File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF155JSY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF155JSY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF155JSY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF155JSY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF155JSY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF524NND.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF524NND.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF524NND.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF524NND.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF524NND.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF155JSY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF155JSY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF155JSY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF155JSY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF155JSY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF155JSY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF524NND.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF524NND.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF524NND.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF524NND.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF524NND.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF524NND.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF155JSY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/6e7a72d2-4292-4fb0-9474-e47dd519c47d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.587M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF155JSY.crop_101-2bp.nodup_x_ctl.pooled.299M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e00946bb-8235-4ec9-bd2e-d999081dba3c/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF524NND.crop_101-2bp.nodup_x_ctl.pooled.287M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 7177503612645809622 chip.macs2_signal_track_pooled 6000147534117490000 BW FC 7177503612645809622->6000147534117490000 2922009396903192700 BW p-val 7177503612645809622->2922009396903192700 -3298244849061400785 chip.call_peak_pooled -1387158522335261469 Peak (bfilt) -3298244849061400785->-1387158522335261469 4814680555461009355 Peak -3298244849061400785->4814680555461009355 6141052093349391027 chip.idr_ppr 4814680555461009355->6141052093349391027 6049224035160545349 chip.idr 4814680555461009355->6049224035160545349 1544895566240559653 chip.overlap 4814680555461009355->1544895566240559653 -6942556390772013831 chip.overlap_ppr 4814680555461009355->-6942556390772013831 -1243329320148729543 chip.pool_ta -1820864230549121121 TAG-ALIGN -1243329320148729543->-1820864230549121121 -1820864230549121121->7177503612645809622 -1820864230549121121->-3298244849061400785 -1820864230549121121->6141052093349391027 -1820864230549121121->6049224035160545349 -1820864230549121121->1544895566240559653 -1820864230549121121->-6942556390772013831 3974434851733639384 chip.call_peak -495793729728170779 Peak (bfilt) 3974434851733639384->-495793729728170779 -1306057516900155736 Peak 3974434851733639384->-1306057516900155736 -1306057516900155736->6049224035160545349 -1306057516900155736->1544895566240559653 1391774021715579422 chip.reproducibility_overlap -1306057516900155736->1391774021715579422 4773422812819192529 chip.reproducibility_idr -1306057516900155736->4773422812819192529 -6514668526314832752 chip.bam2ta 4720805062532513662 TAG-ALIGN -6514668526314832752->4720805062532513662 4720805062532513662->-1243329320148729543 4720805062532513662->3974434851733639384 5551761674400886903 chip.macs2_signal_track 4720805062532513662->5551761674400886903 4720805062532513662->6141052093349391027 4720805062532513662->1391774021715579422 4720805062532513662->4773422812819192529 4720805062532513662->-6942556390772013831 7987487393306070454 chip.filter -1254235260320204432 SAMstats QC 7987487393306070454->-1254235260320204432 -3889351363597855014 Filt/deduped BAM 7987487393306070454->-3889351363597855014 -348182605024045044 LibCmplx QC 7987487393306070454->-348182605024045044 -3889351363597855014->-6514668526314832752 7201699390314090130 chip.jsd -3889351363597855014->7201699390314090130 -4470587602691693699 chip.align -1382010197325312806 SAMstats QC -4470587602691693699->-1382010197325312806 7653031010077713506 BAM -4470587602691693699->7653031010077713506 7653031010077713506->7987487393306070454 -5734018840674017513 chip.xcor -5220232214706413126 XCOR Plot -5734018840674017513->-5220232214706413126 -6620055707634232645 BW FC 5551761674400886903->-6620055707634232645 -4423290973451704439 BW p-val 5551761674400886903->-4423290973451704439 7546456317520065070 FASTQ R1 (1) 7546456317520065070->-4470587602691693699 7546456317520065070->-5734018840674017513 4686452282213761105 FASTQ R2 (1) 4686452282213761105->-4470587602691693699 -3177400657046739198 chip.call_peak -5199632272476642021 Peak (bfilt) -3177400657046739198->-5199632272476642021 1120801572691726250 Peak -3177400657046739198->1120801572691726250 1120801572691726250->6049224035160545349 1120801572691726250->1544895566240559653 1120801572691726250->1391774021715579422 1120801572691726250->4773422812819192529 -393455007934839330 chip.bam2ta -3222363362351840623 TAG-ALIGN -393455007934839330->-3222363362351840623 -3222363362351840623->-1243329320148729543 -3222363362351840623->-3177400657046739198 -6205769728751924565 chip.macs2_signal_track -3222363362351840623->-6205769728751924565 -3222363362351840623->6141052093349391027 -3222363362351840623->1391774021715579422 -3222363362351840623->4773422812819192529 -3222363362351840623->-6942556390772013831 8022733338120380449 chip.filter 2858713437126911371 SAMstats QC 8022733338120380449->2858713437126911371 -7394693004736465254 Filt/deduped BAM 8022733338120380449->-7394693004736465254 -7366564998296131611 LibCmplx QC 8022733338120380449->-7366564998296131611 -7394693004736465254->-393455007934839330 -7394693004736465254->7201699390314090130 -8457496928655851301 chip.align -5028779017059667843 SAMstats QC -8457496928655851301->-5028779017059667843 1702430313594817154 BAM -8457496928655851301->1702430313594817154 1702430313594817154->8022733338120380449 2548559503470762842 chip.xcor 8459552428103293555 XCOR Plot 2548559503470762842->8459552428103293555 8471394030383947421 BW FC -6205769728751924565->8471394030383947421 7525292520960728709 BW p-val -6205769728751924565->7525292520960728709 -4450889646474135140 FASTQ R1 (1) -4450889646474135140->-8457496928655851301 -4450889646474135140->2548559503470762842 4072458878814807418 FASTQ R2 (1) 4072458878814807418->-8457496928655851301 4662349140447560482 chip.pool_ta_ctl -6868925320921929097 TAG-ALIGN 4662349140447560482->-6868925320921929097 -6868925320921929097->7177503612645809622 -6868925320921929097->-3298244849061400785 -6868925320921929097->3974434851733639384 -6868925320921929097->5551761674400886903 -6868925320921929097->-3177400657046739198 -6868925320921929097->-6205769728751924565 -6868925320921929097->6141052093349391027 -6868925320921929097->1391774021715579422 -6868925320921929097->4773422812819192529 -6868925320921929097->-6942556390772013831 -7801035942421205205 chip.bam2ta_ctl -393922833087016532 TAG-ALIGN -7801035942421205205->-393922833087016532 -393922833087016532->4662349140447560482 -7286890070707092692 Filt/deduped BAM -7286890070707092692->-7801035942421205205 -7286890070707092692->7201699390314090130 3255911347812515785 chip.bam2ta_ctl 1455973413033990481 TAG-ALIGN 3255911347812515785->1455973413033990481 1455973413033990481->4662349140447560482 -581455408718022682 Filt/deduped BAM -581455408718022682->3255911347812515785 -581455408718022682->7201699390314090130 -8900681831690898917 chip.bam2ta_ctl 8662888513058100477 TAG-ALIGN -8900681831690898917->8662888513058100477 8662888513058100477->4662349140447560482 1074702625383130445 Filt/deduped BAM 1074702625383130445->-8900681831690898917 1074702625383130445->7201699390314090130 4016325378253520072 chip.bam2ta_ctl -155864194911649066 TAG-ALIGN 4016325378253520072->-155864194911649066 -155864194911649066->4662349140447560482 7495407217958431888 Filt/deduped BAM 7495407217958431888->4016325378253520072 7495407217958431888->7201699390314090130 -2523040375559088202 chip.bam2ta_ctl -2248872039473814845 TAG-ALIGN -2523040375559088202->-2248872039473814845 -2248872039473814845->4662349140447560482 7579458656277809120 Filt/deduped BAM 7579458656277809120->-2523040375559088202 7579458656277809120->7201699390314090130 5187218471364669079 chip.bam2ta_ctl -2515181314269817762 TAG-ALIGN 5187218471364669079->-2515181314269817762 -2515181314269817762->4662349140447560482 798631707350261625 Filt/deduped BAM 798631707350261625->5187218471364669079 798631707350261625->7201699390314090130 1918421194587949285 chip.bam2ta_ctl -7905701594821940910 TAG-ALIGN 1918421194587949285->-7905701594821940910 -7905701594821940910->4662349140447560482 -3968379261985727850 Filt/deduped BAM -3968379261985727850->1918421194587949285 -3968379261985727850->7201699390314090130 1998019353476905321 chip.bam2ta_ctl -3872750386463537587 TAG-ALIGN 1998019353476905321->-3872750386463537587 -3872750386463537587->4662349140447560482 1690500896674468812 Filt/deduped BAM 1690500896674468812->1998019353476905321 1690500896674468812->7201699390314090130 4862020607796788064 chip.bam2ta_ctl 3074023229226088755 TAG-ALIGN 4862020607796788064->3074023229226088755 3074023229226088755->4662349140447560482 2219705412625824378 Filt/deduped BAM 2219705412625824378->4862020607796788064 2219705412625824378->7201699390314090130 -4936311495498290106 chip.bam2ta_ctl 194603768653483571 TAG-ALIGN -4936311495498290106->194603768653483571 194603768653483571->4662349140447560482 -5501929660159745853 Filt/deduped BAM -5501929660159745853->-4936311495498290106 -5501929660159745853->7201699390314090130 -7665992462818085037 chip.bam2ta_ctl 857273012738743753 TAG-ALIGN -7665992462818085037->857273012738743753 857273012738743753->4662349140447560482 -751644290376703319 Filt/deduped BAM -751644290376703319->-7665992462818085037 -751644290376703319->7201699390314090130 -1257382370919921716 chip.bam2ta_ctl -1901217462533813690 TAG-ALIGN -1257382370919921716->-1901217462533813690 -1901217462533813690->4662349140447560482 -2250137866904156628 Filt/deduped BAM -2250137866904156628->-1257382370919921716 -2250137866904156628->7201699390314090130 4755416450842855600 chip.bam2ta_ctl -6435553680114687790 TAG-ALIGN 4755416450842855600->-6435553680114687790 -6435553680114687790->4662349140447560482 -344886720682358171 Filt/deduped BAM -344886720682358171->4755416450842855600 -344886720682358171->7201699390314090130 -1996877191126821179 chip.bam2ta_ctl -8426583650356079965 TAG-ALIGN -1996877191126821179->-8426583650356079965 -8426583650356079965->4662349140447560482 3618354268804124420 Filt/deduped BAM 3618354268804124420->-1996877191126821179 3618354268804124420->7201699390314090130 7766408458865832618 chip.bam2ta_ctl 7681972082613703149 TAG-ALIGN 7766408458865832618->7681972082613703149 7681972082613703149->4662349140447560482 3784674896887550152 Filt/deduped BAM 3784674896887550152->7766408458865832618 3784674896887550152->7201699390314090130 7449758924309886421 chip.bam2ta_ctl -589100455850469536 TAG-ALIGN 7449758924309886421->-589100455850469536 -589100455850469536->4662349140447560482 -8740867843118021625 Filt/deduped BAM -8740867843118021625->7449758924309886421 -8740867843118021625->7201699390314090130 2284483687071193837 chip.bam2ta_ctl -5232580755938472418 TAG-ALIGN 2284483687071193837->-5232580755938472418 -5232580755938472418->4662349140447560482 6866916038442302228 Filt/deduped BAM 6866916038442302228->2284483687071193837 6866916038442302228->7201699390314090130 -7769079773414635786 chip.bam2ta_ctl 8047323009452229837 TAG-ALIGN -7769079773414635786->8047323009452229837 8047323009452229837->4662349140447560482 -4021172736064834143 Filt/deduped BAM -4021172736064834143->-7769079773414635786 -4021172736064834143->7201699390314090130 -8222866304250018431 chip.bam2ta_ctl 7217648489810084337 TAG-ALIGN -8222866304250018431->7217648489810084337 7217648489810084337->4662349140447560482 -9056030889739807749 Filt/deduped BAM -9056030889739807749->-8222866304250018431 -9056030889739807749->7201699390314090130 1219380124742893387 chip.bam2ta_ctl -4776152182023494432 TAG-ALIGN 1219380124742893387->-4776152182023494432 -4776152182023494432->4662349140447560482 6179750470590096581 Filt/deduped BAM 6179750470590096581->1219380124742893387 6179750470590096581->7201699390314090130 -1988352515126491286 chip.bam2ta_ctl 7933234629399027752 TAG-ALIGN -1988352515126491286->7933234629399027752 7933234629399027752->4662349140447560482 1908987717879613389 Filt/deduped BAM 1908987717879613389->-1988352515126491286 1908987717879613389->7201699390314090130 946991825517544212 chip.bam2ta_ctl 8248473208564303216 TAG-ALIGN 946991825517544212->8248473208564303216 8248473208564303216->4662349140447560482 9104128958399703356 Filt/deduped BAM 9104128958399703356->946991825517544212 9104128958399703356->7201699390314090130 729871596390848288 chip.bam2ta_ctl 8547835244714511978 TAG-ALIGN 729871596390848288->8547835244714511978 8547835244714511978->4662349140447560482 589967977718347171 Filt/deduped BAM 589967977718347171->729871596390848288 589967977718347171->7201699390314090130 4197925090631700623 chip.bam2ta_ctl -258312320730031999 TAG-ALIGN 4197925090631700623->-258312320730031999 -258312320730031999->4662349140447560482 -5161896609876258270 Filt/deduped BAM -5161896609876258270->4197925090631700623 -5161896609876258270->7201699390314090130 -2275746050839937537 IDR Plot ppr 6141052093349391027->-2275746050839937537 5334015549373738703 IDR Peak ppr 6141052093349391027->5334015549373738703 5334015549373738703->4773422812819192529 7426817630737503165 IDR Plot rep1_vs_rep2 6049224035160545349->7426817630737503165 2341376372918475453 IDR NPeak rep1_vs_rep2 6049224035160545349->2341376372918475453 2341376372918475453->4773422812819192529 -1682250975976156255 Overlap Peak rep1_vs_rep2 1544895566240559653->-1682250975976156255 -1682250975976156255->1391774021715579422 6169932074306022835 Overlap Peak optimal 1391774021715579422->6169932074306022835 3228721266044784033 Overlap reproducibility 1391774021715579422->3228721266044784033 -310289941605410725 IDR Peak optimal 4773422812819192529->-310289941605410725 5772778722636819356 IDR reproducibility 4773422812819192529->5772778722636819356 -8483136585911389799 Overlap Peak ppr -6942556390772013831->-8483136585911389799 -8483136585911389799->1391774021715579422 -4828249733796766099 JSD Plot 7201699390314090130->-4828249733796766099

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