File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF189SGX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF189SGX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF189SGX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF189SGX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF189SGX.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF060CCV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF060CCV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF060CCV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF060CCV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF060CCV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup.pr1_x_ctl.pooled.291M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup.pr2_x_ctl.pooled.291M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF189SGX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF189SGX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF189SGX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF189SGX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF189SGX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF189SGX.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup.pr1_x_ctl.pooled.248M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup.pr2_x_ctl.pooled.248M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF060CCV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF060CCV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF060CCV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF060CCV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF060CCV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF060CCV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF189SGX.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/2c311519-2e5c-4697-a14b-636cd2911610/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF060CCV.crop_101-2bp.nodup_x_ctl.pooled.248M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -979644436569874297 chip.macs2_signal_track_pooled 4148459702782560957 BW FC -979644436569874297->4148459702782560957 5989531866875518548 BW p-val -979644436569874297->5989531866875518548 480632329835563436 chip.call_peak_pooled 1014880126756223751 Peak (bfilt) 480632329835563436->1014880126756223751 -2691073124193003962 Peak 480632329835563436->-2691073124193003962 4941377226621114385 chip.idr_ppr -2691073124193003962->4941377226621114385 8692368919581949539 chip.idr -2691073124193003962->8692368919581949539 -1640171438932755971 chip.overlap -2691073124193003962->-1640171438932755971 -8312745601805854025 chip.overlap_ppr -2691073124193003962->-8312745601805854025 982283123055972791 chip.pool_ta 5697853010715589953 TAG-ALIGN 982283123055972791->5697853010715589953 5697853010715589953->-979644436569874297 5697853010715589953->480632329835563436 5697853010715589953->4941377226621114385 5697853010715589953->8692368919581949539 5697853010715589953->-1640171438932755971 5697853010715589953->-8312745601805854025 5669387490626715079 chip.call_peak 21690047717516342 Peak (bfilt) 5669387490626715079->21690047717516342 7870426165903486125 Peak 5669387490626715079->7870426165903486125 7870426165903486125->8692368919581949539 7870426165903486125->-1640171438932755971 -7090074977135097119 chip.reproducibility_overlap 7870426165903486125->-7090074977135097119 3825965552397222666 chip.reproducibility_idr 7870426165903486125->3825965552397222666 -9136326767049305547 chip.bam2ta 9090556693023964357 TAG-ALIGN -9136326767049305547->9090556693023964357 9090556693023964357->982283123055972791 9090556693023964357->5669387490626715079 -8942178030420287032 chip.macs2_signal_track 9090556693023964357->-8942178030420287032 9090556693023964357->4941377226621114385 9090556693023964357->-7090074977135097119 9090556693023964357->3825965552397222666 9090556693023964357->-8312745601805854025 9200061294560449124 chip.filter 7369219727605091063 SAMstats QC 9200061294560449124->7369219727605091063 -2180546590779220846 Filt/deduped BAM 9200061294560449124->-2180546590779220846 2418189423402820360 LibCmplx QC 9200061294560449124->2418189423402820360 -2180546590779220846->-9136326767049305547 6774539961569151400 chip.jsd -2180546590779220846->6774539961569151400 -2988466954669979033 chip.align -6139874520915378387 SAMstats QC -2988466954669979033->-6139874520915378387 -9067051578043950839 BAM -2988466954669979033->-9067051578043950839 -9067051578043950839->9200061294560449124 -2256511708757589315 chip.xcor -628421513354486557 XCOR Plot -2256511708757589315->-628421513354486557 -6316787357918704016 BW FC -8942178030420287032->-6316787357918704016 -8859228663008520744 BW p-val -8942178030420287032->-8859228663008520744 4035592993576909448 FASTQ R1 (1) 4035592993576909448->-2988466954669979033 4035592993576909448->-2256511708757589315 8202296131661294553 FASTQ R2 (1) 8202296131661294553->-2988466954669979033 -86662935672824726 chip.call_peak 6079527881809335311 Peak (bfilt) -86662935672824726->6079527881809335311 3302440142866629743 Peak -86662935672824726->3302440142866629743 3302440142866629743->8692368919581949539 3302440142866629743->-1640171438932755971 3302440142866629743->-7090074977135097119 3302440142866629743->3825965552397222666 705800421648414712 chip.bam2ta 7230171642438685816 TAG-ALIGN 705800421648414712->7230171642438685816 7230171642438685816->982283123055972791 7230171642438685816->-86662935672824726 -7115471053748607797 chip.macs2_signal_track 7230171642438685816->-7115471053748607797 7230171642438685816->4941377226621114385 7230171642438685816->-7090074977135097119 7230171642438685816->3825965552397222666 7230171642438685816->-8312745601805854025 4422165719146036517 chip.filter -7631097621317470352 SAMstats QC 4422165719146036517->-7631097621317470352 5046841555158209651 Filt/deduped BAM 4422165719146036517->5046841555158209651 -157256424307790055 LibCmplx QC 4422165719146036517->-157256424307790055 5046841555158209651->705800421648414712 5046841555158209651->6774539961569151400 4181670590260125596 chip.align -6614973830927030515 SAMstats QC 4181670590260125596->-6614973830927030515 274788966164288575 BAM 4181670590260125596->274788966164288575 274788966164288575->4422165719146036517 -6132863791894150407 chip.xcor 7795139164264905634 XCOR Plot -6132863791894150407->7795139164264905634 -820334800147254326 BW FC -7115471053748607797->-820334800147254326 2650643305659324230 BW p-val -7115471053748607797->2650643305659324230 -223933301177449292 FASTQ R1 (1) -223933301177449292->4181670590260125596 -223933301177449292->-6132863791894150407 -8675842885078196693 FASTQ R2 (1) -8675842885078196693->4181670590260125596 -1427585185303676881 chip.pool_ta_ctl -1191250180908483756 TAG-ALIGN -1427585185303676881->-1191250180908483756 -1191250180908483756->-979644436569874297 -1191250180908483756->480632329835563436 -1191250180908483756->5669387490626715079 -1191250180908483756->-8942178030420287032 -1191250180908483756->-86662935672824726 -1191250180908483756->-7115471053748607797 -1191250180908483756->4941377226621114385 -1191250180908483756->-7090074977135097119 -1191250180908483756->3825965552397222666 -1191250180908483756->-8312745601805854025 -5148273136007897867 chip.bam2ta_ctl 2633280075905146206 TAG-ALIGN -5148273136007897867->2633280075905146206 2633280075905146206->-1427585185303676881 -4944209140545155291 Filt/deduped BAM -4944209140545155291->-5148273136007897867 -4944209140545155291->6774539961569151400 -8339130281735591210 chip.bam2ta_ctl 5448722330806234359 TAG-ALIGN -8339130281735591210->5448722330806234359 5448722330806234359->-1427585185303676881 582920446558315726 Filt/deduped BAM 582920446558315726->-8339130281735591210 582920446558315726->6774539961569151400 5858289318645742850 chip.bam2ta_ctl 3642156032752547384 TAG-ALIGN 5858289318645742850->3642156032752547384 3642156032752547384->-1427585185303676881 -6278846557787804998 Filt/deduped BAM -6278846557787804998->5858289318645742850 -6278846557787804998->6774539961569151400 399787187637389374 chip.bam2ta_ctl -6309060211663447048 TAG-ALIGN 399787187637389374->-6309060211663447048 -6309060211663447048->-1427585185303676881 2650110549199200213 Filt/deduped BAM 2650110549199200213->399787187637389374 2650110549199200213->6774539961569151400 