File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF189SGX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF189SGX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF189SGX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF189SGX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF189SGX.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF060CCV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF060CCV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF060CCV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF060CCV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF060CCV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF189SGX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF189SGX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF189SGX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF189SGX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF189SGX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF189SGX.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF060CCV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF060CCV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF060CCV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF060CCV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF060CCV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF060CCV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF189SGX.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -4068358881120281637 chip.macs2_signal_track_pooled 3309668892603171473 BW FC -4068358881120281637->3309668892603171473 8739732395570273595 BW p-val -4068358881120281637->8739732395570273595 -6326124495515091128 chip.call_peak_pooled -8015635661484690633 Peak (bfilt) -6326124495515091128->-8015635661484690633 8157738628465287131 Peak -6326124495515091128->8157738628465287131 -8255958079100803464 chip.idr_ppr 8157738628465287131->-8255958079100803464 -2591306397090964363 chip.idr 8157738628465287131->-2591306397090964363 -6028324895253712957 chip.overlap 8157738628465287131->-6028324895253712957 -6519126108583780237 chip.overlap_ppr 8157738628465287131->-6519126108583780237 -1702285225659390667 chip.pool_ta 5581901559010685731 TAG-ALIGN -1702285225659390667->5581901559010685731 5581901559010685731->-4068358881120281637 5581901559010685731->-6326124495515091128 5581901559010685731->-8255958079100803464 5581901559010685731->-2591306397090964363 5581901559010685731->-6028324895253712957 5581901559010685731->-6519126108583780237 -1705699839059155014 chip.call_peak 8858526355689734644 Peak (bfilt) -1705699839059155014->8858526355689734644 -8825619559130087684 Peak -1705699839059155014->-8825619559130087684 -8825619559130087684->-2591306397090964363 -8825619559130087684->-6028324895253712957 3844595998240239409 chip.reproducibility_overlap -8825619559130087684->3844595998240239409 -521982120682571748 chip.reproducibility_idr -8825619559130087684->-521982120682571748 1296874663241600511 chip.bam2ta 1723641042269480302 TAG-ALIGN 1296874663241600511->1723641042269480302 1723641042269480302->-1702285225659390667 1723641042269480302->-1705699839059155014 -5151687919279690769 chip.macs2_signal_track 1723641042269480302->-5151687919279690769 1723641042269480302->-8255958079100803464 1723641042269480302->3844595998240239409 1723641042269480302->-521982120682571748 1723641042269480302->-6519126108583780237 -7220038835837751436 chip.filter -571798677472100027 SAMstats QC -7220038835837751436->-571798677472100027 -2594286574958095106 Filt/deduped BAM -7220038835837751436->-2594286574958095106 163095831038245266 LibCmplx QC -7220038835837751436->163095831038245266 -2594286574958095106->1296874663241600511 -5484431503817042507 chip.jsd -2594286574958095106->-5484431503817042507 -2716546179760885468 chip.align 5549817637938377786 SAMstats QC -2716546179760885468->5549817637938377786 -3048100969296424905 BAM -2716546179760885468->-3048100969296424905 -3048100969296424905->-7220038835837751436 8793808113589156445 chip.xcor 5865107944362311642 XCOR Plot 8793808113589156445->5865107944362311642 -1560056997375741810 BW FC -5151687919279690769->-1560056997375741810 -2126660501569465242 BW p-val -5151687919279690769->-2126660501569465242 2093390912464076438 FASTQ R1 (1) 2093390912464076438->-2716546179760885468 2093390912464076438->8793808113589156445 -2516968917601148080 FASTQ R2 (1) -2516968917601148080->-2716546179760885468 -7964510611324694972 chip.call_peak -7448558589885166603 Peak (bfilt) -7964510611324694972->-7448558589885166603 -5100590547601188329 Peak -7964510611324694972->-5100590547601188329 -5100590547601188329->-2591306397090964363 -5100590547601188329->-6028324895253712957 -5100590547601188329->3844595998240239409 -5100590547601188329->-521982120682571748 5168123475818070274 chip.bam2ta 726555910859300937 TAG-ALIGN 