File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF549SRV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF549SRV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF549SRV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF549SRV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF549SRV.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF774IKE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF774IKE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774IKE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774IKE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF774IKE.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.366M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.366M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.366M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF549SRV.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF549SRV.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF549SRV.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF549SRV.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF549SRV.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF549SRV.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF549SRV.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF549SRV.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774IKE.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774IKE.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774IKE.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774IKE.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774IKE.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774IKE.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774IKE.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774IKE.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.366M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549SRV.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549SRV.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF549SRV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF549SRV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF549SRV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF549SRV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF549SRV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF549SRV.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774IKE.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774IKE.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF774IKE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF774IKE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF774IKE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF774IKE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774IKE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774IKE.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF549SRV.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/c5f0fcb8-a80f-4dba-b120-469cfd50fe44/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.366M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.366M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF549SRV.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/568a21f6-e7d2-47b6-8b3d-b06bfcc093ac/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF774IKE.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 8102508404635259228 chip.macs2_signal_track_pooled 6073167661458276743 BW FC 8102508404635259228->6073167661458276743 8867735431602064655 BW p-val 8102508404635259228->8867735431602064655 -3518981844368326919 chip.call_peak_pooled -2754179003598066981 Peak (bfilt) -3518981844368326919->-2754179003598066981 3046641324106036498 Peak -3518981844368326919->3046641324106036498 -3120510299552158387 chip.idr_ppr 3046641324106036498->-3120510299552158387 -6228427142687454866 chip.idr 3046641324106036498->-6228427142687454866 6711566430498669492 chip.overlap 3046641324106036498->6711566430498669492 7274727265736754254 chip.overlap_ppr 3046641324106036498->7274727265736754254 -8822490354394814784 chip.pool_ta -2676009771854190508 TAG-ALIGN -8822490354394814784->-2676009771854190508 -2676009771854190508->8102508404635259228 -2676009771854190508->-3518981844368326919 -2676009771854190508->-3120510299552158387 -2676009771854190508->-6228427142687454866 -2676009771854190508->6711566430498669492 -2676009771854190508->7274727265736754254 -3971218966821538250 chip.call_peak -421189102748288325 Peak (bfilt) -3971218966821538250->-421189102748288325 7973386576799961312 Peak -3971218966821538250->7973386576799961312 7973386576799961312->-6228427142687454866 7973386576799961312->6711566430498669492 -4505961815284023253 chip.reproducibility_overlap 7973386576799961312->-4505961815284023253 1176146309227288294 chip.reproducibility_idr 7973386576799961312->1176146309227288294 4455581342061360332 chip.bam2ta 3781356860555765519 TAG-ALIGN 4455581342061360332->3781356860555765519 3781356860555765519->-8822490354394814784 3781356860555765519->-3971218966821538250 -5877106873528864100 chip.macs2_signal_track 3781356860555765519->-5877106873528864100 3781356860555765519->-3120510299552158387 3781356860555765519->-4505961815284023253 3781356860555765519->1176146309227288294 3781356860555765519->7274727265736754254 -7670938036430372913 chip.filter -2013317259791013279 SAMstats QC -7670938036430372913->-2013317259791013279 -7771237564026063822 Filt/deduped BAM -7670938036430372913->-7771237564026063822 -2702282729456821373 LibCmplx QC -7670938036430372913->-2702282729456821373 -7771237564026063822->4455581342061360332 -9025450810875854173 chip.jsd -7771237564026063822->-9025450810875854173 6338654739207606963 chip.align 3991882718514745522 SAMstats QC 6338654739207606963->3991882718514745522 301889920786833029 BAM 6338654739207606963->301889920786833029 301889920786833029->-7670938036430372913 8172863282136412129 chip.xcor -6736446171558490063 XCOR Plot 8172863282136412129->-6736446171558490063 6338705628812406382 BW FC -5877106873528864100->6338705628812406382 -4248026286430925938 BW p-val -5877106873528864100->-4248026286430925938 -3012957086374981293 FASTQ R1 (1) -3012957086374981293->6338654739207606963 -3012957086374981293->8172863282136412129 -824287496080313251 FASTQ R2 (1) -824287496080313251->6338654739207606963 8346934049826180474 chip.call_peak -5432956660184328988 Peak (bfilt) 8346934049826180474->-5432956660184328988 -3930147979748374282 Peak 8346934049826180474->-3930147979748374282 -3930147979748374282->-6228427142687454866 -3930147979748374282->6711566430498669492 -3930147979748374282->-4505961815284023253 -3930147979748374282->1176146309227288294 -8672558409442393418 chip.bam2ta -263085850530391283 TAG-ALIGN -8672558409442393418->-263085850530391283 -263085850530391283->-8822490354394814784 -263085850530391283->8346934049826180474 76759068035300599 chip.macs2_signal_track -263085850530391283->76759068035300599 -263085850530391283->-3120510299552158387 -263085850530391283->-4505961815284023253 -263085850530391283->1176146309227288294 -263085850530391283->7274727265736754254 7707475588149697582 chip.filter -827297492088376114 SAMstats QC 7707475588149697582->-827297492088376114 -924198745301727895 Filt/deduped BAM 7707475588149697582->-924198745301727895 2243798583242800622 LibCmplx QC 7707475588149697582->2243798583242800622 -924198745301727895->-8672558409442393418 -924198745301727895->-9025450810875854173 2232518592998108267 chip.align 2786360656293209217 SAMstats QC 2232518592998108267->2786360656293209217 3813653896811926213 BAM 2232518592998108267->3813653896811926213 3813653896811926213->7707475588149697582 2295966510198615929 chip.xcor -8248128552215849771 XCOR Plot 2295966510198615929->-8248128552215849771 3195755813245917575 BW FC 76759068035300599->3195755813245917575 -920360165607031432 BW p-val 76759068035300599->-920360165607031432 8419352847965354751 FASTQ R1 (1) 8419352847965354751->2232518592998108267 8419352847965354751->2295966510198615929 6374884541887796314 FASTQ R2 (1) 6374884541887796314->2232518592998108267 4000899236597847915 chip.pool_ta_ctl 3450288545685627874 TAG-ALIGN 4000899236597847915->3450288545685627874 3450288545685627874->8102508404635259228 3450288545685627874->-3518981844368326919 3450288545685627874->-3971218966821538250 3450288545685627874->-5877106873528864100 3450288545685627874->8346934049826180474 3450288545685627874->76759068035300599 3450288545685627874->-3120510299552158387 3450288545685627874->-4505961815284023253 3450288545685627874->1176146309227288294 3450288545685627874->7274727265736754254 572962450252644855 chip.bam2ta_ctl -7234569918166379384 TAG-ALIGN 572962450252644855->-7234569918166379384 -7234569918166379384->4000899236597847915 1700843594995016000 Filt/deduped BAM 1700843594995016000->572962450252644855 1700843594995016000->-9025450810875854173 3007827925217357603 chip.bam2ta_ctl 6940996883600104001 TAG-ALIGN 3007827925217357603->6940996883600104001 6940996883600104001->4000899236597847915 5167862673919926676 Filt/deduped BAM 5167862673919926676->3007827925217357603 5167862673919926676->-9025450810875854173 5602853851777017438 chip.bam2ta_ctl 549677588480696676 TAG-ALIGN 5602853851777017438->549677588480696676 549677588480696676->4000899236597847915 -8982906904031807817 Filt/deduped BAM -8982906904031807817->5602853851777017438 -8982906904031807817->-9025450810875854173 -5713682326273133494 chip.bam2ta_ctl 3414234947180510701 TAG-ALIGN -5713682326273133494->3414234947180510701 3414234947180510701->4000899236597847915 4980965864517054363 Filt/deduped BAM 4980965864517054363->-5713682326273133494 4980965864517054363->-9025450810875854173 -1489307404504384620 chip.bam2ta_ctl 8294610761556576909 TAG-ALIGN -1489307404504384620->8294610761556576909 8294610761556576909->4000899236597847915 4348528890187296596 Filt/deduped BAM 4348528890187296596->-1489307404504384620 4348528890187296596->-9025450810875854173 -4551379491055800364 chip.bam2ta_ctl 849950000010685774 TAG-ALIGN -4551379491055800364->849950000010685774 849950000010685774->4000899236597847915 4555886679749670766 Filt/deduped BAM 4555886679749670766->-4551379491055800364 4555886679749670766->-9025450810875854173 6243956124782984145 chip.bam2ta_ctl -4196965881484980639 TAG-ALIGN 6243956124782984145->-4196965881484980639 -4196965881484980639->4000899236597847915 -8896635010166415605 Filt/deduped BAM -8896635010166415605->6243956124782984145 -8896635010166415605->-9025450810875854173 -7441375072775828391 chip.bam2ta_ctl 6413967193671563638 TAG-ALIGN -7441375072775828391->6413967193671563638 6413967193671563638->4000899236597847915 7403972824197668521 Filt/deduped BAM 7403972824197668521->-7441375072775828391 7403972824197668521->-9025450810875854173 222066393487047767 chip.bam2ta_ctl -4418325882359855261 TAG-ALIGN 222066393487047767->-4418325882359855261 -4418325882359855261->4000899236597847915 -5780662815803999751 Filt/deduped BAM -5780662815803999751->222066393487047767 -5780662815803999751->-9025450810875854173 -6262575480374198248 chip.bam2ta_ctl -5755907549117602739 TAG-ALIGN -6262575480374198248->-5755907549117602739 -5755907549117602739->4000899236597847915 4105781336906885487 Filt/deduped BAM 4105781336906885487->-6262575480374198248 4105781336906885487->-9025450810875854173 6003370246065065448 chip.bam2ta_ctl 2148590890122741536 TAG-ALIGN 6003370246065065448->2148590890122741536 2148590890122741536->4000899236597847915 -2570941478425911303 Filt/deduped BAM -2570941478425911303->6003370246065065448 -2570941478425911303->-9025450810875854173 684995591798188391 chip.bam2ta_ctl -5393913909628440350 TAG-ALIGN 684995591798188391->-5393913909628440350 -5393913909628440350->4000899236597847915 5375857008307864863 Filt/deduped BAM 5375857008307864863->684995591798188391 5375857008307864863->-9025450810875854173 -1299632265175202666 chip.bam2ta_ctl 4621407498303881537 TAG-ALIGN -1299632265175202666->4621407498303881537 4621407498303881537->4000899236597847915 -7140026785800498734 Filt/deduped BAM -7140026785800498734->-1299632265175202666 -7140026785800498734->-9025450810875854173 -678715580527339960 chip.bam2ta_ctl 5111081061351892342 TAG-ALIGN -678715580527339960->5111081061351892342 5111081061351892342->4000899236597847915 5710838113553487410 Filt/deduped BAM 5710838113553487410->-678715580527339960 5710838113553487410->-9025450810875854173 -3674628586223161466 chip.bam2ta_ctl -8904958422430182348 TAG-ALIGN -3674628586223161466->-8904958422430182348 -8904958422430182348->4000899236597847915 2783964900963729987 Filt/deduped BAM 2783964900963729987->-3674628586223161466 2783964900963729987->-9025450810875854173 -7190017539479302821 chip.bam2ta_ctl -284723870887495772 TAG-ALIGN -7190017539479302821->-284723870887495772 -284723870887495772->4000899236597847915 -1984127366244495335 Filt/deduped BAM -1984127366244495335->-7190017539479302821 -1984127366244495335->-9025450810875854173 -2797593154063939115 chip.bam2ta_ctl -7371492284485314001 TAG-ALIGN -2797593154063939115->-7371492284485314001 -7371492284485314001->4000899236597847915 2823600548593690727 Filt/deduped BAM 2823600548593690727->-2797593154063939115 2823600548593690727->-9025450810875854173 -6727464345660797937 chip.bam2ta_ctl 4051361565387869296 TAG-ALIGN -6727464345660797937->4051361565387869296 4051361565387869296->4000899236597847915 -4346725638776830513 Filt/deduped BAM -4346725638776830513->-6727464345660797937 -4346725638776830513->-9025450810875854173 -2735670686107137909 chip.bam2ta_ctl -3962492831597676485 TAG-ALIGN -2735670686107137909->-3962492831597676485 -3962492831597676485->4000899236597847915 -2341549167176797409 Filt/deduped BAM -2341549167176797409->-2735670686107137909 -2341549167176797409->-9025450810875854173 -6008540396302668863 chip.bam2ta_ctl -7701362522027356316 TAG-ALIGN -6008540396302668863->-7701362522027356316 -7701362522027356316->4000899236597847915 -4435301593871500817 Filt/deduped BAM -4435301593871500817->-6008540396302668863 -4435301593871500817->-9025450810875854173 46851930614921329 chip.bam2ta_ctl 6102882433829263172 TAG-ALIGN 46851930614921329->6102882433829263172 6102882433829263172->4000899236597847915 5285484114605518738 Filt/deduped BAM 5285484114605518738->46851930614921329 5285484114605518738->-9025450810875854173 6953509423947726566 chip.bam2ta_ctl 1201163481454887019 TAG-ALIGN 6953509423947726566->1201163481454887019 1201163481454887019->4000899236597847915 1860217416997306855 Filt/deduped BAM 1860217416997306855->6953509423947726566 1860217416997306855->-9025450810875854173 -4905741243128449739 chip.bam2ta_ctl 7615365258265521321 TAG-ALIGN -4905741243128449739->7615365258265521321 7615365258265521321->4000899236597847915 3531537251829712695 Filt/deduped BAM 3531537251829712695->-4905741243128449739 3531537251829712695->-9025450810875854173 2053581801616686649 chip.bam2ta_ctl 4776063574085364694 TAG-ALIGN 2053581801616686649->4776063574085364694 4776063574085364694->4000899236597847915 -1973167942885205575 Filt/deduped BAM -1973167942885205575->2053581801616686649 -1973167942885205575->-9025450810875854173 -8378119614605429922 IDR Plot ppr -3120510299552158387->-8378119614605429922 1077948338697004291 IDR Peak ppr -3120510299552158387->1077948338697004291 1077948338697004291->1176146309227288294 3336402428638964366 IDR Plot rep1_vs_rep2 -6228427142687454866->3336402428638964366 4596299111362902965 IDR NPeak rep1_vs_rep2 -6228427142687454866->4596299111362902965 4596299111362902965->1176146309227288294 -9189992207970627641 Overlap Peak rep1_vs_rep2 6711566430498669492->-9189992207970627641 -9189992207970627641->-4505961815284023253 5113289745997130358 Overlap Peak optimal -4505961815284023253->5113289745997130358 -2894968526042645806 Overlap reproducibility -4505961815284023253->-2894968526042645806 8216451083201164802 IDR Peak optimal 1176146309227288294->8216451083201164802 -7939840611988446147 IDR reproducibility 1176146309227288294->-7939840611988446147 -4875543916362192822 Overlap Peak ppr 7274727265736754254->-4875543916362192822 -4875543916362192822->-4505961815284023253 -4644495105397762927 JSD Plot -9025450810875854173->-4644495105397762927

UCSC browser tracks

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