File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF155JSY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF155JSY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF155JSY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF155JSY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF155JSY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF524NND.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF524NND.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF524NND.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF524NND.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF524NND.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF155JSY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF155JSY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF155JSY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF155JSY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF155JSY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF155JSY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF524NND.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF524NND.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF524NND.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF524NND.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF524NND.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF524NND.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF155JSY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.587M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2969362025644283488 chip.macs2_signal_track_pooled -8640682616412239449 BW FC -2969362025644283488->-8640682616412239449 185041562251068330 BW p-val -2969362025644283488->185041562251068330 -5626206303753168596 chip.call_peak_pooled 6202846026278518342 Peak (bfilt) -5626206303753168596->6202846026278518342 -63258837174966987 Peak -5626206303753168596->-63258837174966987 1498855637324892834 chip.idr_ppr -63258837174966987->1498855637324892834 -2134911268772237072 chip.idr -63258837174966987->-2134911268772237072 1867710577508301299 chip.overlap -63258837174966987->1867710577508301299 -4550819796651758548 chip.overlap_ppr -63258837174966987->-4550819796651758548 1710151198872539237 chip.pool_ta -2913082718495306881 TAG-ALIGN 1710151198872539237->-2913082718495306881 -2913082718495306881->-2969362025644283488 -2913082718495306881->-5626206303753168596 -2913082718495306881->1498855637324892834 -2913082718495306881->-2134911268772237072 -2913082718495306881->1867710577508301299 -2913082718495306881->-4550819796651758548 3629501255567273687 chip.call_peak -5859906710791621477 Peak (bfilt) 3629501255567273687->-5859906710791621477 -2086846629991834982 Peak 3629501255567273687->-2086846629991834982 -2086846629991834982->-2134911268772237072 -2086846629991834982->1867710577508301299 -5190680808022290496 chip.reproducibility_overlap -2086846629991834982->-5190680808022290496 1597426547805417577 chip.reproducibility_idr -2086846629991834982->1597426547805417577 5629120540445565618 chip.bam2ta 1173452370027046846 TAG-ALIGN 5629120540445565618->1173452370027046846 1173452370027046846->1710151198872539237 1173452370027046846->3629501255567273687 -8950307395270806495 chip.macs2_signal_track 1173452370027046846->-8950307395270806495 1173452370027046846->1498855637324892834 1173452370027046846->-5190680808022290496 1173452370027046846->1597426547805417577 1173452370027046846->-4550819796651758548 -5071119745086481766 chip.filter -3766182997598142617 SAMstats QC -5071119745086481766->-3766182997598142617 7746444611708481625 Filt/deduped BAM -5071119745086481766->7746444611708481625 3978600871043164096 LibCmplx QC -5071119745086481766->3978600871043164096 7746444611708481625->5629120540445565618 -6991659757663751938 chip.jsd 7746444611708481625->-6991659757663751938 952994256310672580 chip.align -4747443011781820715 SAMstats QC 952994256310672580->-4747443011781820715 7796394732736184524 BAM 952994256310672580->7796394732736184524 