File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF569UHH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF569UHH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF569UHH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF569UHH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF569UHH.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF951MCE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF951MCE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF951MCE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF951MCE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF951MCE.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.540M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.540M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.540M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.540M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF569UHH.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF569UHH.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF569UHH.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF569UHH.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF569UHH.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF569UHH.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF569UHH.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF569UHH.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF951MCE.crop_101-2bp.nodup.pr1_x_ctl.pooled.277M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF951MCE.crop_101-2bp.nodup.pr1_x_ctl.pooled.277M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF951MCE.crop_101-2bp.nodup.pr1_x_ctl.pooled.277M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF951MCE.crop_101-2bp.nodup.pr1_x_ctl.pooled.277M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF951MCE.crop_101-2bp.nodup.pr2_x_ctl.pooled.277M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF951MCE.crop_101-2bp.nodup.pr2_x_ctl.pooled.277M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF951MCE.crop_101-2bp.nodup.pr2_x_ctl.pooled.277M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF951MCE.crop_101-2bp.nodup.pr2_x_ctl.pooled.277M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.540M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.540M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.540M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569UHH.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569UHH.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF569UHH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF569UHH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF569UHH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF569UHH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF569UHH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF569UHH.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF951MCE.crop_101-2bp.nodup.pr1_x_ctl.pooled.277M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF951MCE.crop_101-2bp.nodup.pr2_x_ctl.pooled.277M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF951MCE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF951MCE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF951MCE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF951MCE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF951MCE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1c7e6ecd-717b-41d2-867b-5cc79aa2e77f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF951MCE.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF569UHH.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.540M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.540M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF569UHH.crop_101-2bp.nodup_x_ctl.pooled.262M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0981e568-2b80-45e5-8bb7-cab421a560e9/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF951MCE.crop_101-2bp.nodup_x_ctl.pooled.277M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5295083879708364698 chip.macs2_signal_track_pooled 3180903090935778377 BW FC 5295083879708364698->3180903090935778377 -5616924528222370086 BW p-val 5295083879708364698->-5616924528222370086 8965911270201610110 chip.call_peak_pooled -2156114161492546922 Peak (bfilt) 8965911270201610110->-2156114161492546922 -4924876849924413659 Peak 8965911270201610110->-4924876849924413659 -4105190025390693756 chip.idr_ppr -4924876849924413659->-4105190025390693756 -4495820883310339304 chip.idr -4924876849924413659->-4495820883310339304 -2363944154637500214 chip.overlap -4924876849924413659->-2363944154637500214 -8458304418637198354 chip.overlap_ppr -4924876849924413659->-8458304418637198354 8210840015865896175 chip.pool_ta -1351715638562315284 TAG-ALIGN 8210840015865896175->-1351715638562315284 -1351715638562315284->5295083879708364698 -1351715638562315284->8965911270201610110 -1351715638562315284->-4105190025390693756 -1351715638562315284->-4495820883310339304 -1351715638562315284->-2363944154637500214 -1351715638562315284->-8458304418637198354 7777217146939561069 chip.call_peak 6851577463720151378 Peak (bfilt) 7777217146939561069->6851577463720151378 -2736842275286989565 Peak 7777217146939561069->-2736842275286989565 -2736842275286989565->-4495820883310339304 -2736842275286989565->-2363944154637500214 -4373878753227296180 chip.reproducibility_overlap -2736842275286989565->-4373878753227296180 -3424521681807967785 chip.reproducibility_idr -2736842275286989565->-3424521681807967785 6062926201437056437 chip.bam2ta 3292727855194950094 TAG-ALIGN 6062926201437056437->3292727855194950094 3292727855194950094->8210840015865896175 3292727855194950094->7777217146939561069 -2689418751511060675 chip.macs2_signal_track 3292727855194950094->-2689418751511060675 3292727855194950094->-4105190025390693756 3292727855194950094->-4373878753227296180 3292727855194950094->-3424521681807967785 3292727855194950094->-8458304418637198354 5346386950968680024 chip.filter -390720237049112314 SAMstats QC 5346386950968680024->-390720237049112314 -3033041901643479122 Filt/deduped BAM 5346386950968680024->-3033041901643479122 5110956334898917280 LibCmplx QC 5346386950968680024->5110956334898917280 -3033041901643479122->6062926201437056437 -3697581764155501756 chip.jsd -3033041901643479122->-3697581764155501756 -4023790727055424277 chip.jsd -3033041901643479122->-4023790727055424277 6440724980766624835 chip.align -505832428478312237 SAMstats QC 6440724980766624835->-505832428478312237 -289386878913317627 BAM 6440724980766624835->-289386878913317627 -289386878913317627->5346386950968680024 236175794603600006 chip.xcor -2823036171071172027 XCOR Plot 236175794603600006->-2823036171071172027 -3898796991060893781 BW FC -2689418751511060675->-3898796991060893781 -7564867558936712589 BW p-val -2689418751511060675->-7564867558936712589 -4234794100581596199 FASTQ R1 (1) -4234794100581596199->6440724980766624835 -4234794100581596199->236175794603600006 -3256493282487241787 FASTQ R2 (1) -3256493282487241787->6440724980766624835 7033328910912731763 chip.call_peak -7541693377712509833 Peak (bfilt) 7033328910912731763->-7541693377712509833 -7383419159872174098 Peak 7033328910912731763->-7383419159872174098 -7383419159872174098->-4495820883310339304 -7383419159872174098->-2363944154637500214 -7383419159872174098->-4373878753227296180 -7383419159872174098->-3424521681807967785 -4459122634560264235 chip.bam2ta 2050667756725741670 TAG-ALIGN -4459122634560264235->2050667756725741670 2050667756725741670->8210840015865896175 2050667756725741670->7033328910912731763 3719292890633320101 chip.macs2_signal_track 2050667756725741670->3719292890633320101 2050667756725741670->-4105190025390693756 2050667756725741670->-4373878753227296180 2050667756725741670->-3424521681807967785 2050667756725741670->-8458304418637198354 -1919840688655659355 chip.filter -6201019189331663849 SAMstats QC -1919840688655659355->-6201019189331663849 5628331300584358613 Filt/deduped BAM -1919840688655659355->5628331300584358613 -6287558493117651186 LibCmplx QC -1919840688655659355->-6287558493117651186 5628331300584358613->-4459122634560264235 5628331300584358613->-3697581764155501756 5628331300584358613->-4023790727055424277 -3215904072519582653 chip.align 534571337145534825 SAMstats QC -3215904072519582653->534571337145534825 8973450980582886903 BAM -3215904072519582653->8973450980582886903 8973450980582886903->-1919840688655659355 -5170752036120863564 chip.xcor 511588559750969986 XCOR Plot -5170752036120863564->511588559750969986 9082494936405082170 BW FC 3719292890633320101->9082494936405082170 -1990971083515463658 BW p-val 3719292890633320101->-1990971083515463658 6591509354858830029 FASTQ R1 (1) 6591509354858830029->-3215904072519582653 6591509354858830029->-5170752036120863564 4145754125798675184 FASTQ R2 (1) 4145754125798675184->-3215904072519582653 7241302039480026130 chip.pool_ta_ctl -3260114738218958255 TAG-ALIGN 7241302039480026130->-3260114738218958255 -3260114738218958255->5295083879708364698 -3260114738218958255->8965911270201610110 -3260114738218958255->7777217146939561069 -3260114738218958255->-2689418751511060675 -3260114738218958255->7033328910912731763 -3260114738218958255->3719292890633320101 -3260114738218958255->-4105190025390693756 -3260114738218958255->-4373878753227296180 -3260114738218958255->-3424521681807967785 -3260114738218958255->-8458304418637198354 8536286220685348606 chip.bam2ta_ctl 1566859112838649110 TAG-ALIGN 8536286220685348606->1566859112838649110 1566859112838649110->7241302039480026130 645721609310604312 Filt/deduped BAM 645721609310604312->8536286220685348606 645721609310604312->-3697581764155501756 645721609310604312->-4023790727055424277 8208764390943103529 chip.bam2ta_ctl 9096689042021023081 TAG-ALIGN 8208764390943103529->9096689042021023081 9096689042021023081->7241302039480026130 -2166761112671270891 Filt/deduped BAM -2166761112671270891->8208764390943103529 -2166761112671270891->-3697581764155501756 -2166761112671270891->-4023790727055424277 -4788481854938037384 chip.bam2ta_ctl -5764037587509683166 TAG-ALIGN -4788481854938037384->-5764037587509683166 -5764037587509683166->7241302039480026130 2681985471439956172 Filt/deduped BAM 2681985471439956172->-4788481854938037384 2681985471439956172->-3697581764155501756 2681985471439956172->-4023790727055424277 -7301868508571020000 chip.bam2ta_ctl 186312696271143137 TAG-ALIGN -7301868508571020000->186312696271143137 186312696271143137->7241302039480026130 -3174665043023484770 Filt/deduped BAM -3174665043023484770->-7301868508571020000 -3174665043023484770->-3697581764155501756 -3174665043023484770->-4023790727055424277 -3778130900849970775 chip.bam2ta_ctl -6462038803435759163 TAG-ALIGN -3778130900849970775->-6462038803435759163 -6462038803435759163->7241302039480026130 -7576025556113549594 Filt/deduped BAM -7576025556113549594->-3778130900849970775 -7576025556113549594->-3697581764155501756 -7576025556113549594->-4023790727055424277 173041372315997097 chip.bam2ta_ctl -160356677151592315 TAG-ALIGN 173041372315997097->-160356677151592315 -160356677151592315->7241302039480026130 -8603619113859237683 Filt/deduped BAM -8603619113859237683->173041372315997097 -8603619113859237683->-3697581764155501756 -8603619113859237683->-4023790727055424277 -6068371617471134494 chip.bam2ta_ctl -6966325822208402648 TAG-ALIGN -6068371617471134494->-6966325822208402648 -6966325822208402648->7241302039480026130 7760960874611667240 Filt/deduped BAM 7760960874611667240->-6068371617471134494 7760960874611667240->-3697581764155501756 7760960874611667240->-4023790727055424277 6708478320663183481 chip.bam2ta_ctl 6164942408057022148 TAG-ALIGN 6708478320663183481->6164942408057022148 6164942408057022148->7241302039480026130 -7300862695862007172 Filt/deduped BAM -7300862695862007172->6708478320663183481 -7300862695862007172->-3697581764155501756 -7300862695862007172->-4023790727055424277 102571564184101613 chip.bam2ta_ctl 5265244371530479880 TAG-ALIGN 102571564184101613->5265244371530479880 5265244371530479880->7241302039480026130 1610085102336773665 Filt/deduped BAM 1610085102336773665->102571564184101613 1610085102336773665->-3697581764155501756 1610085102336773665->-4023790727055424277 7674316040928642654 chip.bam2ta_ctl 6324862254633878418 TAG-ALIGN 7674316040928642654->6324862254633878418 6324862254633878418->7241302039480026130 3418230314210435007 Filt/deduped BAM 3418230314210435007->7674316040928642654 3418230314210435007->-3697581764155501756 3418230314210435007->-4023790727055424277 -3251011121184899608 chip.bam2ta_ctl -653778384231618920 TAG-ALIGN -3251011121184899608->-653778384231618920 -653778384231618920->7241302039480026130 -2975258541634144626 Filt/deduped BAM -2975258541634144626->-3251011121184899608 -2975258541634144626->-3697581764155501756 -2975258541634144626->-4023790727055424277 1924042534926133848 chip.bam2ta_ctl 6289089644105243615 TAG-ALIGN 1924042534926133848->6289089644105243615 6289089644105243615->7241302039480026130 2954542426200143376 Filt/deduped BAM 2954542426200143376->1924042534926133848 2954542426200143376->-3697581764155501756 2954542426200143376->-4023790727055424277 270723999437765803 chip.bam2ta_ctl 7712829417746962112 TAG-ALIGN 270723999437765803->7712829417746962112 7712829417746962112->7241302039480026130 -1362627552957087205 Filt/deduped BAM -1362627552957087205->270723999437765803 -1362627552957087205->-3697581764155501756 -1362627552957087205->-4023790727055424277 6641942271860160401 chip.bam2ta_ctl -8356208828213368161 TAG-ALIGN 6641942271860160401->-8356208828213368161 -8356208828213368161->7241302039480026130 -5234033573948390861 Filt/deduped BAM -5234033573948390861->6641942271860160401 -5234033573948390861->-3697581764155501756 -5234033573948390861->-4023790727055424277 -8489887565923956866 chip.bam2ta_ctl 8886791814496894905 TAG-ALIGN -8489887565923956866->8886791814496894905 8886791814496894905->7241302039480026130 5239971426638654651 Filt/deduped BAM 5239971426638654651->-8489887565923956866 5239971426638654651->-3697581764155501756 5239971426638654651->-4023790727055424277 -6825674016894510782 chip.bam2ta_ctl 2402681145016063893 TAG-ALIGN -6825674016894510782->2402681145016063893 2402681145016063893->7241302039480026130 -4711685841788368356 Filt/deduped BAM -4711685841788368356->-6825674016894510782 -4711685841788368356->-3697581764155501756 -4711685841788368356->-4023790727055424277 180309253389547562 chip.bam2ta_ctl 7156517316580273871 TAG-ALIGN 180309253389547562->7156517316580273871 7156517316580273871->7241302039480026130 4981122593571410179 Filt/deduped BAM 4981122593571410179->180309253389547562 4981122593571410179->-3697581764155501756 4981122593571410179->-4023790727055424277 -5557188622376317048 chip.bam2ta_ctl -8100673109234339006 TAG-ALIGN -5557188622376317048->-8100673109234339006 -8100673109234339006->7241302039480026130 7882407711524827117 Filt/deduped BAM 7882407711524827117->-5557188622376317048 7882407711524827117->-3697581764155501756 7882407711524827117->-4023790727055424277 6982629346791790846 chip.bam2ta_ctl 109147503059697790 TAG-ALIGN 6982629346791790846->109147503059697790 109147503059697790->7241302039480026130 -4249571736933713018 Filt/deduped BAM -4249571736933713018->6982629346791790846 -4249571736933713018->-3697581764155501756 -4249571736933713018->-4023790727055424277 3600484879605036900 chip.bam2ta_ctl 7746350245632503848 TAG-ALIGN 3600484879605036900->7746350245632503848 7746350245632503848->7241302039480026130 -3208780767559984219 Filt/deduped BAM -3208780767559984219->3600484879605036900 -3208780767559984219->-3697581764155501756 -3208780767559984219->-4023790727055424277 -7984014178324912355 chip.bam2ta_ctl -8216366066924417040 TAG-ALIGN -7984014178324912355->-8216366066924417040 -8216366066924417040->7241302039480026130 6650687273792941797 Filt/deduped BAM 6650687273792941797->-7984014178324912355 6650687273792941797->-3697581764155501756 6650687273792941797->-4023790727055424277 6534376315157991694 chip.bam2ta_ctl -4646950320114717868 TAG-ALIGN 6534376315157991694->-4646950320114717868 -4646950320114717868->7241302039480026130 3064458676124658753 Filt/deduped BAM 3064458676124658753->6534376315157991694 3064458676124658753->-3697581764155501756 3064458676124658753->-4023790727055424277 -8047824773645055115 chip.bam2ta_ctl -5891876541302510667 TAG-ALIGN -8047824773645055115->-5891876541302510667 -5891876541302510667->7241302039480026130 7901303582608883540 Filt/deduped BAM 7901303582608883540->-8047824773645055115 7901303582608883540->-3697581764155501756 7901303582608883540->-4023790727055424277 -7962981935762028703 chip.bam2ta_ctl -2094173339746568186 TAG-ALIGN -7962981935762028703->-2094173339746568186 -2094173339746568186->7241302039480026130 -6645390753411752810 Filt/deduped BAM -6645390753411752810->-7962981935762028703 -6645390753411752810->-3697581764155501756 -6645390753411752810->-4023790727055424277 -4777948473403795648 IDR Plot ppr -4105190025390693756->-4777948473403795648 7330392852059471012 IDR Peak ppr -4105190025390693756->7330392852059471012 7330392852059471012->-3424521681807967785 -7496485519696094611 IDR Plot rep1_vs_rep2 -4495820883310339304->-7496485519696094611 -1133292347540034846 IDR NPeak rep1_vs_rep2 -4495820883310339304->-1133292347540034846 -1133292347540034846->-3424521681807967785 -5318628916101036908 Overlap Peak rep1_vs_rep2 -2363944154637500214->-5318628916101036908 -5318628916101036908->-4373878753227296180 3113543521432052149 Overlap Peak optimal -4373878753227296180->3113543521432052149 7847759616685630625 Overlap reproducibility -4373878753227296180->7847759616685630625 -7399888654275334690 IDR Peak optimal -3424521681807967785->-7399888654275334690 253376127001202850 IDR reproducibility -3424521681807967785->253376127001202850 6518288896433276297 Overlap Peak ppr -8458304418637198354->6518288896433276297 6518288896433276297->-4373878753227296180 1413193483440724046 JSD Plot -3697581764155501756->1413193483440724046 -4023790727055424277->1413193483440724046

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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