5168123475818070274->726555910859300937 726555910859300937->-1702285225659390667 726555910859300937->-7964510611324694972 -6766460642178228139 chip.macs2_signal_track 726555910859300937->-6766460642178228139 726555910859300937->-8255958079100803464 726555910859300937->3844595998240239409 726555910859300937->-521982120682571748 726555910859300937->-6519126108583780237 -8551893628779248419 chip.filter -481022440877369545 SAMstats QC -8551893628779248419->-481022440877369545 -2935669938901440687 Filt/deduped BAM -8551893628779248419->-2935669938901440687 2168557557160489626 LibCmplx QC -8551893628779248419->2168557557160489626 -2935669938901440687->5168123475818070274 -2935669938901440687->-5484431503817042507 6079593807653593665 chip.align 7216637166859152236 SAMstats QC 6079593807653593665->7216637166859152236 2398426596993756045 BAM 6079593807653593665->2398426596993756045 2398426596993756045->-8551893628779248419 9039562174507736197 chip.xcor -1631118344259173996 XCOR Plot 9039562174507736197->-1631118344259173996 -5664465280004336980 BW FC -6766460642178228139->-5664465280004336980 -484238540164000229 BW p-val -6766460642178228139->-484238540164000229 5234416394878762450 FASTQ R1 (1) 5234416394878762450->6079593807653593665 5234416394878762450->9039562174507736197 -5455973013211364817 FASTQ R2 (1) -5455973013211364817->6079593807653593665 -9219917157024575043 chip.pool_ta_ctl 6529255071334446715 TAG-ALIGN -9219917157024575043->6529255071334446715 6529255071334446715->-4068358881120281637 6529255071334446715->-6326124495515091128 6529255071334446715->-1705699839059155014 6529255071334446715->-5151687919279690769 6529255071334446715->-7964510611324694972 6529255071334446715->-6766460642178228139 6529255071334446715->-8255958079100803464 6529255071334446715->3844595998240239409 6529255071334446715->-521982120682571748 6529255071334446715->-6519126108583780237 7827137079892510476 chip.bam2ta_ctl -7870821583967697305 TAG-ALIGN 7827137079892510476->-7870821583967697305 -7870821583967697305->-9219917157024575043 -771707569966660093 Filt/deduped BAM -771707569966660093->7827137079892510476 -771707569966660093->-5484431503817042507 -3352413124283258384 chip.bam2ta_ctl 7853534217596183462 TAG-ALIGN -3352413124283258384->7853534217596183462 7853534217596183462->-9219917157024575043 -4414052477553447829 Filt/deduped BAM -4414052477553447829->-3352413124283258384 -4414052477553447829->-5484431503817042507 -6534535148464743646 chip.bam2ta_ctl -1425856620831580829 TAG-ALIGN -6534535148464743646->-1425856620831580829 -1425856620831580829->-9219917157024575043 -5664375328866520921 Filt/deduped BAM -5664375328866520921->-6534535148464743646 -5664375328866520921->-5484431503817042507 -2497358924721090649 chip.bam2ta_ctl 7930264558344876133 TAG-ALIGN -2497358924721090649->7930264558344876133 7930264558344876133->-9219917157024575043 -2370337734002582061 Filt/deduped BAM -2370337734002582061->-2497358924721090649 -2370337734002582061->-5484431503817042507 335210452611835004 chip.bam2ta_ctl 4165807453945815217 TAG-ALIGN 335210452611835004->4165807453945815217 4165807453945815217->-9219917157024575043 5123573525201355797 Filt/deduped BAM 5123573525201355797->335210452611835004 5123573525201355797->-5484431503817042507 -7504527696550113779 chip.bam2ta_ctl -2743720803365996027 TAG-ALIGN -7504527696550113779->-2743720803365996027 -2743720803365996027->-9219917157024575043 4884062599743874343 Filt/deduped BAM 4884062599743874343->-7504527696550113779 4884062599743874343->-5484431503817042507 -6433678847939357672 chip.bam2ta_ctl -4428067365714495854 TAG-ALIGN -6433678847939357672->-4428067365714495854 -4428067365714495854->-9219917157024575043 -3810112706374337246 Filt/deduped BAM -3810112706374337246->-6433678847939357672 -3810112706374337246->-5484431503817042507 3853619653318190569 chip.bam2ta_ctl -5155422642416825486 TAG-ALIGN 3853619653318190569->-5155422642416825486 -5155422642416825486->-9219917157024575043 -5192530551485172788 Filt/deduped BAM -5192530551485172788->3853619653318190569 -5192530551485172788->-5484431503817042507 -597190740586456309 chip.bam2ta_ctl 6530867081857870510 TAG-ALIGN -597190740586456309->6530867081857870510 6530867081857870510->-9219917157024575043 3944523813412991499 Filt/deduped BAM 3944523813412991499->-597190740586456309 3944523813412991499->-5484431503817042507 -8051066361680343338 chip.bam2ta_ctl -8378081560352946259 TAG-ALIGN -8051066361680343338->-8378081560352946259 -8378081560352946259->-9219917157024575043 1897775191676526656 Filt/deduped BAM 1897775191676526656->-8051066361680343338 1897775191676526656->-5484431503817042507 -4173816612515208244 chip.bam2ta_ctl 8866007790540638313 TAG-ALIGN -4173816612515208244->8866007790540638313 8866007790540638313->-9219917157024575043 2464246485024909699 