7796394732736184524->-5071119745086481766 -3876515099070131978 chip.xcor 8460778001359098318 XCOR Plot -3876515099070131978->8460778001359098318 7961853910565357005 BW FC -8950307395270806495->7961853910565357005 -8960762799452103391 BW p-val -8950307395270806495->-8960762799452103391 2842610602287442313 FASTQ R1 (1) 2842610602287442313->952994256310672580 2842610602287442313->-3876515099070131978 -8242960966854297069 FASTQ R2 (1) -8242960966854297069->952994256310672580 -3502197299015914739 chip.call_peak -5247343707471036485 Peak (bfilt) -3502197299015914739->-5247343707471036485 2790100158827858287 Peak -3502197299015914739->2790100158827858287 2790100158827858287->-2134911268772237072 2790100158827858287->1867710577508301299 2790100158827858287->-5190680808022290496 2790100158827858287->1597426547805417577 2385709170586005451 chip.bam2ta -8783718103893779641 TAG-ALIGN 2385709170586005451->-8783718103893779641 -8783718103893779641->1710151198872539237 -8783718103893779641->-3502197299015914739 7047066870838741823 chip.macs2_signal_track -8783718103893779641->7047066870838741823 -8783718103893779641->1498855637324892834 -8783718103893779641->-5190680808022290496 -8783718103893779641->1597426547805417577 -8783718103893779641->-4550819796651758548 -6195030634151964081 chip.filter 3181038647346337104 SAMstats QC -6195030634151964081->3181038647346337104 3167513681346148860 Filt/deduped BAM -6195030634151964081->3167513681346148860 -5254003064967281935 LibCmplx QC -6195030634151964081->-5254003064967281935 3167513681346148860->2385709170586005451 3167513681346148860->-6991659757663751938 3928306832204409598 chip.align 6653173285405072122 SAMstats QC 3928306832204409598->6653173285405072122 930939910572533525 BAM 3928306832204409598->930939910572533525 930939910572533525->-6195030634151964081 1485039440820406531 chip.xcor -3801371671103470008 XCOR Plot 1485039440820406531->-3801371671103470008 7006032528900963556 BW FC 7047066870838741823->7006032528900963556 -5720464437951242446 BW p-val 7047066870838741823->-5720464437951242446 -6130375945928591202 FASTQ R1 (1) -6130375945928591202->3928306832204409598 -6130375945928591202->1485039440820406531 -814451192108876097 FASTQ R2 (1) -814451192108876097->3928306832204409598 1681969679876879356 chip.pool_ta_ctl -2558367585658627349 TAG-ALIGN 1681969679876879356->-2558367585658627349 -2558367585658627349->-2969362025644283488 -2558367585658627349->-5626206303753168596 -2558367585658627349->3629501255567273687 -2558367585658627349->-8950307395270806495 -2558367585658627349->-3502197299015914739 -2558367585658627349->7047066870838741823 -2558367585658627349->1498855637324892834 -2558367585658627349->-5190680808022290496 -2558367585658627349->1597426547805417577 -2558367585658627349->-4550819796651758548 218472331540779775 chip.bam2ta_ctl -275104923244693833 TAG-ALIGN 218472331540779775->-275104923244693833 -275104923244693833->1681969679876879356 431134505606962103 Filt/deduped BAM 431134505606962103->218472331540779775 431134505606962103->-6991659757663751938 -2599208620189640799 chip.bam2ta_ctl 6154771970015723293 TAG-ALIGN -2599208620189640799->6154771970015723293 6154771970015723293->1681969679876879356 -5699738965277702840 Filt/deduped BAM -5699738965277702840->-2599208620189640799 -5699738965277702840->-6991659757663751938 2016742884446010666 chip.bam2ta_ctl -1741274959561531288 TAG-ALIGN 2016742884446010666->-1741274959561531288 -1741274959561531288->1681969679876879356 -6087528098525538663 Filt/deduped BAM -6087528098525538663->2016742884446010666 -6087528098525538663->-6991659757663751938 -1910092183077819502 chip.bam2ta_ctl 7286567529023381283 TAG-ALIGN -1910092183077819502->7286567529023381283 7286567529023381283->1681969679876879356 6699968276725809787 Filt/deduped BAM 6699968276725809787->-1910092183077819502 6699968276725809787->-6991659757663751938 21275897506133551 chip.bam2ta_ctl 688234422870812278 TAG-ALIGN 21275897506133551->688234422870812278 