File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF185UEB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF185UEB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185UEB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185UEB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF185UEB.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF695DZB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF695DZB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF695DZB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF695DZB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF695DZB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.646M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.646M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.646M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185UEB.crop_101-2bp.nodup.pr1_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185UEB.crop_101-2bp.nodup.pr1_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185UEB.crop_101-2bp.nodup.pr1_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185UEB.crop_101-2bp.nodup.pr1_x_ctl.pooled.289M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185UEB.crop_101-2bp.nodup.pr2_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185UEB.crop_101-2bp.nodup.pr2_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185UEB.crop_101-2bp.nodup.pr2_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185UEB.crop_101-2bp.nodup.pr2_x_ctl.pooled.289M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF695DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF695DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF695DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF695DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.356M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF695DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF695DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF695DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF695DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.356M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.646M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185UEB.crop_101-2bp.nodup.pr1_x_ctl.pooled.289M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185UEB.crop_101-2bp.nodup.pr2_x_ctl.pooled.289M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF185UEB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF185UEB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF185UEB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF185UEB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185UEB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185UEB.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF695DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.356M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF695DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.356M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF695DZB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF695DZB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF695DZB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF695DZB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF695DZB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF695DZB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF185UEB.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0303543f-3569-418d-b146-37fbe0953e8f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.646M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.646M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF695DZB.crop_101-2bp.nodup_x_ctl.pooled.356M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -6755571033002745970 chip.macs2_signal_track_pooled 8592916763638687583 BW FC -6755571033002745970->8592916763638687583 -1260063690704050227 BW p-val -6755571033002745970->-1260063690704050227 110960438668588727 chip.call_peak_pooled -3887441692068374260 Peak (bfilt) 110960438668588727->-3887441692068374260 -7952279997266522425 Peak 110960438668588727->-7952279997266522425 -550716961063955534 chip.idr_ppr -7952279997266522425->-550716961063955534 -819551621532607952 chip.idr -7952279997266522425->-819551621532607952 -542804493349375543 chip.overlap -7952279997266522425->-542804493349375543 -6855187561275280636 chip.overlap_ppr -7952279997266522425->-6855187561275280636 1021880529498646469 chip.pool_ta 5265785420937473376 TAG-ALIGN 1021880529498646469->5265785420937473376 