7334365469559523400 chip.bam2ta_ctl 5628526528936373904 TAG-ALIGN 7334365469559523400->5628526528936373904 5628526528936373904->-1427585185303676881 6851068813741856294 Filt/deduped BAM 6851068813741856294->7334365469559523400 6851068813741856294->6774539961569151400 -3559207413072596921 chip.bam2ta_ctl 2143444456963626371 TAG-ALIGN -3559207413072596921->2143444456963626371 2143444456963626371->-1427585185303676881 1059093511253205243 Filt/deduped BAM 1059093511253205243->-3559207413072596921 1059093511253205243->6774539961569151400 3777754035817799989 chip.bam2ta_ctl 2876481543368589466 TAG-ALIGN 3777754035817799989->2876481543368589466 2876481543368589466->-1427585185303676881 2169404634150692707 Filt/deduped BAM 2169404634150692707->3777754035817799989 2169404634150692707->6774539961569151400 9178080279916863108 chip.bam2ta_ctl 4393888116925960589 TAG-ALIGN 9178080279916863108->4393888116925960589 4393888116925960589->-1427585185303676881 -2119224772327644360 Filt/deduped BAM -2119224772327644360->9178080279916863108 -2119224772327644360->6774539961569151400 -4800779929542115292 chip.bam2ta_ctl 4560364831013514156 TAG-ALIGN -4800779929542115292->4560364831013514156 4560364831013514156->-1427585185303676881 5378513565439755970 Filt/deduped BAM 5378513565439755970->-4800779929542115292 5378513565439755970->6774539961569151400 -9185912486931012576 chip.bam2ta_ctl -9133341557797343553 TAG-ALIGN -9185912486931012576->-9133341557797343553 -9133341557797343553->-1427585185303676881 -9083502758580239696 Filt/deduped BAM -9083502758580239696->-9185912486931012576 -9083502758580239696->6774539961569151400 -7224697758379938769 chip.bam2ta_ctl 1985361693748467966 TAG-ALIGN -7224697758379938769->1985361693748467966 1985361693748467966->-1427585185303676881 -8832360730751558423 Filt/deduped BAM -8832360730751558423->-7224697758379938769 -8832360730751558423->6774539961569151400 8448889813617358600 chip.bam2ta_ctl 8777442163815064327 TAG-ALIGN 8448889813617358600->8777442163815064327 8777442163815064327->-1427585185303676881 -7292138708305714094 Filt/deduped BAM -7292138708305714094->8448889813617358600 -7292138708305714094->6774539961569151400 -5877082305492649321 chip.bam2ta_ctl 1328801951406804199 TAG-ALIGN -5877082305492649321->1328801951406804199 1328801951406804199->-1427585185303676881 84388923572357036 Filt/deduped BAM 84388923572357036->-5877082305492649321 84388923572357036->6774539961569151400 -8228462834680770450 chip.bam2ta_ctl 8930442508987490388 TAG-ALIGN -8228462834680770450->8930442508987490388 8930442508987490388->-1427585185303676881 -7777264245109737613 Filt/deduped BAM -7777264245109737613->-8228462834680770450 -7777264245109737613->6774539961569151400 -8438366206080890943 chip.bam2ta_ctl 1284717230784422127 TAG-ALIGN -8438366206080890943->1284717230784422127 1284717230784422127->-1427585185303676881 -477574251321897892 Filt/deduped BAM -477574251321897892->-8438366206080890943 -477574251321897892->6774539961569151400 2834470081118958402 chip.bam2ta_ctl -5410195076542832706 TAG-ALIGN 2834470081118958402->-5410195076542832706 -5410195076542832706->-1427585185303676881 -5850562494039193113 Filt/deduped BAM -5850562494039193113->2834470081118958402 -5850562494039193113->6774539961569151400 -4587476823291425916 chip.bam2ta_ctl -5759675568010352548 TAG-ALIGN -4587476823291425916->-5759675568010352548 -5759675568010352548->-1427585185303676881 -7224997219316600950 Filt/deduped BAM -7224997219316600950->-4587476823291425916 -7224997219316600950->6774539961569151400 6715864783329882159 chip.bam2ta_ctl -3584839327795676957 TAG-ALIGN 6715864783329882159->-3584839327795676957 -3584839327795676957->-1427585185303676881 -5083575801019851337 Filt/deduped BAM -5083575801019851337->6715864783329882159 -5083575801019851337->6774539961569151400 7351309697911047287 chip.bam2ta_ctl -3246708118533731372 TAG-ALIGN 7351309697911047287->-3246708118533731372 -3246708118533731372->-1427585185303676881 -8419789342848997665 Filt/deduped BAM -8419789342848997665->7351309697911047287 -8419789342848997665->6774539961569151400 -6335414331861342329 