File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF548XKA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF548XKA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF548XKA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF548XKA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF548XKA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF307HHE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF307HHE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF307HHE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF307HHE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF307HHE.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.450M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.450M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.450M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF548XKA.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF548XKA.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF548XKA.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF548XKA.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF548XKA.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF548XKA.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF548XKA.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF548XKA.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF307HHE.crop_101-2bp.nodup.pr1_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF307HHE.crop_101-2bp.nodup.pr1_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF307HHE.crop_101-2bp.nodup.pr1_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF307HHE.crop_101-2bp.nodup.pr1_x_ctl.pooled.214M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF307HHE.crop_101-2bp.nodup.pr2_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF307HHE.crop_101-2bp.nodup.pr2_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF307HHE.crop_101-2bp.nodup.pr2_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF307HHE.crop_101-2bp.nodup.pr2_x_ctl.pooled.214M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.450M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF548XKA.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF548XKA.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF548XKA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF548XKA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF548XKA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF548XKA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF548XKA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF548XKA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF307HHE.crop_101-2bp.nodup.pr1_x_ctl.pooled.214M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF307HHE.crop_101-2bp.nodup.pr2_x_ctl.pooled.214M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF307HHE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF307HHE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF307HHE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF307HHE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF307HHE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF307HHE.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF548XKA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e4c5d106-1c52-4aeb-bc25-69a6a97032fa/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.450M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.450M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF548XKA.crop_101-2bp.nodup_x_ctl.pooled.235M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/200b0aeb-25c8-49e6-96e7-e9265b3902b9/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF307HHE.crop_101-2bp.nodup_x_ctl.pooled.214M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -7959696615990238555 chip.macs2_signal_track_pooled 4543070229921801839 BW FC -7959696615990238555->4543070229921801839 -4782531393375702241 BW p-val -7959696615990238555->-4782531393375702241 -7430870159055462487 chip.call_peak_pooled 5250123794866890675 Peak (bfilt) -7430870159055462487->5250123794866890675 -680254397117577400 Peak -7430870159055462487->-680254397117577400 2712382144792038808 chip.idr_ppr -680254397117577400->2712382144792038808 7073426875985539143 chip.idr -680254397117577400->7073426875985539143 1458097854857065972 chip.overlap -680254397117577400->1458097854857065972 -4592759368869187138 chip.overlap_ppr -680254397117577400->-4592759368869187138 2254961236208245553 chip.pool_ta -5936947611413436916 TAG-ALIGN 2254961236208245553->-5936947611413436916 -5936947611413436916->-7959696615990238555 -5936947611413436916->-7430870159055462487 -5936947611413436916->2712382144792038808 -5936947611413436916->7073426875985539143 -5936947611413436916->1458097854857065972 -5936947611413436916->-4592759368869187138 -5170584781886561564 chip.call_peak -8175629697117073256 Peak (bfilt) -5170584781886561564->-8175629697117073256 -3409690426061604077 Peak -5170584781886561564->-3409690426061604077 -3409690426061604077->7073426875985539143 -3409690426061604077->1458097854857065972 -4746924247555074175 chip.reproducibility_overlap -3409690426061604077->-4746924247555074175 -8889760020685890483 chip.reproducibility_idr -3409690426061604077->-8889760020685890483 6777229469697712142 chip.bam2ta -5086668603655053459 TAG-ALIGN 6777229469697712142->-5086668603655053459 -5086668603655053459->2254961236208245553 -5086668603655053459->-5170584781886561564 3243730475625722366 chip.macs2_signal_track -5086668603655053459->3243730475625722366 -5086668603655053459->2712382144792038808 -5086668603655053459->-4746924247555074175 -5086668603655053459->-8889760020685890483 -5086668603655053459->-4592759368869187138 -4706000559523530983 chip.filter 664655756496249916 SAMstats QC -4706000559523530983->664655756496249916 4401807636233643989 Filt/deduped BAM -4706000559523530983->4401807636233643989 -3911984836764703783 LibCmplx QC -4706000559523530983->-3911984836764703783 4401807636233643989->6777229469697712142 4691986289834605243 chip.jsd 4401807636233643989->4691986289834605243 -4167035495365337152 chip.align 6323528198328019712 SAMstats QC -4167035495365337152->6323528198328019712 -3628203324955522859 BAM -4167035495365337152->-3628203324955522859 -3628203324955522859->-4706000559523530983 4284230271657240470 chip.xcor -6587516050548330246 XCOR Plot 4284230271657240470->-6587516050548330246 -1541272585525749682 BW FC 3243730475625722366->-1541272585525749682 -1105775041348286401 BW p-val 3243730475625722366->-1105775041348286401 -5339367085521438836 FASTQ R1 (1) -5339367085521438836->-4167035495365337152 -5339367085521438836->4284230271657240470 4740189168178350172 FASTQ R2 (1) 4740189168178350172->-4167035495365337152 -3604329266367159210 chip.call_peak 934307466774669164 Peak (bfilt) -3604329266367159210->934307466774669164 -6893969365342821672 Peak -3604329266367159210->-6893969365342821672 -6893969365342821672->7073426875985539143 -6893969365342821672->1458097854857065972 -6893969365342821672->-4746924247555074175 -6893969365342821672->-8889760020685890483 4071432965255040753 chip.bam2ta -3888278138912377124 TAG-ALIGN 4071432965255040753->-3888278138912377124 -3888278138912377124->2254961236208245553 -3888278138912377124->-3604329266367159210 -1201624228461008346 chip.macs2_signal_track -3888278138912377124->-1201624228461008346 -3888278138912377124->2712382144792038808 -3888278138912377124->-4746924247555074175 -3888278138912377124->-8889760020685890483 -3888278138912377124->-4592759368869187138 -119049312050021325 chip.filter -941410377813672006 SAMstats QC -119049312050021325->-941410377813672006 5727598396227824614 Filt/deduped BAM -119049312050021325->5727598396227824614 4317848405665161571 LibCmplx QC -119049312050021325->4317848405665161571 5727598396227824614->4071432965255040753 5727598396227824614->4691986289834605243 4102818478867890338 chip.align -5447150730043294275 SAMstats QC 4102818478867890338->-5447150730043294275 -7289439638576450378 BAM 4102818478867890338->-7289439638576450378 -7289439638576450378->-119049312050021325 -3247960139483929221 chip.xcor -3540189342870893213 XCOR Plot -3247960139483929221->-3540189342870893213 -7844365096920756031 BW FC -1201624228461008346->-7844365096920756031 1671089209621980679 BW p-val -1201624228461008346->1671089209621980679 -5657358419644473164 FASTQ R1 (1) -5657358419644473164->4102818478867890338 -5657358419644473164->-3247960139483929221 1025313488328963095 FASTQ R2 (1) 1025313488328963095->4102818478867890338 -1843712892984653290 chip.pool_ta_ctl 2295417578033177996 TAG-ALIGN -1843712892984653290->2295417578033177996 2295417578033177996->-7959696615990238555 2295417578033177996->-7430870159055462487 2295417578033177996->-5170584781886561564 2295417578033177996->3243730475625722366 2295417578033177996->-3604329266367159210 2295417578033177996->-1201624228461008346 2295417578033177996->2712382144792038808 2295417578033177996->-4746924247555074175 2295417578033177996->-8889760020685890483 2295417578033177996->-4592759368869187138 4280374898238763753 chip.bam2ta_ctl -3800240528071063801 TAG-ALIGN 4280374898238763753->-3800240528071063801 -3800240528071063801->-1843712892984653290 4597042080484936104 Filt/deduped BAM 4597042080484936104->4280374898238763753 4597042080484936104->4691986289834605243 -3489236466896581037 chip.bam2ta_ctl -5865305658268826199 TAG-ALIGN -3489236466896581037->-5865305658268826199 -5865305658268826199->-1843712892984653290 -6659794214786588137 Filt/deduped BAM -6659794214786588137->-3489236466896581037 -6659794214786588137->4691986289834605243 -7474293740720674178 chip.bam2ta_ctl -8303011571708725106 TAG-ALIGN -7474293740720674178->-8303011571708725106 -8303011571708725106->-1843712892984653290 -7083052113678790 Filt/deduped BAM -7083052113678790->-7474293740720674178 -7083052113678790->4691986289834605243 3091133805094104824 chip.bam2ta_ctl -6085740891192942284 TAG-ALIGN 3091133805094104824->-6085740891192942284 -6085740891192942284->-1843712892984653290 493278160715406521 Filt/deduped BAM 493278160715406521->3091133805094104824 493278160715406521->4691986289834605243 5966767897147321604 chip.bam2ta_ctl -8584135310987291392 TAG-ALIGN 5966767897147321604->-8584135310987291392 -8584135310987291392->-1843712892984653290 251326109012738212 Filt/deduped BAM 251326109012738212->5966767897147321604 251326109012738212->4691986289834605243 359674596673103773 chip.bam2ta_ctl 6963824770994539128 TAG-ALIGN 359674596673103773->6963824770994539128 6963824770994539128->-1843712892984653290 2504766106199553194 Filt/deduped BAM 2504766106199553194->359674596673103773 2504766106199553194->4691986289834605243 1369446130448179921 chip.bam2ta_ctl -6979810508529515801 TAG-ALIGN 1369446130448179921->-6979810508529515801 -6979810508529515801->-1843712892984653290 5140474744171369470 Filt/deduped BAM 5140474744171369470->1369446130448179921 5140474744171369470->4691986289834605243 -3183811803816627039 chip.bam2ta_ctl 4472835743696544740 TAG-ALIGN -3183811803816627039->4472835743696544740 4472835743696544740->-1843712892984653290 -2631235515924812168 Filt/deduped BAM -2631235515924812168->-3183811803816627039 -2631235515924812168->4691986289834605243 6509640352124944945 chip.bam2ta_ctl -220495252674214094 TAG-ALIGN 6509640352124944945->-220495252674214094 -220495252674214094->-1843712892984653290 7661159926454564075 Filt/deduped BAM 7661159926454564075->6509640352124944945 7661159926454564075->4691986289834605243 -106573966709437352 chip.bam2ta_ctl 6686394568890387839 TAG-ALIGN -106573966709437352->6686394568890387839 6686394568890387839->-1843712892984653290 -6200523837826827070 Filt/deduped BAM -6200523837826827070->-106573966709437352 -6200523837826827070->4691986289834605243 1714173376584613043 chip.bam2ta_ctl -4320217817365982553 TAG-ALIGN 1714173376584613043->-4320217817365982553 -4320217817365982553->-1843712892984653290 -8589992155959891764 Filt/deduped BAM -8589992155959891764->1714173376584613043 -8589992155959891764->4691986289834605243 5164154457051531158 chip.bam2ta_ctl 4783747697612026773 TAG-ALIGN 5164154457051531158->4783747697612026773 4783747697612026773->-1843712892984653290 -881780651106315064 Filt/deduped BAM -881780651106315064->5164154457051531158 -881780651106315064->4691986289834605243 -4497592255234777198 chip.bam2ta_ctl -1959069355441934220 TAG-ALIGN -4497592255234777198->-1959069355441934220 -1959069355441934220->-1843712892984653290 -3975499357553875922 Filt/deduped BAM -3975499357553875922->-4497592255234777198 -3975499357553875922->4691986289834605243 