5265785420937473376->-6755571033002745970 5265785420937473376->110960438668588727 5265785420937473376->-550716961063955534 5265785420937473376->-819551621532607952 5265785420937473376->-542804493349375543 5265785420937473376->-6855187561275280636 -5163317375243845582 chip.call_peak -9154123638826306673 Peak (bfilt) -5163317375243845582->-9154123638826306673 1994733369843059812 Peak -5163317375243845582->1994733369843059812 1994733369843059812->-819551621532607952 1994733369843059812->-542804493349375543 -3856571118846207033 chip.reproducibility_overlap 1994733369843059812->-3856571118846207033 5209462419114341622 chip.reproducibility_idr 1994733369843059812->5209462419114341622 -423044810237349031 chip.bam2ta -5689759940252899200 TAG-ALIGN -423044810237349031->-5689759940252899200 -5689759940252899200->1021880529498646469 -5689759940252899200->-5163317375243845582 8029679228719154683 chip.macs2_signal_track -5689759940252899200->8029679228719154683 -5689759940252899200->-550716961063955534 -5689759940252899200->-3856571118846207033 -5689759940252899200->5209462419114341622 -5689759940252899200->-6855187561275280636 -3122693373192534308 chip.filter 1356304972241786820 SAMstats QC -3122693373192534308->1356304972241786820 -4016885645849917882 Filt/deduped BAM -3122693373192534308->-4016885645849917882 -9200706772050628991 LibCmplx QC -3122693373192534308->-9200706772050628991 -4016885645849917882->-423044810237349031 5530320740503495455 chip.jsd -4016885645849917882->5530320740503495455 -1214694646714056577 chip.align 4234084136425683119 SAMstats QC -1214694646714056577->4234084136425683119 -8832674908431609850 BAM -1214694646714056577->-8832674908431609850 -8832674908431609850->-3122693373192534308 4565850665881809152 chip.xcor -4512914412293001414 XCOR Plot 4565850665881809152->-4512914412293001414 -8169890036636277550 BW FC 8029679228719154683->-8169890036636277550 5627699706813181708 BW p-val 8029679228719154683->5627699706813181708 -6017310114178151907 FASTQ R1 (1) -6017310114178151907->-1214694646714056577 -6017310114178151907->4565850665881809152 783846947534167060 FASTQ R2 (1) 783846947534167060->-1214694646714056577 6227173297258662084 chip.call_peak -1158163589134085876 Peak (bfilt) 6227173297258662084->-1158163589134085876 3517898688673372839 Peak 6227173297258662084->3517898688673372839 3517898688673372839->-819551621532607952 3517898688673372839->-542804493349375543 3517898688673372839->-3856571118846207033 3517898688673372839->5209462419114341622 -2529243496319631341 chip.bam2ta -4380689559930526062 TAG-ALIGN -2529243496319631341->-4380689559930526062 -4380689559930526062->1021880529498646469 -4380689559930526062->6227173297258662084 6890439681420727558 chip.macs2_signal_track -4380689559930526062->6890439681420727558 -4380689559930526062->-550716961063955534 -4380689559930526062->-3856571118846207033 -4380689559930526062->5209462419114341622 -4380689559930526062->-6855187561275280636 2465805069933832909 chip.filter 4001697567108591907 SAMstats QC 2465805069933832909->4001697567108591907 -801985313330668479 Filt/deduped BAM 2465805069933832909->-801985313330668479 556462346162439939 LibCmplx QC 2465805069933832909->556462346162439939 -801985313330668479->-2529243496319631341 -801985313330668479->5530320740503495455 4154552251596341454 chip.align -1258213679524222850 SAMstats QC 4154552251596341454->-1258213679524222850 7844488094599600592 BAM 4154552251596341454->7844488094599600592 7844488094599600592->2465805069933832909 -4430293156665816982 chip.xcor 9077823969586111439 XCOR Plot -4430293156665816982->9077823969586111439 -6767757936164453403 BW FC 6890439681420727558->-6767757936164453403 -1511470385601185823 BW p-val 6890439681420727558->-1511470385601185823 5807188596178463014 FASTQ R1 (1) 5807188596178463014->4154552251596341454 5807188596178463014->-4430293156665816982 -8372007106588517610 FASTQ R2 (1) -8372007106588517610->4154552251596341454 -8113028263688211043 chip.pool_ta_ctl 4566119284562216261 TAG-ALIGN -8113028263688211043->4566119284562216261 4566119284562216261->-6755571033002745970 4566119284562216261->110960438668588727 4566119284562216261->-5163317375243845582 4566119284562216261->8029679228719154683 4566119284562216261->6227173297258662084 4566119284562216261->6890439681420727558 4566119284562216261->-550716961063955534 4566119284562216261->-3856571118846207033 4566119284562216261->5209462419114341622 4566119284562216261->-6855187561275280636 -8849450534827307465 chip.bam2ta_ctl -3936276235443932428 TAG-ALIGN -8849450534827307465->-3936276235443932428 -3936276235443932428->-8113028263688211043 -7646393830490405254 Filt/deduped BAM -7646393830490405254->-8849450534827307465 -7646393830490405254->5530320740503495455 -3886087882215540043 chip.bam2ta_ctl 8480379452522147621 TAG-ALIGN -3886087882215540043->8480379452522147621 8480379452522147621->-8113028263688211043 -7578181623416981364 Filt/deduped BAM -7578181623416981364->-3886087882215540043 -7578181623416981364->5530320740503495455 -5233199484197102762 chip.bam2ta_ctl -8948272097970793323 TAG-ALIGN -5233199484197102762->-8948272097970793323 -8948272097970793323->-8113028263688211043 2438846691342941002 Filt/deduped BAM 2438846691342941002->-5233199484197102762 2438846691342941002->5530320740503495455 770063760349249187 chip.bam2ta_ctl 7255673143688992510 TAG-ALIGN 770063760349249187->7255673143688992510 7255673143688992510->-8113028263688211043 -7841514439720709527 Filt/deduped BAM -7841514439720709527->770063760349249187 -7841514439720709527->5530320740503495455 6286511910948977702 chip.bam2ta_ctl -3460730333263750190 TAG-ALIGN 6286511910948977702->-3460730333263750190 -3460730333263750190->-8113028263688211043 -8700918155530848271 Filt/deduped BAM -8700918155530848271->6286511910948977702 -8700918155530848271->5530320740503495455 340759385858410855 chip.bam2ta_ctl -2589054181476931802 TAG-ALIGN 340759385858410855->-2589054181476931802 -2589054181476931802->-8113028263688211043 -9065874010785063665 Filt/deduped BAM -9065874010785063665->340759385858410855 -9065874010785063665->5530320740503495455 6309315875604958976 chip.bam2ta_ctl -2436272449699007563 TAG-ALIGN 6309315875604958976->-2436272449699007563 -2436272449699007563->-8113028263688211043 -5339844927756586496 Filt/deduped BAM -5339844927756586496->6309315875604958976 -5339844927756586496->5530320740503495455 -1203513696709078505 chip.bam2ta_ctl 8289068410799136030 TAG-ALIGN -1203513696709078505->8289068410799136030 8289068410799136030->-8113028263688211043 -520213137274182911 Filt/deduped BAM -520213137274182911->-1203513696709078505 -520213137274182911->5530320740503495455 1682256739511317892 chip.bam2ta_ctl 8302574999129634253 TAG-ALIGN 1682256739511317892->8302574999129634253 8302574999129634253->-8113028263688211043 -8014163557222466342 Filt/deduped BAM -8014163557222466342->1682256739511317892 -8014163557222466342->5530320740503495455 -8235415151979529542 chip.bam2ta_ctl -1193399375790968131 TAG-ALIGN -8235415151979529542->-1193399375790968131 -1193399375790968131->-8113028263688211043 -3340321986405933485 Filt/deduped BAM -3340321986405933485->-8235415151979529542 -3340321986405933485->5530320740503495455 -5589241505969390640 chip.bam2ta_ctl -8832884684762261842 TAG-ALIGN -5589241505969390640->-8832884684762261842 -8832884684762261842->-8113028263688211043 -3802180886518220931 Filt/deduped BAM -3802180886518220931->-5589241505969390640 -3802180886518220931->5530320740503495455 7382051550977272974 chip.bam2ta_ctl -5762961385054531493 TAG-ALIGN 7382051550977272974->-5762961385054531493 -5762961385054531493->-8113028263688211043 2829750942934410443 Filt/deduped BAM 2829750942934410443->7382051550977272974 2829750942934410443->5530320740503495455 5619762595530118994 chip.bam2ta_ctl -1162226085485060909 TAG-ALIGN 5619762595530118994->-1162226085485060909 -1162226085485060909->-8113028263688211043 -4183303654340680370 Filt/deduped BAM -4183303654340680370->5619762595530118994 -4183303654340680370->5530320740503495455 6697161084087770420 chip.bam2ta_ctl 5950689306241981695 TAG-ALIGN 6697161084087770420->5950689306241981695 5950689306241981695->-8113028263688211043 -7070379457628305469 Filt/deduped BAM -7070379457628305469->6697161084087770420 -7070379457628305469->5530320740503495455 -2799464033984533656 chip.bam2ta_ctl 1552134335188218219 TAG-ALIGN -2799464033984533656->1552134335188218219 1552134335188218219->-8113028263688211043 -1899754198589335946 Filt/deduped BAM -1899754198589335946->-2799464033984533656 -1899754198589335946->5530320740503495455 4542066324533188325 chip.bam2ta_ctl -6247153333737651759 TAG-ALIGN 4542066324533188325->-6247153333737651759 -6247153333737651759->-8113028263688211043 5719570095369968478 Filt/deduped BAM 5719570095369968478->4542066324533188325 5719570095369968478->5530320740503495455 1530852600373837410 chip.bam2ta_ctl 1037227740501703795 TAG-ALIGN 