File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF661FBG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF661FBG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF661FBG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF661FBG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF661FBG.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF380XRO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF380XRO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF380XRO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF380XRO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF380XRO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.393M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF661FBG.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF661FBG.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF661FBG.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF661FBG.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF661FBG.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF661FBG.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF661FBG.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF661FBG.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF380XRO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF380XRO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF380XRO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF380XRO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF380XRO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF380XRO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF380XRO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF380XRO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.393M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF661FBG.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF661FBG.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF661FBG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF661FBG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF661FBG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF661FBG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF661FBG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF661FBG.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF380XRO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF380XRO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF380XRO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF380XRO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF380XRO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF380XRO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF380XRO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF380XRO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF661FBG.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/9f85ed3a-eca1-4fa7-b935-6f962ab3ec63/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.393M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.393M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF661FBG.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/61894870-e67f-48ea-a7bc-1929e9ea6f2d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF380XRO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 1088050816088682 chip.macs2_signal_track_pooled -1606759176960470118 BW FC 1088050816088682->-1606759176960470118 6202281792816248966 BW p-val 1088050816088682->6202281792816248966 -8826189144946990669 chip.call_peak_pooled -2313122556771447736 Peak (bfilt) -8826189144946990669->-2313122556771447736 -3552365958692972971 Peak -8826189144946990669->-3552365958692972971 8238510475315038642 chip.idr_ppr -3552365958692972971->8238510475315038642 -5629982717056538674 chip.idr -3552365958692972971->-5629982717056538674 8887510178763874938 chip.overlap -3552365958692972971->8887510178763874938 -2661358038324790977 chip.overlap_ppr -3552365958692972971->-2661358038324790977 1146103511626736099 chip.pool_ta -3790922794098598415 TAG-ALIGN 1146103511626736099->-3790922794098598415 -3790922794098598415->1088050816088682 -3790922794098598415->-8826189144946990669 -3790922794098598415->8238510475315038642 -3790922794098598415->-5629982717056538674 -3790922794098598415->8887510178763874938 -3790922794098598415->-2661358038324790977 -2864035747883316247 chip.call_peak -5479768504022159632 Peak (bfilt) -2864035747883316247->-5479768504022159632 -1013248975492765988 Peak -2864035747883316247->-1013248975492765988 -1013248975492765988->-5629982717056538674 -1013248975492765988->8887510178763874938 -841985402311717200 chip.reproducibility_overlap -1013248975492765988->-841985402311717200 -4651194180776705669 chip.reproducibility_idr -1013248975492765988->-4651194180776705669 -1259593585542862811 chip.bam2ta 1943878050798457665 TAG-ALIGN -1259593585542862811->1943878050798457665 1943878050798457665->1146103511626736099 1943878050798457665->-2864035747883316247 -4143968318776962806 chip.macs2_signal_track 1943878050798457665->-4143968318776962806 1943878050798457665->8238510475315038642 1943878050798457665->-841985402311717200 1943878050798457665->-4651194180776705669 1943878050798457665->-2661358038324790977 143378078680376117 chip.filter 6322739491541206584 SAMstats QC 143378078680376117->6322739491541206584 -6206050751755252063 Filt/deduped BAM 143378078680376117->-6206050751755252063 4026127014597991285 LibCmplx QC 143378078680376117->4026127014597991285 -6206050751755252063->-1259593585542862811 3694310749890671401 chip.jsd -6206050751755252063->3694310749890671401 1061493912307023536 chip.align -7674399036106897585 SAMstats QC 1061493912307023536->-7674399036106897585 -2442597680664654558 BAM 1061493912307023536->-2442597680664654558 -2442597680664654558->143378078680376117 2069946660298345043 chip.xcor 7996037966630006978 XCOR Plot 2069946660298345043->7996037966630006978 -7138196582477666287 BW FC -4143968318776962806->-7138196582477666287 -353128387295442854 BW p-val -4143968318776962806->-353128387295442854 -3979410930636577497 FASTQ R1 (1) -3979410930636577497->1061493912307023536 -3979410930636577497->2069946660298345043 -1912278667950381273 FASTQ R2 (1) -1912278667950381273->1061493912307023536 -8918498139072785933 chip.call_peak -850852889334984483 Peak (bfilt) -8918498139072785933->-850852889334984483 3133885477621179792 Peak -8918498139072785933->3133885477621179792 3133885477621179792->-5629982717056538674 3133885477621179792->8887510178763874938 3133885477621179792->-841985402311717200 3133885477621179792->-4651194180776705669 -8913669510698100417 chip.bam2ta 1094616089684929266 TAG-ALIGN -8913669510698100417->1094616089684929266 1094616089684929266->1146103511626736099 1094616089684929266->-8918498139072785933 6428550711651358749 chip.macs2_signal_track 1094616089684929266->6428550711651358749 1094616089684929266->8238510475315038642 1094616089684929266->-841985402311717200 1094616089684929266->-4651194180776705669 1094616089684929266->-2661358038324790977 8831588199881236240 chip.filter 4532946968530492357 SAMstats QC 8831588199881236240->4532946968530492357 3846129310899771989 Filt/deduped BAM 8831588199881236240->3846129310899771989 1949202600113922981 LibCmplx QC 8831588199881236240->1949202600113922981 3846129310899771989->-8913669510698100417 3846129310899771989->3694310749890671401 7246534415837276584 chip.align -2633717939248563955 SAMstats QC 7246534415837276584->-2633717939248563955 8460207562641160627 BAM 7246534415837276584->8460207562641160627 8460207562641160627->8831588199881236240 -8808902611984457398 chip.xcor 3776168261298977288 XCOR Plot -8808902611984457398->3776168261298977288 -9156605591858047807 BW FC 6428550711651358749->-9156605591858047807 -2401457981999617504 BW p-val 6428550711651358749->-2401457981999617504 3015752381640382606 FASTQ R1 (1) 3015752381640382606->7246534415837276584 3015752381640382606->-8808902611984457398 -6618560665140802067 FASTQ R2 (1) -6618560665140802067->7246534415837276584 -6907353012553408837 chip.pool_ta_ctl -486003854668314649 TAG-ALIGN -6907353012553408837->-486003854668314649 -486003854668314649->1088050816088682 -486003854668314649->-8826189144946990669 -486003854668314649->-2864035747883316247 -486003854668314649->-4143968318776962806 -486003854668314649->-8918498139072785933 -486003854668314649->6428550711651358749 -486003854668314649->8238510475315038642 -486003854668314649->-841985402311717200 -486003854668314649->-4651194180776705669 -486003854668314649->-2661358038324790977 -2748940787189545461 chip.bam2ta_ctl -372851139623033945 TAG-ALIGN -2748940787189545461->-372851139623033945 -372851139623033945->-6907353012553408837 161175754611292090 Filt/deduped BAM 161175754611292090->-2748940787189545461 161175754611292090->3694310749890671401 -8770007167370187749 chip.bam2ta_ctl 6034407085815506007 TAG-ALIGN -8770007167370187749->6034407085815506007 6034407085815506007->-6907353012553408837 -8382187551413734987 Filt/deduped BAM -8382187551413734987->-8770007167370187749 -8382187551413734987->3694310749890671401 8080059777944302545 chip.bam2ta_ctl 2423509786587075317 TAG-ALIGN 8080059777944302545->2423509786587075317 2423509786587075317->-6907353012553408837 1726724336257741720 Filt/deduped BAM 1726724336257741720->8080059777944302545 1726724336257741720->3694310749890671401 2791365926733257782 chip.bam2ta_ctl 8231218030577158245 TAG-ALIGN 2791365926733257782->8231218030577158245 8231218030577158245->-6907353012553408837 787620607065517156 Filt/deduped BAM 787620607065517156->2791365926733257782 787620607065517156->3694310749890671401 -6150495466875819310 chip.bam2ta_ctl -8746346463038578753 TAG-ALIGN -6150495466875819310->-8746346463038578753 -8746346463038578753->-6907353012553408837 2145160572939944395 Filt/deduped BAM 2145160572939944395->-6150495466875819310 2145160572939944395->3694310749890671401 9189519680042800736 chip.bam2ta_ctl -6582872762972465006 TAG-ALIGN 9189519680042800736->-6582872762972465006 -6582872762972465006->-6907353012553408837 2681906482210430401 Filt/deduped BAM 2681906482210430401->9189519680042800736 2681906482210430401->3694310749890671401 -668455106695943861 chip.bam2ta_ctl -8723319818778810788 TAG-ALIGN -668455106695943861->-8723319818778810788 -8723319818778810788->-6907353012553408837 2273633086070032225 Filt/deduped BAM 2273633086070032225->-668455106695943861 2273633086070032225->3694310749890671401 -5653768245566381948 chip.bam2ta_ctl 2046402118468837178 TAG-ALIGN -5653768245566381948->2046402118468837178 2046402118468837178->-6907353012553408837 -6518170322578263961 Filt/deduped BAM -6518170322578263961->-5653768245566381948 -6518170322578263961->3694310749890671401 -4202501691322362953 chip.bam2ta_ctl 1845581329207737281 TAG-ALIGN -4202501691322362953->1845581329207737281 