688234422870812278->1681969679876879356 -9068953925609467600 Filt/deduped BAM -9068953925609467600->21275897506133551 -9068953925609467600->-6991659757663751938 2165021212427872463 chip.bam2ta_ctl 5851987215672650629 TAG-ALIGN 2165021212427872463->5851987215672650629 5851987215672650629->1681969679876879356 2959464065010367022 Filt/deduped BAM 2959464065010367022->2165021212427872463 2959464065010367022->-6991659757663751938 3777991126701927957 chip.bam2ta_ctl 7437668342128616750 TAG-ALIGN 3777991126701927957->7437668342128616750 7437668342128616750->1681969679876879356 -1791563413805304248 Filt/deduped BAM -1791563413805304248->3777991126701927957 -1791563413805304248->-6991659757663751938 -2348465032138192928 chip.bam2ta_ctl -6975998703690953602 TAG-ALIGN -2348465032138192928->-6975998703690953602 -6975998703690953602->1681969679876879356 7640283799854919894 Filt/deduped BAM 7640283799854919894->-2348465032138192928 7640283799854919894->-6991659757663751938 -8261226111338925057 chip.bam2ta_ctl 7234523998887766455 TAG-ALIGN -8261226111338925057->7234523998887766455 7234523998887766455->1681969679876879356 8839953625432689423 Filt/deduped BAM 8839953625432689423->-8261226111338925057 8839953625432689423->-6991659757663751938 6299031424548637924 chip.bam2ta_ctl -4675794849627440806 TAG-ALIGN 6299031424548637924->-4675794849627440806 -4675794849627440806->1681969679876879356 -2448789001466504580 Filt/deduped BAM -2448789001466504580->6299031424548637924 -2448789001466504580->-6991659757663751938 2631413035897266377 chip.bam2ta_ctl 1535970436981876165 TAG-ALIGN 2631413035897266377->1535970436981876165 1535970436981876165->1681969679876879356 7159371425858358901 Filt/deduped BAM 7159371425858358901->2631413035897266377 7159371425858358901->-6991659757663751938 454724816588145514 chip.bam2ta_ctl 4797088359473784038 TAG-ALIGN 454724816588145514->4797088359473784038 4797088359473784038->1681969679876879356 -7755662980252080176 Filt/deduped BAM -7755662980252080176->454724816588145514 -7755662980252080176->-6991659757663751938 3019882601589094156 chip.bam2ta_ctl 8436857976810018035 TAG-ALIGN 3019882601589094156->8436857976810018035 8436857976810018035->1681969679876879356 301579983936841904 Filt/deduped BAM 301579983936841904->3019882601589094156 301579983936841904->-6991659757663751938 -7509425451841160712 chip.bam2ta_ctl -5204573974822544043 TAG-ALIGN -7509425451841160712->-5204573974822544043 -5204573974822544043->1681969679876879356 -4515141083891102983 Filt/deduped BAM -4515141083891102983->-7509425451841160712 -4515141083891102983->-6991659757663751938 6696447077756981052 chip.bam2ta_ctl 6878837256356290372 TAG-ALIGN 6696447077756981052->6878837256356290372 6878837256356290372->1681969679876879356 -1790662603536000373 Filt/deduped BAM -1790662603536000373->6696447077756981052 -1790662603536000373->-6991659757663751938 -8125563700668633433 chip.bam2ta_ctl 2224097315390947214 TAG-ALIGN -8125563700668633433->2224097315390947214 2224097315390947214->1681969679876879356 -4109318567513318095 Filt/deduped BAM -4109318567513318095->-8125563700668633433 -4109318567513318095->-6991659757663751938 -4470136106634089396 chip.bam2ta_ctl -7536847646453897911 TAG-ALIGN -4470136106634089396->-7536847646453897911 -7536847646453897911->1681969679876879356 -1886065581675973082 Filt/deduped BAM -1886065581675973082->-4470136106634089396 -1886065581675973082->-6991659757663751938 8445822367165301312 chip.bam2ta_ctl -3555401729948216122 TAG-ALIGN 8445822367165301312->-3555401729948216122 -3555401729948216122->1681969679876879356 -5052150182556283604 Filt/deduped BAM -5052150182556283604->8445822367165301312 -5052150182556283604->-6991659757663751938 -1527657376878274659 chip.bam2ta_ctl -5567727683766946737 TAG-ALIGN -1527657376878274659->-5567727683766946737 -5567727683766946737->1681969679876879356 7345278373458824991 Filt/deduped BAM 7345278373458824991->-1527657376878274659 7345278373458824991->-6991659757663751938 6288882264057441854 