File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF784RTY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF784RTY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF784RTY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF784RTY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF784RTY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF610KRG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF610KRG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF610KRG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF610KRG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF610KRG.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF784RTY.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF784RTY.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF784RTY.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF784RTY.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF784RTY.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF784RTY.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF784RTY.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF784RTY.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF610KRG.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF610KRG.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF610KRG.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF610KRG.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF610KRG.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF610KRG.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF610KRG.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF610KRG.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF784RTY.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF784RTY.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF784RTY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF784RTY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF784RTY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF784RTY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF784RTY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF784RTY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF610KRG.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF610KRG.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF610KRG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF610KRG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF610KRG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF610KRG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF610KRG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF610KRG.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/92e0a0d2-ac15-4a64-b242-5d97069fca66/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF784RTY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/4699ed04-3b12-43a8-8a5e-5c2190201355/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.544M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.544M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF610KRG.crop_101-2bp.nodup_x_ctl.pooled.267M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2105043135967991097 chip.macs2_signal_track_pooled -3422794964382824266 BW FC -2105043135967991097->-3422794964382824266 7304631244828757140 BW p-val -2105043135967991097->7304631244828757140 6691919043322387979 chip.call_peak_pooled 8850460944388591111 Peak (bfilt) 6691919043322387979->8850460944388591111 -5404436341916904875 Peak 6691919043322387979->-5404436341916904875 -2617367824671027891 chip.idr_ppr -5404436341916904875->-2617367824671027891 -8831680940205523049 chip.idr -5404436341916904875->-8831680940205523049 2161694743045978098 chip.overlap -5404436341916904875->2161694743045978098 -2874672071060676634 chip.overlap_ppr -5404436341916904875->-2874672071060676634 5489901796431194807 chip.pool_ta -7849577556789634013 TAG-ALIGN 5489901796431194807->-7849577556789634013 -7849577556789634013->-2105043135967991097 -7849577556789634013->6691919043322387979 -7849577556789634013->-2617367824671027891 -7849577556789634013->-8831680940205523049 -7849577556789634013->2161694743045978098 -7849577556789634013->-2874672071060676634 -1134078535271761222 chip.call_peak -2920643885724936335 Peak (bfilt) -1134078535271761222->-2920643885724936335 -1187906723150029281 Peak -1134078535271761222->-1187906723150029281 -1187906723150029281->-8831680940205523049 -1187906723150029281->2161694743045978098 2315428433109171213 chip.reproducibility_overlap -1187906723150029281->2315428433109171213 -5466589367633199288 chip.reproducibility_idr -1187906723150029281->-5466589367633199288 -5803118980498910536 chip.bam2ta 5059006437713875892 TAG-ALIGN -5803118980498910536->5059006437713875892 5059006437713875892->5489901796431194807 5059006437713875892->-1134078535271761222 4306745976799810887 chip.macs2_signal_track 5059006437713875892->4306745976799810887 5059006437713875892->-2617367824671027891 5059006437713875892->2315428433109171213 5059006437713875892->-5466589367633199288 5059006437713875892->-2874672071060676634 8035957866305462338 chip.filter 1159457747941410888 SAMstats QC 8035957866305462338->1159457747941410888 -8978422075871465616 Filt/deduped BAM 8035957866305462338->-8978422075871465616 7999094837113751131 LibCmplx QC 8035957866305462338->7999094837113751131 -8978422075871465616->-5803118980498910536 7083219746448452427 chip.jsd -8978422075871465616->7083219746448452427 6046015071949205811 chip.align 6534115052402749368 SAMstats QC 6046015071949205811->6534115052402749368 -5721134147381602186 BAM 6046015071949205811->-5721134147381602186 -5721134147381602186->8035957866305462338 8161900333541394085 chip.xcor -2743622991401612529 XCOR Plot 8161900333541394085->-2743622991401612529 -786762177888181043 BW FC 4306745976799810887->-786762177888181043 -5474651678969325715 BW p-val 4306745976799810887->-5474651678969325715 -3807590219683606520 FASTQ R1 (1) -3807590219683606520->6046015071949205811 -3807590219683606520->8161900333541394085 -8448230553955554668 FASTQ R2 (1) -8448230553955554668->6046015071949205811 -6411858108606385708 chip.call_peak -4923481705835595546 Peak (bfilt) -6411858108606385708->-4923481705835595546 -2938764603470609728 Peak -6411858108606385708->-2938764603470609728 -2938764603470609728->-8831680940205523049 -2938764603470609728->2161694743045978098 -2938764603470609728->2315428433109171213 -2938764603470609728->-5466589367633199288 -5239867812880124429 chip.bam2ta 4309154843682568827 TAG-ALIGN -5239867812880124429->4309154843682568827 4309154843682568827->5489901796431194807 4309154843682568827->-6411858108606385708 48912030897400501 chip.macs2_signal_track 4309154843682568827->48912030897400501 4309154843682568827->-2617367824671027891 4309154843682568827->2315428433109171213 4309154843682568827->-5466589367633199288 4309154843682568827->-2874672071060676634 -2301977942583814011 chip.filter 2932927104154119101 SAMstats QC -2301977942583814011->2932927104154119101 7683106772796397121 Filt/deduped BAM -2301977942583814011->7683106772796397121 -8097244386971589349 LibCmplx QC -2301977942583814011->-8097244386971589349 7683106772796397121->-5239867812880124429 7683106772796397121->7083219746448452427 4348064701860628583 chip.align -9213251932940394713 SAMstats QC 4348064701860628583->-9213251932940394713 -766048024001102301 BAM 4348064701860628583->-766048024001102301 -766048024001102301->-2301977942583814011 2404752411510760571 chip.xcor -492915142219022688 XCOR Plot 2404752411510760571->-492915142219022688 508185917109280973 BW FC 48912030897400501->508185917109280973 -9078863937641410580 BW p-val 48912030897400501->-9078863937641410580 -7731189025640416142 FASTQ R1 (1) -7731189025640416142->4348064701860628583 -7731189025640416142->2404752411510760571 9219271684898386607 FASTQ R2 (1) 9219271684898386607->4348064701860628583 5656103226517697494 chip.pool_ta_ctl -130581048363047307 TAG-ALIGN 5656103226517697494->-130581048363047307 -130581048363047307->-2105043135967991097 -130581048363047307->6691919043322387979 -130581048363047307->-1134078535271761222 -130581048363047307->4306745976799810887 -130581048363047307->-6411858108606385708 -130581048363047307->48912030897400501 -130581048363047307->-2617367824671027891 -130581048363047307->2315428433109171213 -130581048363047307->-5466589367633199288 -130581048363047307->-2874672071060676634 -2325269886217838826 chip.bam2ta_ctl 6424802214935193976 TAG-ALIGN -2325269886217838826->6424802214935193976 6424802214935193976->5656103226517697494 -256188086172813961 Filt/deduped BAM -256188086172813961->-2325269886217838826 -256188086172813961->7083219746448452427 -1969219479825808010 chip.bam2ta_ctl -4116516943141689719 TAG-ALIGN -1969219479825808010->-4116516943141689719 -4116516943141689719->5656103226517697494 -6994014040135774985 Filt/deduped BAM -6994014040135774985->-1969219479825808010 -6994014040135774985->7083219746448452427 8119418013765533152 chip.bam2ta_ctl -3118224567132146705 TAG-ALIGN 8119418013765533152->-3118224567132146705 -3118224567132146705->5656103226517697494 4739522781336471434 Filt/deduped BAM 4739522781336471434->8119418013765533152 4739522781336471434->7083219746448452427 -5007221821507109547 chip.bam2ta_ctl -7448562788724263312 TAG-ALIGN -5007221821507109547->-7448562788724263312 -7448562788724263312->5656103226517697494 8327600670953096897 Filt/deduped BAM 8327600670953096897->-5007221821507109547 8327600670953096897->7083219746448452427 -2332014733773324072 chip.bam2ta_ctl 8331965141516550308 TAG-ALIGN -2332014733773324072->8331965141516550308 8331965141516550308->5656103226517697494 3358680082999440621 Filt/deduped BAM 3358680082999440621->-2332014733773324072 3358680082999440621->7083219746448452427 -8261694272821157984 chip.bam2ta_ctl -3932386345203054898 TAG-ALIGN -8261694272821157984->-3932386345203054898 -3932386345203054898->5656103226517697494 -6405914330417626976 Filt/deduped BAM -6405914330417626976->-8261694272821157984 -6405914330417626976->7083219746448452427 -2933075924785731977 chip.bam2ta_ctl 7709029100961746780 TAG-ALIGN -2933075924785731977->7709029100961746780 7709029100961746780->5656103226517697494 -8780593653511894624 Filt/deduped BAM -8780593653511894624->-2933075924785731977 -8780593653511894624->7083219746448452427 -3702001144972249517 chip.bam2ta_ctl 5162017310095774160 TAG-ALIGN -3702001144972249517->5162017310095774160 5162017310095774160->5656103226517697494 4528744084345334387 Filt/deduped BAM 4528744084345334387->-3702001144972249517 4528744084345334387->7083219746448452427 -7726308715733485598 chip.bam2ta_ctl -2049582824459439617 TAG-ALIGN -7726308715733485598->-2049582824459439617 -2049582824459439617->5656103226517697494 -1971043722171520918 Filt/deduped BAM -1971043722171520918->-7726308715733485598 -1971043722171520918->7083219746448452427 -8336851335933801516 chip.bam2ta_ctl 2709658889119017833 TAG-ALIGN -8336851335933801516->2709658889119017833 2709658889119017833->5656103226517697494 -8169104429252717767 Filt/deduped BAM -8169104429252717767->-8336851335933801516 -8169104429252717767->7083219746448452427 8254687484864874513 chip.bam2ta_ctl -220069107008538022 TAG-ALIGN 8254687484864874513->-220069107008538022 -220069107008538022->5656103226517697494 6771902801102183000 Filt/deduped BAM 6771902801102183000->8254687484864874513 6771902801102183000->7083219746448452427 2861527816062850891 chip.bam2ta_ctl -5155366113994593690 TAG-ALIGN 2861527816062850891->-5155366113994593690 -5155366113994593690->5656103226517697494 9060135557617759197 Filt/deduped BAM 9060135557617759197->2861527816062850891 9060135557617759197->7083219746448452427 8698958769797346445 chip.bam2ta_ctl -2223215460694464968 TAG-ALIGN 8698958769797346445->-2223215460694464968 -2223215460694464968->5656103226517697494 -7758213233357877544 Filt/deduped BAM -7758213233357877544->8698958769797346445 -7758213233357877544->7083219746448452427 -193475619153499238 chip.bam2ta_ctl 8734840833741916275 TAG-ALIGN -193475619153499238->8734840833741916275 8734840833741916275->5656103226517697494 1751261622810706937 Filt/deduped BAM 1751261622810706937->-193475619153499238 1751261622810706937->7083219746448452427 3152316450984320338 chip.bam2ta_ctl -4313703988419302364 TAG-ALIGN 3152316450984320338->-4313703988419302364 -4313703988419302364->5656103226517697494 5909057680086405629 Filt/deduped BAM 5909057680086405629->3152316450984320338 5909057680086405629->7083219746448452427 -3292757518712525466 chip.bam2ta_ctl 1225168994941227890 TAG-ALIGN -3292757518712525466->1225168994941227890 1225168994941227890->5656103226517697494 8157492775035083536 Filt/deduped BAM 8157492775035083536->-3292757518712525466 8157492775035083536->7083219746448452427 3096006238622087030 chip.bam2ta_ctl 2006158699400760599 TAG-ALIGN 3096006238622087030->2006158699400760599 2006158699400760599->5656103226517697494 3914138172195120806 