Filt/deduped BAM 2464246485024909699->-4173816612515208244 2464246485024909699->-5484431503817042507 1965071125396113692 chip.bam2ta_ctl -6967977946933366536 TAG-ALIGN 1965071125396113692->-6967977946933366536 -6967977946933366536->-9219917157024575043 -8837674783632727289 Filt/deduped BAM -8837674783632727289->1965071125396113692 -8837674783632727289->-5484431503817042507 7498144423109040170 chip.bam2ta_ctl -6547175691880087347 TAG-ALIGN 7498144423109040170->-6547175691880087347 -6547175691880087347->-9219917157024575043 -4504116460008349453 Filt/deduped BAM -4504116460008349453->7498144423109040170 -4504116460008349453->-5484431503817042507 -2793064888255096551 chip.bam2ta_ctl 5071334359976931754 TAG-ALIGN -2793064888255096551->5071334359976931754 5071334359976931754->-9219917157024575043 2715441054153966842 Filt/deduped BAM 2715441054153966842->-2793064888255096551 2715441054153966842->-5484431503817042507 5704311165691522759 chip.bam2ta_ctl 6102791744970334536 TAG-ALIGN 5704311165691522759->6102791744970334536 6102791744970334536->-9219917157024575043 353470483055771787 Filt/deduped BAM 353470483055771787->5704311165691522759 353470483055771787->-5484431503817042507 9066225379591598636 chip.bam2ta_ctl -6177352452945075087 TAG-ALIGN 9066225379591598636->-6177352452945075087 -6177352452945075087->-9219917157024575043 831940925386710444 Filt/deduped BAM 831940925386710444->9066225379591598636 831940925386710444->-5484431503817042507 781534557658312165 chip.bam2ta_ctl 4300705806575778312 TAG-ALIGN 781534557658312165->4300705806575778312 4300705806575778312->-9219917157024575043 -1355876906697536625 Filt/deduped BAM -1355876906697536625->781534557658312165 -1355876906697536625->-5484431503817042507 -4654098471190164115 chip.bam2ta_ctl -9176605847698724459 TAG-ALIGN -4654098471190164115->-9176605847698724459 -9176605847698724459->-9219917157024575043 -7688661914355826005 Filt/deduped BAM -7688661914355826005->-4654098471190164115 -7688661914355826005->-5484431503817042507 3389223297214776464 chip.bam2ta_ctl 1899992466762707781 TAG-ALIGN 3389223297214776464->1899992466762707781 1899992466762707781->-9219917157024575043 -1310243217388439197 Filt/deduped BAM -1310243217388439197->3389223297214776464 -1310243217388439197->-5484431503817042507 1052126326723017617 chip.bam2ta_ctl 3268399484488556918 TAG-ALIGN 1052126326723017617->3268399484488556918 3268399484488556918->-9219917157024575043 7832758348517122908 Filt/deduped BAM 7832758348517122908->1052126326723017617 7832758348517122908->-5484431503817042507 7841733796940897068 chip.bam2ta_ctl 7471235101256355259 TAG-ALIGN 7841733796940897068->7471235101256355259 7471235101256355259->-9219917157024575043 2462165588680814827 Filt/deduped BAM 2462165588680814827->7841733796940897068 2462165588680814827->-5484431503817042507 -7417002691819346357 chip.bam2ta_ctl -2610162617048218760 TAG-ALIGN -7417002691819346357->-2610162617048218760 -2610162617048218760->-9219917157024575043 -7518984852883185586 Filt/deduped BAM -7518984852883185586->-7417002691819346357 -7518984852883185586->-5484431503817042507 -4807751086443953530 chip.bam2ta_ctl 4612928179132542279 TAG-ALIGN -4807751086443953530->4612928179132542279 4612928179132542279->-9219917157024575043 -3427272243186342973 Filt/deduped BAM -3427272243186342973->-4807751086443953530 -3427272243186342973->-5484431503817042507 5826450338590256556 chip.bam2ta_ctl -5897797337914008036 TAG-ALIGN 5826450338590256556->-5897797337914008036 -5897797337914008036->-9219917157024575043 8584747096977379279 Filt/deduped BAM 8584747096977379279->5826450338590256556 8584747096977379279->-5484431503817042507 6758114876447585085 IDR Plot ppr -8255958079100803464->6758114876447585085 -6923172882476635065 IDR Peak ppr -8255958079100803464->-6923172882476635065 -6923172882476635065->-521982120682571748 -2327497563007674035 IDR Plot rep1_vs_rep2 -2591306397090964363->-2327497563007674035 928172641962039810 IDR NPeak rep1_vs_rep2 -2591306397090964363->928172641962039810 928172641962039810->-521982120682571748 -6429516230240603284 Overlap Peak rep1_vs_rep2 -6028324895253712957->-6429516230240603284 -6429516230240603284->3844595998240239409 7598207430085904549 Overlap Peak optimal 3844595998240239409->7598207430085904549 -7418699115872939476 Overlap reproducibility 3844595998240239409->-7418699115872939476 8260312382299172832 IDR Peak optimal -521982120682571748->8260312382299172832 4913355647569104231 IDR reproducibility -521982120682571748->4913355647569104231 5823907037767473338 Overlap Peak ppr -6519126108583780237->5823907037767473338 5823907037767473338->3844595998240239409 8242689413197585760 JSD Plot -5484431503817042507->8242689413197585760

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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