1845581329207737281->-6907353012553408837 6792060546458949120 Filt/deduped BAM 6792060546458949120->-4202501691322362953 6792060546458949120->3694310749890671401 -5952221688685089107 chip.bam2ta_ctl -8554695895230583873 TAG-ALIGN -5952221688685089107->-8554695895230583873 -8554695895230583873->-6907353012553408837 -9010384131993322501 Filt/deduped BAM -9010384131993322501->-5952221688685089107 -9010384131993322501->3694310749890671401 4337601568666316298 chip.bam2ta_ctl -3141836924544773373 TAG-ALIGN 4337601568666316298->-3141836924544773373 -3141836924544773373->-6907353012553408837 -8526849629364668679 Filt/deduped BAM -8526849629364668679->4337601568666316298 -8526849629364668679->3694310749890671401 -2783845873532312153 chip.bam2ta_ctl -5742781891955579236 TAG-ALIGN -2783845873532312153->-5742781891955579236 -5742781891955579236->-6907353012553408837 268251013630049874 Filt/deduped BAM 268251013630049874->-2783845873532312153 268251013630049874->3694310749890671401 -8128688433256027560 chip.bam2ta_ctl 204470544988816536 TAG-ALIGN -8128688433256027560->204470544988816536 204470544988816536->-6907353012553408837 3532959529269453768 Filt/deduped BAM 3532959529269453768->-8128688433256027560 3532959529269453768->3694310749890671401 -1513659153736067323 chip.bam2ta_ctl 8848302378331168248 TAG-ALIGN -1513659153736067323->8848302378331168248 8848302378331168248->-6907353012553408837 6204194426852469090 Filt/deduped BAM 6204194426852469090->-1513659153736067323 6204194426852469090->3694310749890671401 3217169071592899308 chip.bam2ta_ctl 8752429051031768606 TAG-ALIGN 3217169071592899308->8752429051031768606 8752429051031768606->-6907353012553408837 -9057911569883143124 Filt/deduped BAM -9057911569883143124->3217169071592899308 -9057911569883143124->3694310749890671401 1907817953071406755 chip.bam2ta_ctl -8252907528710218581 TAG-ALIGN 1907817953071406755->-8252907528710218581 -8252907528710218581->-6907353012553408837 -3143371441537263857 Filt/deduped BAM -3143371441537263857->1907817953071406755 -3143371441537263857->3694310749890671401 8432960609124898695 chip.bam2ta_ctl 2523089032680717208 TAG-ALIGN 8432960609124898695->2523089032680717208 2523089032680717208->-6907353012553408837 -707277706114058297 Filt/deduped BAM -707277706114058297->8432960609124898695 -707277706114058297->3694310749890671401 6031699396251802883 chip.bam2ta_ctl -1280183238897982523 TAG-ALIGN 6031699396251802883->-1280183238897982523 -1280183238897982523->-6907353012553408837 7431165091204695819 Filt/deduped BAM 7431165091204695819->6031699396251802883 7431165091204695819->3694310749890671401 -7459651901856534913 chip.bam2ta_ctl -3651068227388369931 TAG-ALIGN -7459651901856534913->-3651068227388369931 -3651068227388369931->-6907353012553408837 4050570854990377186 Filt/deduped BAM 4050570854990377186->-7459651901856534913 4050570854990377186->3694310749890671401 2061468641601466503 chip.bam2ta_ctl 2958172348345703472 TAG-ALIGN 2061468641601466503->2958172348345703472 2958172348345703472->-6907353012553408837 183177346126386990 Filt/deduped BAM 183177346126386990->2061468641601466503 183177346126386990->3694310749890671401 82043569810349846 chip.bam2ta_ctl 519003524136373326 TAG-ALIGN 82043569810349846->519003524136373326 519003524136373326->-6907353012553408837 2361637073951593040 Filt/deduped BAM 2361637073951593040->82043569810349846 2361637073951593040->3694310749890671401 -1208827818518538624 chip.bam2ta_ctl -3239851616426242882 TAG-ALIGN -1208827818518538624->-3239851616426242882 -3239851616426242882->-6907353012553408837 -4244038003021038395 Filt/deduped BAM -4244038003021038395->-1208827818518538624 -4244038003021038395->3694310749890671401 -3022186956987050062 chip.bam2ta_ctl 6701836802545287284 TAG-ALIGN -3022186956987050062->6701836802545287284 6701836802545287284->-6907353012553408837 -8441317839252049008 Filt/deduped BAM -8441317839252049008->-3022186956987050062 -8441317839252049008->3694310749890671401 -3735061259161798550 chip.bam2ta_ctl 6365369400460848770 TAG-ALIGN -3735061259161798550->6365369400460848770 6365369400460848770->-6907353012553408837 6321142852806106765 Filt/deduped BAM 6321142852806106765->-3735061259161798550 6321142852806106765->3694310749890671401 -6134326914931369466 IDR Plot ppr 8238510475315038642->-6134326914931369466 -4110736344038426452 IDR Peak ppr 8238510475315038642->-4110736344038426452 -4110736344038426452->-4651194180776705669 -5828932921030949419 IDR Plot rep1_vs_rep2 -5629982717056538674->-5828932921030949419 4052859648557087176 IDR NPeak rep1_vs_rep2 -5629982717056538674->4052859648557087176 4052859648557087176->-4651194180776705669 -675161835672346389 Overlap Peak rep1_vs_rep2 8887510178763874938->-675161835672346389 -675161835672346389->-841985402311717200 2803592093731225993 Overlap Peak optimal -841985402311717200->2803592093731225993 6786496620555326690 Overlap reproducibility -841985402311717200->6786496620555326690 7593277588908640519 IDR Peak optimal -4651194180776705669->7593277588908640519 8464576765658202766 IDR reproducibility -4651194180776705669->8464576765658202766 462551117584856792 Overlap Peak ppr -2661358038324790977->462551117584856792 462551117584856792->-841985402311717200 2374973309137745548 JSD Plot 3694310749890671401->2374973309137745548

UCSC browser tracks

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