File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF906LEJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF906LEJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF906LEJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF906LEJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF906LEJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF592FUT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF592FUT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF592FUT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF592FUT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF592FUT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.455M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.455M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.455M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF906LEJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF906LEJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF906LEJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF906LEJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF906LEJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF906LEJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF906LEJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF906LEJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF592FUT.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF592FUT.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF592FUT.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF592FUT.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF592FUT.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF592FUT.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF592FUT.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF592FUT.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.455M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF906LEJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF906LEJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF906LEJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF906LEJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF906LEJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF906LEJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF906LEJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF906LEJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF592FUT.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF592FUT.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF592FUT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF592FUT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF592FUT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF592FUT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF592FUT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF592FUT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF906LEJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/76b82095-e1e6-4f37-b62d-efd5fbea83d7/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.455M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.455M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF906LEJ.crop_101-2bp.nodup_x_ctl.pooled.210M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/b1401b44-91c9-487d-a62c-c4961aa292fb/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF592FUT.crop_101-2bp.nodup_x_ctl.pooled.245M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -934107044491857715 chip.macs2_signal_track_pooled 8017075286431292737 BW FC -934107044491857715->8017075286431292737 -7375081003863540474 BW p-val -934107044491857715->-7375081003863540474 5000444621699857698 chip.call_peak_pooled 2914929500212416054 Peak (bfilt) 5000444621699857698->2914929500212416054 -3873941747741039103 Peak 5000444621699857698->-3873941747741039103 554225740445660824 chip.idr_ppr -3873941747741039103->554225740445660824 -4267971720554586205 chip.idr -3873941747741039103->-4267971720554586205 -7531660930024109052 chip.overlap -3873941747741039103->-7531660930024109052 7468845079825505137 chip.overlap_ppr -3873941747741039103->7468845079825505137 3638638724152859130 chip.pool_ta -7524574849667994949 TAG-ALIGN 3638638724152859130->-7524574849667994949 -7524574849667994949->-934107044491857715 -7524574849667994949->5000444621699857698 -7524574849667994949->554225740445660824 -7524574849667994949->-4267971720554586205 -7524574849667994949->-7531660930024109052 -7524574849667994949->7468845079825505137 -5180985216914239594 chip.call_peak -5389221821740417003 Peak (bfilt) -5180985216914239594->-5389221821740417003 7796019303561041654 Peak -5180985216914239594->7796019303561041654 7796019303561041654->-4267971720554586205 7796019303561041654->-7531660930024109052 4519294208690710312 chip.reproducibility_overlap 7796019303561041654->4519294208690710312 -1070821422489196586 chip.reproducibility_idr 7796019303561041654->-1070821422489196586 6941864515763140961 chip.bam2ta 3931083928788040533 TAG-ALIGN 6941864515763140961->3931083928788040533 3931083928788040533->3638638724152859130 