879878690216906440->-2227627155844800424 -6431432919291989493 chip.idr_ppr -2227627155844800424->-6431432919291989493 -9011093903488662522 chip.idr -2227627155844800424->-9011093903488662522 -2007730508933186524 chip.overlap -2227627155844800424->-2007730508933186524 -1316734198297825288 chip.overlap_ppr -2227627155844800424->-1316734198297825288 -39313856807367026 chip.pool_ta 5492674368983375311 TAG-ALIGN -39313856807367026->5492674368983375311 5492674368983375311->2984318315235975673 5492674368983375311->879878690216906440 5492674368983375311->-6431432919291989493 5492674368983375311->-9011093903488662522 5492674368983375311->-2007730508933186524 5492674368983375311->-1316734198297825288 -716897841977279493 chip.call_peak 6741389157217366935 Peak (bfilt) -716897841977279493->6741389157217366935 1139695309456584913 Peak -716897841977279493->1139695309456584913 1139695309456584913->-9011093903488662522 1139695309456584913->-2007730508933186524 -5225914998744027891 chip.reproducibility_overlap 1139695309456584913->-5225914998744027891 -611896109611971765 chip.reproducibility_idr 1139695309456584913->-611896109611971765 -1671500047337133882 chip.bam2ta 3269332901972477181 TAG-ALIGN -1671500047337133882->3269332901972477181 3269332901972477181->-39313856807367026 3269332901972477181->-716897841977279493 -1650144363239619706 chip.macs2_signal_track 3269332901972477181->-1650144363239619706 3269332901972477181->-6431432919291989493 3269332901972477181->-5225914998744027891 3269332901972477181->-611896109611971765 3269332901972477181->-1316734198297825288 2182255896116283994 chip.filter -2923509131015525980 SAMstats QC 2182255896116283994->-2923509131015525980 -8464030815546882667 Filt/deduped BAM 2182255896116283994->-8464030815546882667 -4682022859134904517 LibCmplx QC 2182255896116283994->-4682022859134904517 -8464030815546882667->-1671500047337133882 4672167535025108038 chip.jsd -8464030815546882667->4672167535025108038 -2297862427320457635 chip.align -3234424312950584587 SAMstats QC -2297862427320457635->-3234424312950584587 7116584686115311993 BAM -2297862427320457635->7116584686115311993 7116584686115311993->2182255896116283994 -4623514021761070065 chip.xcor -7113650390367535639 XCOR Plot -4623514021761070065->-7113650390367535639 8942406983732689430 BW FC -1650144363239619706->8942406983732689430 2083389154584114841 BW p-val -1650144363239619706->2083389154584114841 5354657974625560347 FASTQ R1 (1) 5354657974625560347->-2297862427320457635 5354657974625560347->-4623514021761070065 2511953570706430634 FASTQ R2 (1) 2511953570706430634->-2297862427320457635 3779114811004626601 chip.call_peak -7737794207177830190 Peak (bfilt) 3779114811004626601->-7737794207177830190 -3345472181235056903 Peak 3779114811004626601->-3345472181235056903 -3345472181235056903->-9011093903488662522 -3345472181235056903->-2007730508933186524 -3345472181235056903->-5225914998744027891 -3345472181235056903->-611896109611971765 3594376222509100535 chip.bam2ta -4110840889603515294 TAG-ALIGN 3594376222509100535->-4110840889603515294 -4110840889603515294->-39313856807367026 -4110840889603515294->3779114811004626601 8523919487669534556 chip.macs2_signal_track -4110840889603515294->8523919487669534556 -4110840889603515294->-6431432919291989493 -4110840889603515294->-5225914998744027891 -4110840889603515294->-611896109611971765 -4110840889603515294->-1316734198297825288 3980350737896945649 chip.filter 7576916149970872222 SAMstats QC 3980350737896945649->7576916149970872222 4185978481296541578 Filt/deduped BAM 3980350737896945649->4185978481296541578 -3792638548101008393 LibCmplx QC 3980350737896945649->-3792638548101008393 4185978481296541578->3594376222509100535 4185978481296541578->4672167535025108038 -6357087176041494624 chip.align -5738983877125030228 SAMstats QC -6357087176041494624->-5738983877125030228 2237499424966963437 BAM -6357087176041494624->2237499424966963437 2237499424966963437->3980350737896945649 -3272164609256962429 chip.xcor 5197174163102545394 XCOR Plot -3272164609256962429->5197174163102545394 897486882879877551 BW FC 8523919487669534556->897486882879877551 -279104476116971098 BW p-val 8523919487669534556->-279104476116971098 1167363673501361764 