chip.bam2ta_ctl -4166867328210655225 TAG-ALIGN 6288882264057441854->-4166867328210655225 -4166867328210655225->1681969679876879356 -6841024105337090357 Filt/deduped BAM -6841024105337090357->6288882264057441854 -6841024105337090357->-6991659757663751938 -4259082601954508092 chip.bam2ta_ctl -3767009979952055609 TAG-ALIGN -4259082601954508092->-3767009979952055609 -3767009979952055609->1681969679876879356 1234369615721918340 Filt/deduped BAM 1234369615721918340->-4259082601954508092 1234369615721918340->-6991659757663751938 -5764070010556077365 chip.bam2ta_ctl -178697477471051435 TAG-ALIGN -5764070010556077365->-178697477471051435 -178697477471051435->1681969679876879356 4463809861267082594 Filt/deduped BAM 4463809861267082594->-5764070010556077365 4463809861267082594->-6991659757663751938 -5814864737608895434 chip.bam2ta_ctl 8430358415169717141 TAG-ALIGN -5814864737608895434->8430358415169717141 8430358415169717141->1681969679876879356 -3357387073316266198 Filt/deduped BAM -3357387073316266198->-5814864737608895434 -3357387073316266198->-6991659757663751938 8292817036738623437 chip.bam2ta_ctl 6275020988272540564 TAG-ALIGN 8292817036738623437->6275020988272540564 6275020988272540564->1681969679876879356 -1839117511773646475 Filt/deduped BAM -1839117511773646475->8292817036738623437 -1839117511773646475->-6991659757663751938 3479244066907085074 IDR Plot ppr 1498855637324892834->3479244066907085074 1285833811651663167 IDR Peak ppr 1498855637324892834->1285833811651663167 1285833811651663167->1597426547805417577 -7443945355491736253 IDR Plot rep1_vs_rep2 -2134911268772237072->-7443945355491736253 8164058751646153721 IDR NPeak rep1_vs_rep2 -2134911268772237072->8164058751646153721 8164058751646153721->1597426547805417577 -1333353154297514682 Overlap Peak rep1_vs_rep2 1867710577508301299->-1333353154297514682 -1333353154297514682->-5190680808022290496 -3102336705606270232 Overlap Peak optimal -5190680808022290496->-3102336705606270232 -8351329971965581808 Overlap reproducibility -5190680808022290496->-8351329971965581808 -8297570777603366967 IDR Peak optimal 1597426547805417577->-8297570777603366967 7451530515575103003 IDR reproducibility 1597426547805417577->7451530515575103003 2266480284178621404 Overlap Peak ppr -4550819796651758548->2266480284178621404 2266480284178621404->-5190680808022290496 5058268392343326838 JSD Plot -6991659757663751938->5058268392343326838

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval.signal.bigwig?Expires=1601341406&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=pHqc6o4kfaksqF4IcLqJMX%2Fnkjp7sXoZgismmrf51R%2B3G8%2BVMHOEceb5vDJ5D7Odqta7NJCmmoRA5Uh9VQav3Fm9sIfPoJrEcpw4idwpf5Ycepzr7EjBzTbxlu79eyEJvsanCvBPcREVyWd2SJs8qh6A0rPbKOMrPXRTdkZ6eXp0hNG2wDDCbUPBCEBHOO5aooOnVgXv9pjl2h2o5ZK3pWLMLBVAi4CzIK43Tx6fiaOj51%2FS%2BczwypuuSACYRpgFy6013ZH3GXLkXKPBIgZdwzN55vqQ16uHJ%2Bp7%2BOmKXYtlly1JFicuHgBgzl3aid8szfIGyfmbnML40QkBU2wh%2Bw%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.fc.signal.bigwig?Expires=1601341406&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=HIqXYuEz%2B3JTRi%2BiE3fi2eVSnyUTspUaU2%2F%2B4gpJ53iJsqqhe6IovQfph1mY6buL62WS4gabB5upz2H90aD1BlLkV89IEEUrSZ%2BhH1PH%2B%2FXLZDQSlmMk4IJMgIn9l62M1gwva7Sk96QaDGUGqLzCuZWt6o0AbBMuTyuoDBLvCZzM01EbzfMobmqWAmUyMvyahlPzGe%2BxEYmmrvAHVIVqhaI0Q6SkvINeUyXbyWOMB3ZxXXoUCkVXT2BybM0jzZtMPTKs8q5%2Fy614d7G4wQm68H7xD6htNKuJnrfqFvDoCE6MKLELRq6mBVUDbIpHp%2Fv04kIO5opgbfPFJ3WBuNe%2FFg%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig?Expires=1601341407&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=ukT%2FRiSPsCj6%2Fgqk31pe%2BgZmZKULIKiA45r0%2BvVE0D%2FMi0BPIgfGPAAyiC0AH1AzQKnKS4fqZsY4foc%2Fzf40YPqD8uJ5JucOlcd%2Fa58s%2FivlPcamakD28lAU36Ifyp%2BJype1sCG%2FGwC069pKDtVHW5I03PSBYGvXY23sERUrn2FYqvDP4RZw4oeDCt9xjSdXckEYLdV08Zuc2fbnEQ05HWxO2cPCzRrSD%2FmTscG775hrxz2gBvLoMZQxkDBh%2FYax3SNfSXR%2F2ENqFs9SjGNkasSygKx6qOKuHwkHVBNk%2Fyo89MyTt1%2B2BUbRzE6Ja7Nvx8dKQeCT9oFTu2p43oPocQ%3D%3D"
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