Filt/deduped BAM 3914138172195120806->3096006238622087030 3914138172195120806->7083219746448452427 8113169747076228544 chip.bam2ta_ctl 2371335551081573657 TAG-ALIGN 8113169747076228544->2371335551081573657 2371335551081573657->5656103226517697494 3882550828116898341 Filt/deduped BAM 3882550828116898341->8113169747076228544 3882550828116898341->7083219746448452427 -8997921373607778644 chip.bam2ta_ctl -3861780291841613386 TAG-ALIGN -8997921373607778644->-3861780291841613386 -3861780291841613386->5656103226517697494 -5952327344096329755 Filt/deduped BAM -5952327344096329755->-8997921373607778644 -5952327344096329755->7083219746448452427 -6963876900209327085 chip.bam2ta_ctl -3492159691315046797 TAG-ALIGN -6963876900209327085->-3492159691315046797 -3492159691315046797->5656103226517697494 8874429207441230958 Filt/deduped BAM 8874429207441230958->-6963876900209327085 8874429207441230958->7083219746448452427 7108176595018447459 chip.bam2ta_ctl -2340628946677531654 TAG-ALIGN 7108176595018447459->-2340628946677531654 -2340628946677531654->5656103226517697494 5794343047222556288 Filt/deduped BAM 5794343047222556288->7108176595018447459 5794343047222556288->7083219746448452427 -3382534083976267666 chip.bam2ta_ctl 8237419817647073674 TAG-ALIGN -3382534083976267666->8237419817647073674 8237419817647073674->5656103226517697494 -1820273267887087414 Filt/deduped BAM -1820273267887087414->-3382534083976267666 -1820273267887087414->7083219746448452427 4201902016171196725 chip.bam2ta_ctl -575322869886374032 TAG-ALIGN 4201902016171196725->-575322869886374032 -575322869886374032->5656103226517697494 -7453403866378068206 Filt/deduped BAM -7453403866378068206->4201902016171196725 -7453403866378068206->7083219746448452427 8298255988183372732 chip.bam2ta_ctl -2021792526099721938 TAG-ALIGN 8298255988183372732->-2021792526099721938 -2021792526099721938->5656103226517697494 -6775571027784217698 Filt/deduped BAM -6775571027784217698->8298255988183372732 -6775571027784217698->7083219746448452427 -807288092834131259 IDR Plot ppr -2617367824671027891->-807288092834131259 -1821148153313665879 IDR Peak ppr -2617367824671027891->-1821148153313665879 -1821148153313665879->-5466589367633199288 -7789085253974919141 IDR Plot rep1_vs_rep2 -8831680940205523049->-7789085253974919141 -3656203347188555545 IDR NPeak rep1_vs_rep2 -8831680940205523049->-3656203347188555545 -3656203347188555545->-5466589367633199288 7164019035743741230 Overlap Peak rep1_vs_rep2 2161694743045978098->7164019035743741230 7164019035743741230->2315428433109171213 -3759656577250073324 Overlap Peak optimal 2315428433109171213->-3759656577250073324 -6294287683631140703 Overlap reproducibility 2315428433109171213->-6294287683631140703 -2641670787413037206 IDR Peak optimal -5466589367633199288->-2641670787413037206 6486256531822229935 IDR reproducibility -5466589367633199288->6486256531822229935 3118474590627951463 Overlap Peak ppr -2874672071060676634->3118474590627951463 3118474590627951463->2315428433109171213 7432152242991697965 JSD Plot 7083219746448452427->7432152242991697965

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF784RTY.crop_101-2bp.nodup_x_ctl.pooled.276M.fc.signal.bigwig?Expires=1601331925&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=GGpWaBnC0iZ62ExHda1fB82CzMHmW2tfsixc%2BWkc0TabSKoZvdi409KqwYCIuKDIOkkdqoA%2FakPdzcWmvIavWBhsHbCLMv1Yt7JdudWnQBskClH6nPPu5z3PctCRM7dBMHoPTUmtdVBjWPk8OrXw1faf0wYKDNjfs4OKWztEsDk5PiMVrADf7QVkV7JMhDvrQmUHKxm1V4xLhezDic8HF2a%2FIePVROSxnJIGHLVAbsAWZPNX8PSzsJBBFywB%2FxZkFKZJanWJiIwbU76qQhZDDNVkSQgRwQEL%2B%2BiEJ57s4Paz4GFOc1xtIRS8%2F2a8r18IuU0dFnG3izokJJ4%2BtPtZTg%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/ddef7900-130a-4bd5-af05-d121750e26f6/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.544M.pval.signal.bigwig?Expires=1601331926&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=daLR5huXvi62kVSTrFO2v2XbIq1QUL0J2LWzsBHNjTRhk%2FknThD3pYinXABXECiO49g7W6QQ%2BkRq%2FMeffW8%2F7E%2FUI%2Bd%2BBA0EiJa2XNvDKCZns7ACfKtWlncYCxxmkPli3TfloFML347zP6REVAvfXkA1PxHTRzdVeGKEtWZywhbD4Wm2F7CqplvalcyjaOJvZKSabICp8SqFk7raXXnX4fI4HCqX7Hds2CjOg4GPC16dmwzy83UHNgmL7dmb3XMOMYrWf1N0fT9kNaplt6ANJFZfTJAwPN8N%2FSJqdfTQq21qpBR9LWjdXp5ZrXcz9WPwy%2Fku1CcyRr1cBf66rz17VA%3D%3D"
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