FASTQ R1 (1) 1167363673501361764->-6357087176041494624 1167363673501361764->-3272164609256962429 5121900683532735517 FASTQ R2 (1) 5121900683532735517->-6357087176041494624 -6240059200632837436 chip.pool_ta_ctl -8117711491856612401 TAG-ALIGN -6240059200632837436->-8117711491856612401 -8117711491856612401->2984318315235975673 -8117711491856612401->879878690216906440 -8117711491856612401->-716897841977279493 -8117711491856612401->-1650144363239619706 -8117711491856612401->3779114811004626601 -8117711491856612401->8523919487669534556 -8117711491856612401->-6431432919291989493 -8117711491856612401->-5225914998744027891 -8117711491856612401->-611896109611971765 -8117711491856612401->-1316734198297825288 6606506355447708167 chip.bam2ta_ctl -2574151302095724251 TAG-ALIGN 6606506355447708167->-2574151302095724251 -2574151302095724251->-6240059200632837436 -1497092824554482164 Filt/deduped BAM -1497092824554482164->6606506355447708167 -1497092824554482164->4672167535025108038 2330658544579364743 chip.bam2ta_ctl -5222400606942545473 TAG-ALIGN 2330658544579364743->-5222400606942545473 -5222400606942545473->-6240059200632837436 -4280276692162152567 Filt/deduped BAM -4280276692162152567->2330658544579364743 -4280276692162152567->4672167535025108038 -7947893983725383449 chip.bam2ta_ctl -6007817990777897121 TAG-ALIGN -7947893983725383449->-6007817990777897121 -6007817990777897121->-6240059200632837436 -3099838233836049888 Filt/deduped BAM -3099838233836049888->-7947893983725383449 -3099838233836049888->4672167535025108038 7087970108950352568 chip.bam2ta_ctl -2757667305812709219 TAG-ALIGN 7087970108950352568->-2757667305812709219 -2757667305812709219->-6240059200632837436 7838361023033252074 Filt/deduped BAM 7838361023033252074->7087970108950352568 7838361023033252074->4672167535025108038 -1806083608513531768 chip.bam2ta_ctl -6509260582344487758 TAG-ALIGN -1806083608513531768->-6509260582344487758 -6509260582344487758->-6240059200632837436 5797948881324997618 Filt/deduped BAM 5797948881324997618->-1806083608513531768 5797948881324997618->4672167535025108038 -3267638980597683944 chip.bam2ta_ctl 5799233345878822669 TAG-ALIGN -3267638980597683944->5799233345878822669 5799233345878822669->-6240059200632837436 1712114818490451284 Filt/deduped BAM 1712114818490451284->-3267638980597683944 1712114818490451284->4672167535025108038 -381163527886838102 chip.bam2ta_ctl -9067180061512102804 TAG-ALIGN -381163527886838102->-9067180061512102804 -9067180061512102804->-6240059200632837436 8747120098173921960 Filt/deduped BAM 8747120098173921960->-381163527886838102 8747120098173921960->4672167535025108038 -686167160346142746 chip.bam2ta_ctl 4559931711196825460 TAG-ALIGN -686167160346142746->4559931711196825460 4559931711196825460->-6240059200632837436 -1627693904866864529 Filt/deduped BAM -1627693904866864529->-686167160346142746 -1627693904866864529->4672167535025108038 -1821225032626397796 chip.bam2ta_ctl -8905570888068746915 TAG-ALIGN -1821225032626397796->-8905570888068746915 -8905570888068746915->-6240059200632837436 -4669799620570914725 Filt/deduped BAM -4669799620570914725->-1821225032626397796 -4669799620570914725->4672167535025108038 -2484280900464886974 chip.bam2ta_ctl -9054845769729530340 TAG-ALIGN -2484280900464886974->-9054845769729530340 -9054845769729530340->-6240059200632837436 6166542225658316921 Filt/deduped BAM 6166542225658316921->-2484280900464886974 6166542225658316921->4672167535025108038 -6524325566814062343 chip.bam2ta_ctl -538053653854061743 TAG-ALIGN -6524325566814062343->-538053653854061743 -538053653854061743->-6240059200632837436 6574715572555656408 Filt/deduped BAM 6574715572555656408->-6524325566814062343 6574715572555656408->4672167535025108038 -2339262144920665962 chip.bam2ta_ctl -3995639079340312956 TAG-ALIGN -2339262144920665962->-3995639079340312956 -3995639079340312956->-6240059200632837436 -1723648891409668685 Filt/deduped BAM -1723648891409668685->-2339262144920665962 -1723648891409668685->4672167535025108038 7100640241285983105 chip.bam2ta_ctl 6996100797119668951 TAG-ALIGN 7100640241285983105->6996100797119668951 6996100797119668951->-6240059200632837436 7462493286909077588 Filt/deduped BAM 7462493286909077588->7100640241285983105 