chip.bam2ta_ctl -2415191490901011494 TAG-ALIGN -6335414331861342329->-2415191490901011494 -2415191490901011494->-1427585185303676881 7417180295403305622 Filt/deduped BAM 7417180295403305622->-6335414331861342329 7417180295403305622->6774539961569151400 -9216552283134280645 chip.bam2ta_ctl 5664064003115208447 TAG-ALIGN -9216552283134280645->5664064003115208447 5664064003115208447->-1427585185303676881 9107121825331040200 Filt/deduped BAM 9107121825331040200->-9216552283134280645 9107121825331040200->6774539961569151400 4991551698283353127 chip.bam2ta_ctl 2147955416709599518 TAG-ALIGN 4991551698283353127->2147955416709599518 2147955416709599518->-1427585185303676881 -5240343477584848188 Filt/deduped BAM -5240343477584848188->4991551698283353127 -5240343477584848188->6774539961569151400 5556195834784175591 chip.bam2ta_ctl 447522558381809841 TAG-ALIGN 5556195834784175591->447522558381809841 447522558381809841->-1427585185303676881 -1060716242819743480 Filt/deduped BAM -1060716242819743480->5556195834784175591 -1060716242819743480->6774539961569151400 4765079565076174979 chip.bam2ta_ctl 4696531753233414190 TAG-ALIGN 4765079565076174979->4696531753233414190 4696531753233414190->-1427585185303676881 -6235505087049161342 Filt/deduped BAM -6235505087049161342->4765079565076174979 -6235505087049161342->6774539961569151400 2016914266265027839 IDR Plot ppr 4941377226621114385->2016914266265027839 -1877207585865565805 IDR Peak ppr 4941377226621114385->-1877207585865565805 -1877207585865565805->3825965552397222666 -869978793900118451 IDR Plot rep1_vs_rep2 8692368919581949539->-869978793900118451 -2571075195562249557 IDR NPeak rep1_vs_rep2 8692368919581949539->-2571075195562249557 -2571075195562249557->3825965552397222666 -651163319685265579 Overlap Peak rep1_vs_rep2 -1640171438932755971->-651163319685265579 -651163319685265579->-7090074977135097119 -3445250436335036225 Overlap Peak optimal -7090074977135097119->-3445250436335036225 -8283320010280145831 Overlap reproducibility -7090074977135097119->-8283320010280145831 779137062377859255 IDR Peak optimal 3825965552397222666->779137062377859255 3027214508673786239 IDR reproducibility 3825965552397222666->3027214508673786239 6604315824916111833 Overlap Peak ppr -8312745601805854025->6604315824916111833 6604315824916111833->-7090074977135097119 -3493335102632079618 JSD Plot 6774539961569151400->-3493335102632079618

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF189SGX.crop_101-2bp.nodup_x_ctl.pooled.291M.fc.signal.bigwig?Expires=1601331360&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=pbQb7MBa%2Bx7FUMLqQqnnQRjKStJzpoWBvkAxEXXzcCjYIleev3cWDL%2BsjSMJLkto3Doke%2B3ZHivnAU69IT02nlKBZWx4au4WHpPVYgIb%2FFxqHSmbg%2BMIoBYYzxEX%2FE%2Bdw3X2dGqFmEOW2C7h0NJtTq%2FJglciSZauebdy%2FWFt1OoE85%2FIeeJHIn20AIytoShDjI3%2FCcmAa4JOWWozK4p4M2f%2FeE%2F4lbBxdxtl95xYhkcXoaaUH5VSDHpXY3ck1Z9719Q5SMFq6zR%2BuY2kh6pOc0kHmfKEiJsXS6p1BYBSXDbx4pCWhgdh0MkGwKsIGt0LkPzb51S3o9qysaPDTF9QlA%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig?Expires=1601331360&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=wA7MAZlX033zPKB2XI6%2FuVUNHADkHWFDrr3V%2FNJQmx5w6fglucIukyWIe9mrjiAjif7iv2Ma652Mp53tUOwNDQkGh1wy2hTPSUSx1Em8Ch0mnYlCVaBvmmODH4mdogCEUPzzUznrZZY1zUNuyn0LZnQ4b4OqSFWfFzAe%2B6uTQ59AOpm8WpPMP902gDSKBLH7vacaHSFSByYZemLTOLJwrKpbEgrK5mAOxJDuxcS86mjBilUEnJULYz2cu0WWL5Ygqwb8SP1uF%2B43iXERVUUcg%2FQJaxwZfy6IbQGfM5mDBhxONsTGgv8MwpHRGvPbdDr4kKSLV86f0v121V3VNfMuVw%3D%3D"
track type=bigWig name="MACS2 fc (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d5053ef4-5773-451b-af44-ed46bc47ed89/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig?Expires=1601331360&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Kz11oYInUJ2eol1QITyRCJfcwgKf5JHCghVPi1Gz35mzACl5i%2BnE9SjwR96ET5vO83r8D69NRekksmC7FtCLbDwzvw9eQsvcz0lyUG5jdJjl2q5s22Jfam7s3gLutiD76AgOf5Kz1WezC7A4UvHFFa1qI5zfDWkJbvLQlF14yDtx1WVDnII0l4hmHrG8M6Epv2un3H3ditqWGHqyfyHxUVydZEiJURigeXt7U4EkKLCISJXE7k3kySQmyVs4Yrup1W65vKZxXRpXQ8URJq48Tu8LrEZUUdaULfZ2QPC1mPYmuUPaqZILOu7Fu17HLvUpaw6doIjiPoHH8r1sJgBlPw%3D%3D"
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