1530852600373837410->1037227740501703795 1037227740501703795->-8113028263688211043 -3558878596217144990 Filt/deduped BAM -3558878596217144990->1530852600373837410 -3558878596217144990->5530320740503495455 2697654707958751290 chip.bam2ta_ctl 1341104223499148764 TAG-ALIGN 2697654707958751290->1341104223499148764 1341104223499148764->-8113028263688211043 8342729772999430832 Filt/deduped BAM 8342729772999430832->2697654707958751290 8342729772999430832->5530320740503495455 -4355212214140440282 chip.bam2ta_ctl -5187833905825426961 TAG-ALIGN -4355212214140440282->-5187833905825426961 -5187833905825426961->-8113028263688211043 5053695625865322552 Filt/deduped BAM 5053695625865322552->-4355212214140440282 5053695625865322552->5530320740503495455 1357416088298441804 chip.bam2ta_ctl -2359244938179167829 TAG-ALIGN 1357416088298441804->-2359244938179167829 -2359244938179167829->-8113028263688211043 2318410471846501333 Filt/deduped BAM 2318410471846501333->1357416088298441804 2318410471846501333->5530320740503495455 2597213065737361454 chip.bam2ta_ctl -8159844025042488357 TAG-ALIGN 2597213065737361454->-8159844025042488357 -8159844025042488357->-8113028263688211043 -4780166771257221494 Filt/deduped BAM -4780166771257221494->2597213065737361454 -4780166771257221494->5530320740503495455 -31241465067281187 chip.bam2ta_ctl 2329316375906459112 TAG-ALIGN -31241465067281187->2329316375906459112 2329316375906459112->-8113028263688211043 9221631491638562199 Filt/deduped BAM 9221631491638562199->-31241465067281187 9221631491638562199->5530320740503495455 6330500576526201714 chip.bam2ta_ctl 6502939495754460065 TAG-ALIGN 6330500576526201714->6502939495754460065 6502939495754460065->-8113028263688211043 2878252882966931230 Filt/deduped BAM 2878252882966931230->6330500576526201714 2878252882966931230->5530320740503495455 3838026483950400638 chip.bam2ta_ctl -2527327794770955152 TAG-ALIGN 3838026483950400638->-2527327794770955152 -2527327794770955152->-8113028263688211043 3587534385461254430 Filt/deduped BAM 3587534385461254430->3838026483950400638 3587534385461254430->5530320740503495455 -8679191245351532553 IDR Plot ppr -550716961063955534->-8679191245351532553 3466659153389621923 IDR Peak ppr -550716961063955534->3466659153389621923 3466659153389621923->5209462419114341622 6173842730706563199 IDR Plot rep1_vs_rep2 -819551621532607952->6173842730706563199 3630202292886278270 IDR NPeak rep1_vs_rep2 -819551621532607952->3630202292886278270 3630202292886278270->5209462419114341622 -2067709949963411609 Overlap Peak rep1_vs_rep2 -542804493349375543->-2067709949963411609 -2067709949963411609->-3856571118846207033 -7760107918662890690 Overlap Peak optimal -3856571118846207033->-7760107918662890690 -1318627911431379562 Overlap reproducibility -3856571118846207033->-1318627911431379562 4620821428338749852 IDR Peak optimal 5209462419114341622->4620821428338749852 5479360038526769803 IDR reproducibility 5209462419114341622->5479360038526769803 5081906273639857505 Overlap Peak ppr -6855187561275280636->5081906273639857505 5081906273639857505->-3856571118846207033 -3299248508110256311 JSD Plot 5530320740503495455->-3299248508110256311

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UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF185UEB.crop_101-2bp.nodup_x_ctl.pooled.289M.fc.signal.bigwig?Expires=1601330291&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=xFqStbV45l1uupbve6VQXTwW06%2Bbu7wZnrnV64GgWPr5voT3EBXC4NWmmKpx2L2CpZoEuhuv1lpwGuo4fD%2BbxUX2wpSR4FVk2aqqywiDyAUrAIq1XkYDM0s6Be4M9m3K7CTA4o71pcnw%2B6jYolnDQF33TON1A3fdc6%2FvHrlWYBxy3HnmrUs9baBVh13z%2FeFZ6WAq8DzEHP4AD49NJ7TirQVnEiFAALaSpJ4qZkLHMcl%2F1vVbi26AsDk3lmL4E5cO1V64q%2FsvwC5RP%2Fq48KD9uSJCXN%2BaOF%2FnW4Y58E6A6v8nql%2BbNntWHUKUPT3H4CzzGJ62M31KZM%2BCeJfOtcr%2BBA%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/97b75c1c-ac48-417f-8457-8d2b942c4ec2/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.646M.pval.signal.bigwig?Expires=1601330292&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=3mcsGoQ9232rpiGK%2BcqHjjv%2FscVDWHcwVc%2Bu8bWded6ixzK2G%2Bj3yEg2zIsCCwE0oVCACiKT14Kkg2qd3QXagiSIVG8saCi2%2F18%2FqxhWDsbca0yYfaVutYU%2Bi%2FrZr3%2FxnEqF5xawSz8p0qFSV%2BdXxyfE10pI%2FLGd6qKsPe0cw3jHdNcjW8qpgQWKoeDMi%2FgUW4%2FV%2F5aDBtzbtSI%2BtEOHU%2Bv8Rmen1wXx0oFgA%2FFuUrfHtUI0fsmZaFKg3DqvZ%2BOtP%2FI%2BEU86u0GtopvgJSdmyJG5MQnPfnQ43qeOURCq3WnqI9r9PNarOY%2Fhj1DIsiGGj4e2tct%2FaLc1ALiIsKurcw%3D%3D"
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