7462493286909077588->4672167535025108038 6585462017969244023 chip.bam2ta_ctl -8747712325726259118 TAG-ALIGN 6585462017969244023->-8747712325726259118 -8747712325726259118->-6240059200632837436 2227275794254871194 Filt/deduped BAM 2227275794254871194->6585462017969244023 2227275794254871194->4672167535025108038 -5119746299847981310 chip.bam2ta_ctl 817328162929647575 TAG-ALIGN -5119746299847981310->817328162929647575 817328162929647575->-6240059200632837436 -4204420730093118903 Filt/deduped BAM -4204420730093118903->-5119746299847981310 -4204420730093118903->4672167535025108038 3726820653675561768 chip.bam2ta_ctl 3508477498698957313 TAG-ALIGN 3726820653675561768->3508477498698957313 3508477498698957313->-6240059200632837436 -638527047513133854 Filt/deduped BAM -638527047513133854->3726820653675561768 -638527047513133854->4672167535025108038 -2924083481503953521 chip.bam2ta_ctl -7635151315208724001 TAG-ALIGN -2924083481503953521->-7635151315208724001 -7635151315208724001->-6240059200632837436 5488733781990131178 Filt/deduped BAM 5488733781990131178->-2924083481503953521 5488733781990131178->4672167535025108038 -2780710176444744810 chip.bam2ta_ctl 4958861746788281108 TAG-ALIGN -2780710176444744810->4958861746788281108 4958861746788281108->-6240059200632837436 -8763348609207486515 Filt/deduped BAM -8763348609207486515->-2780710176444744810 -8763348609207486515->4672167535025108038 -6091357158458296594 chip.bam2ta_ctl 8169859863410780185 TAG-ALIGN -6091357158458296594->8169859863410780185 8169859863410780185->-6240059200632837436 -1508761153036540481 Filt/deduped BAM -1508761153036540481->-6091357158458296594 -1508761153036540481->4672167535025108038 -50495021911550329 chip.bam2ta_ctl 908962418691408730 TAG-ALIGN -50495021911550329->908962418691408730 908962418691408730->-6240059200632837436 -6822701468113154268 Filt/deduped BAM -6822701468113154268->-50495021911550329 -6822701468113154268->4672167535025108038 -7628203131542584927 chip.bam2ta_ctl -4096360545472164017 TAG-ALIGN -7628203131542584927->-4096360545472164017 -4096360545472164017->-6240059200632837436 -7690023863716613740 Filt/deduped BAM -7690023863716613740->-7628203131542584927 -7690023863716613740->4672167535025108038 5590337419830638201 chip.bam2ta_ctl -394123916105432344 TAG-ALIGN 5590337419830638201->-394123916105432344 -394123916105432344->-6240059200632837436 -8876720296945934234 Filt/deduped BAM -8876720296945934234->5590337419830638201 -8876720296945934234->4672167535025108038 252446095704624415 chip.bam2ta_ctl 5616375362098438873 TAG-ALIGN 252446095704624415->5616375362098438873 5616375362098438873->-6240059200632837436 6279154259467488910 Filt/deduped BAM 6279154259467488910->252446095704624415 6279154259467488910->4672167535025108038 1485643494402581253 chip.bam2ta_ctl 5200493977641513731 TAG-ALIGN 1485643494402581253->5200493977641513731 5200493977641513731->-6240059200632837436 -4709470435540659931 Filt/deduped BAM -4709470435540659931->1485643494402581253 -4709470435540659931->4672167535025108038 -6912607136853039481 IDR Plot ppr -6431432919291989493->-6912607136853039481 -8986091726195390127 IDR Peak ppr -6431432919291989493->-8986091726195390127 -8986091726195390127->-611896109611971765 1906219874503894075 IDR Plot rep1_vs_rep2 -9011093903488662522->1906219874503894075 -7595518848278389014 IDR NPeak rep1_vs_rep2 -9011093903488662522->-7595518848278389014 -7595518848278389014->-611896109611971765 -2405113078839658207 Overlap Peak rep1_vs_rep2 -2007730508933186524->-2405113078839658207 -2405113078839658207->-5225914998744027891 -9156524368329032879 Overlap Peak optimal -5225914998744027891->-9156524368329032879 -8689603292092462531 Overlap reproducibility -5225914998744027891->-8689603292092462531 4280804889822517387 IDR Peak optimal -611896109611971765->4280804889822517387 -1016221242425949853 IDR reproducibility -611896109611971765->-1016221242425949853 6276220187761515148 Overlap Peak ppr -1316734198297825288->6276220187761515148 6276220187761515148->-5225914998744027891 -1440957336530301348 JSD Plot 4672167535025108038->-1440957336530301348

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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