7957723896216720783 chip.bam2ta_ctl 5629690143228592063 TAG-ALIGN 7957723896216720783->5629690143228592063 5629690143228592063->-1843712892984653290 -2736445291560477871 Filt/deduped BAM -2736445291560477871->7957723896216720783 -2736445291560477871->4691986289834605243 2622019236516968800 chip.bam2ta_ctl 8785059423120403873 TAG-ALIGN 2622019236516968800->8785059423120403873 8785059423120403873->-1843712892984653290 -89327418860080671 Filt/deduped BAM -89327418860080671->2622019236516968800 -89327418860080671->4691986289834605243 -1467031286616360216 chip.bam2ta_ctl -8781426743983853709 TAG-ALIGN -1467031286616360216->-8781426743983853709 -8781426743983853709->-1843712892984653290 -1555351619680896192 Filt/deduped BAM -1555351619680896192->-1467031286616360216 -1555351619680896192->4691986289834605243 -5103001721533208811 chip.bam2ta_ctl -4190736060741502737 TAG-ALIGN -5103001721533208811->-4190736060741502737 -4190736060741502737->-1843712892984653290 4132406729997467748 Filt/deduped BAM 4132406729997467748->-5103001721533208811 4132406729997467748->4691986289834605243 -9032463996566211240 chip.bam2ta_ctl -8133388186572627394 TAG-ALIGN -9032463996566211240->-8133388186572627394 -8133388186572627394->-1843712892984653290 6801073760847840949 Filt/deduped BAM 6801073760847840949->-9032463996566211240 6801073760847840949->4691986289834605243 5986031995863867613 chip.bam2ta_ctl -234669366648486661 TAG-ALIGN 5986031995863867613->-234669366648486661 -234669366648486661->-1843712892984653290 -6132309178663442030 Filt/deduped BAM -6132309178663442030->5986031995863867613 -6132309178663442030->4691986289834605243 7307433948423826451 chip.bam2ta_ctl -3176176399322735745 TAG-ALIGN 7307433948423826451->-3176176399322735745 -3176176399322735745->-1843712892984653290 -4615821404724197433 Filt/deduped BAM -4615821404724197433->7307433948423826451 -4615821404724197433->4691986289834605243 1391780466182503701 chip.bam2ta_ctl 8176875492782893037 TAG-ALIGN 1391780466182503701->8176875492782893037 8176875492782893037->-1843712892984653290 324830415450848934 Filt/deduped BAM 324830415450848934->1391780466182503701 324830415450848934->4691986289834605243 7433652771801450977 chip.bam2ta_ctl -8857160260632583220 TAG-ALIGN 7433652771801450977->-8857160260632583220 -8857160260632583220->-1843712892984653290 -3906868304764421462 Filt/deduped BAM -3906868304764421462->7433652771801450977 -3906868304764421462->4691986289834605243 -6325780499283916534 chip.bam2ta_ctl -633526325941752355 TAG-ALIGN -6325780499283916534->-633526325941752355 -633526325941752355->-1843712892984653290 6128008989491251955 Filt/deduped BAM 6128008989491251955->-6325780499283916534 6128008989491251955->4691986289834605243 180977475888322613 chip.bam2ta_ctl 8704677827075217662 TAG-ALIGN 180977475888322613->8704677827075217662 8704677827075217662->-1843712892984653290 -8094776615616230278 Filt/deduped BAM -8094776615616230278->180977475888322613 -8094776615616230278->4691986289834605243 -2717849724931225707 IDR Plot ppr 2712382144792038808->-2717849724931225707 -1119466384074936398 IDR Peak ppr 2712382144792038808->-1119466384074936398 -1119466384074936398->-8889760020685890483 -6468167654326952309 IDR Plot rep1_vs_rep2 7073426875985539143->-6468167654326952309 2723930544893857052 IDR NPeak rep1_vs_rep2 7073426875985539143->2723930544893857052 2723930544893857052->-8889760020685890483 -1623446960886326314 Overlap Peak rep1_vs_rep2 1458097854857065972->-1623446960886326314 -1623446960886326314->-4746924247555074175 1632717290347624699 Overlap Peak optimal -4746924247555074175->1632717290347624699 7776406496365089573 Overlap reproducibility -4746924247555074175->7776406496365089573 -8691120557152908108 IDR Peak optimal -8889760020685890483->-8691120557152908108 2093452234475774916 IDR reproducibility -8889760020685890483->2093452234475774916 3335845525907964253 Overlap Peak ppr -4592759368869187138->3335845525907964253 3335845525907964253->-4746924247555074175 -3804451940305333131 JSD Plot 4691986289834605243->-3804451940305333131

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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