3931083928788040533->-5180985216914239594 -4674961832928920904 chip.macs2_signal_track 3931083928788040533->-4674961832928920904 3931083928788040533->554225740445660824 3931083928788040533->4519294208690710312 3931083928788040533->-1070821422489196586 3931083928788040533->7468845079825505137 -8410616739414740850 chip.filter 270758596246179062 SAMstats QC -8410616739414740850->270758596246179062 -2414309590760357939 Filt/deduped BAM -8410616739414740850->-2414309590760357939 5123963259192847807 LibCmplx QC -8410616739414740850->5123963259192847807 -2414309590760357939->6941864515763140961 -4126800416326757671 chip.jsd -2414309590760357939->-4126800416326757671 3402510192958882693 chip.align -5017848646125937105 SAMstats QC 3402510192958882693->-5017848646125937105 -5500601776422330374 BAM 3402510192958882693->-5500601776422330374 -5500601776422330374->-8410616739414740850 -7767572059061691889 chip.xcor -879168492224931352 XCOR Plot -7767572059061691889->-879168492224931352 7586895681419991242 BW FC -4674961832928920904->7586895681419991242 -3420628738619781897 BW p-val -4674961832928920904->-3420628738619781897 6304335866821953671 FASTQ R1 (1) 6304335866821953671->3402510192958882693 6304335866821953671->-7767572059061691889 4289501877394358320 FASTQ R2 (1) 4289501877394358320->3402510192958882693 -6769543582041340322 chip.call_peak -2910842417937824969 Peak (bfilt) -6769543582041340322->-2910842417937824969 3719532395762372399 Peak -6769543582041340322->3719532395762372399 3719532395762372399->-4267971720554586205 3719532395762372399->-7531660930024109052 3719532395762372399->4519294208690710312 3719532395762372399->-1070821422489196586 1698103825384882714 chip.bam2ta 6936542839921162390 TAG-ALIGN 1698103825384882714->6936542839921162390 6936542839921162390->3638638724152859130 6936542839921162390->-6769543582041340322 -1708780715149675014 chip.macs2_signal_track 6936542839921162390->-1708780715149675014 6936542839921162390->554225740445660824 6936542839921162390->4519294208690710312 6936542839921162390->-1070821422489196586 6936542839921162390->7468845079825505137 -5876483148699107199 chip.filter 2443112361103554566 SAMstats QC -5876483148699107199->2443112361103554566 385163954385664192 Filt/deduped BAM -5876483148699107199->385163954385664192 3812437369908924491 LibCmplx QC -5876483148699107199->3812437369908924491 385163954385664192->1698103825384882714 385163954385664192->-4126800416326757671 -4424408268320410909 chip.align 3648894016673506101 SAMstats QC -4424408268320410909->3648894016673506101 -6605904210478619508 BAM -4424408268320410909->-6605904210478619508 -6605904210478619508->-5876483148699107199 2513723751961625495 chip.xcor -5311483930339551513 XCOR Plot 2513723751961625495->-5311483930339551513 8130625207094225889 BW FC -1708780715149675014->8130625207094225889 -4303263147528190835 BW p-val -1708780715149675014->-4303263147528190835 -5288100046421877401 FASTQ R1 (1) -5288100046421877401->-4424408268320410909 -5288100046421877401->2513723751961625495 -2894460042149738230 FASTQ R2 (1) -2894460042149738230->-4424408268320410909 5757497425143803684 chip.pool_ta_ctl 7325565213675011540 TAG-ALIGN 5757497425143803684->7325565213675011540 7325565213675011540->-934107044491857715 7325565213675011540->5000444621699857698 7325565213675011540->-5180985216914239594 7325565213675011540->-4674961832928920904 7325565213675011540->-6769543582041340322 7325565213675011540->-1708780715149675014 7325565213675011540->554225740445660824 7325565213675011540->4519294208690710312 7325565213675011540->-1070821422489196586 7325565213675011540->7468845079825505137 -4085837857070878125 chip.bam2ta_ctl -7326149594781447104 TAG-ALIGN -4085837857070878125->-7326149594781447104 -7326149594781447104->5757497425143803684 4792744836545012535 Filt/deduped BAM 4792744836545012535->-4085837857070878125 4792744836545012535->-4126800416326757671 -2582216348967163435 chip.bam2ta_ctl 465594805041990770 TAG-ALIGN -2582216348967163435->465594805041990770 465594805041990770->5757497425143803684 -6478948621318691016 Filt/deduped BAM -6478948621318691016->-2582216348967163435 -6478948621318691016->-4126800416326757671 -4730047824898001730 chip.bam2ta_ctl 5667532708932851822 TAG-ALIGN -4730047824898001730->5667532708932851822 5667532708932851822->5757497425143803684 -1137588477960951598 Filt/deduped BAM -1137588477960951598->-4730047824898001730 -1137588477960951598->-4126800416326757671 7138689412369707246 chip.bam2ta_ctl -5187968916208121023 TAG-ALIGN 7138689412369707246->-5187968916208121023 -5187968916208121023->5757497425143803684 8114766177221859676 Filt/deduped BAM 8114766177221859676->7138689412369707246 8114766177221859676->-4126800416326757671 6651555787129252841 chip.bam2ta_ctl 340009725467611491 TAG-ALIGN 6651555787129252841->340009725467611491 340009725467611491->5757497425143803684 -3018067735004190240 Filt/deduped BAM -3018067735004190240->6651555787129252841 -3018067735004190240->-4126800416326757671 -2784016702579441755 chip.bam2ta_ctl -2636852044048929301 TAG-ALIGN -2784016702579441755->-2636852044048929301 -2636852044048929301->5757497425143803684 6311285812155450691 Filt/deduped BAM 6311285812155450691->-2784016702579441755 6311285812155450691->-4126800416326757671 -7281320296498324214 chip.bam2ta_ctl 3127097301481551896 TAG-ALIGN -7281320296498324214->3127097301481551896 3127097301481551896->5757497425143803684 -4843278629581127144 Filt/deduped BAM -4843278629581127144->-7281320296498324214 -4843278629581127144->-4126800416326757671 -296469571611706423 chip.bam2ta_ctl 8118883573341166233 TAG-ALIGN -296469571611706423->8118883573341166233 8118883573341166233->5757497425143803684 -5009019532019419137 Filt/deduped BAM -5009019532019419137->-296469571611706423 -5009019532019419137->-4126800416326757671 -4719428434808400602 chip.bam2ta_ctl -7430203491194552648 TAG-ALIGN -4719428434808400602->-7430203491194552648 -7430203491194552648->5757497425143803684 1143194372444764750 Filt/deduped BAM 1143194372444764750->-4719428434808400602 1143194372444764750->-4126800416326757671 8597951204425797327 chip.bam2ta_ctl 4444804207768140210 TAG-ALIGN 8597951204425797327->4444804207768140210 4444804207768140210->5757497425143803684 6423688072993908918 Filt/deduped BAM 6423688072993908918->8597951204425797327 6423688072993908918->-4126800416326757671 7056004427532256551 chip.bam2ta_ctl -4835302599683684997 TAG-ALIGN 7056004427532256551->-4835302599683684997 -4835302599683684997->5757497425143803684 -1229307677290150168 Filt/deduped BAM -1229307677290150168->7056004427532256551 -1229307677290150168->-4126800416326757671 3036952069063643690 chip.bam2ta_ctl 6589540650193870313 TAG-ALIGN 3036952069063643690->6589540650193870313 6589540650193870313->5757497425143803684 -5311241131440944432 Filt/deduped BAM -5311241131440944432->3036952069063643690 -5311241131440944432->-4126800416326757671 -6721529050542232561 chip.bam2ta_ctl 7847853809347630428 TAG-ALIGN -6721529050542232561->7847853809347630428 7847853809347630428->5757497425143803684 3543531634482264499 Filt/deduped BAM 3543531634482264499->-6721529050542232561 3543531634482264499->-4126800416326757671 251467920402350977 chip.bam2ta_ctl 9213395606273689828 TAG-ALIGN 251467920402350977->9213395606273689828 9213395606273689828->5757497425143803684 -6170671311702089798 Filt/deduped BAM -6170671311702089798->251467920402350977 -6170671311702089798->-4126800416326757671 1850109674519040789 chip.bam2ta_ctl 6051846938339710356 TAG-ALIGN 1850109674519040789->6051846938339710356 6051846938339710356->5757497425143803684 -3076867628752363525 Filt/deduped BAM -3076867628752363525->1850109674519040789 -3076867628752363525->-4126800416326757671 -3685351952869891581 chip.bam2ta_ctl -6737700304290815367 TAG-ALIGN -3685351952869891581->-6737700304290815367 -6737700304290815367->5757497425143803684 6604005769616231509 Filt/deduped BAM 6604005769616231509->-3685351952869891581 6604005769616231509->-4126800416326757671 -8178507143164369521 chip.bam2ta_ctl -6038047444295922632 TAG-ALIGN -8178507143164369521->-6038047444295922632 -6038047444295922632->5757497425143803684 8374282268547868067 Filt/deduped BAM 8374282268547868067->-8178507143164369521 8374282268547868067->-4126800416326757671 -785315740193928520 chip.bam2ta_ctl 8350871046942354100 TAG-ALIGN -785315740193928520->8350871046942354100 8350871046942354100->5757497425143803684 4181787496736208983 Filt/deduped BAM 4181787496736208983->-785315740193928520 4181787496736208983->-4126800416326757671 -6413475358449830764 chip.bam2ta_ctl 4368093679180630011 TAG-ALIGN -6413475358449830764->4368093679180630011 4368093679180630011->5757497425143803684 1339300067670483071 Filt/deduped BAM 1339300067670483071->-6413475358449830764 1339300067670483071->-4126800416326757671 -287569203227458303 chip.bam2ta_ctl 9067091746807212210 TAG-ALIGN -287569203227458303->9067091746807212210 9067091746807212210->5757497425143803684 -459058228060484886 Filt/deduped BAM -459058228060484886->-287569203227458303 -459058228060484886->-4126800416326757671 -881960411539737601 chip.bam2ta_ctl -1664429667975550279 TAG-ALIGN -881960411539737601->-1664429667975550279 -1664429667975550279->5757497425143803684 -7418999225296720980 Filt/deduped BAM -7418999225296720980->-881960411539737601 -7418999225296720980->-4126800416326757671 7952590238009997616 chip.bam2ta_ctl -7264457541991218988 TAG-ALIGN 7952590238009997616->-7264457541991218988 -7264457541991218988->5757497425143803684 -4365897937271552981 Filt/deduped BAM -4365897937271552981->7952590238009997616 -4365897937271552981->-4126800416326757671 8268860878720022187 chip.bam2ta_ctl 805330180001519366 TAG-ALIGN 8268860878720022187->805330180001519366 805330180001519366->5757497425143803684 -243805826083942385 Filt/deduped BAM -243805826083942385->8268860878720022187 -243805826083942385->-4126800416326757671 3952810952404643355 chip.bam2ta_ctl -3102898976932187771 TAG-ALIGN 3952810952404643355->-3102898976932187771 -3102898976932187771->5757497425143803684 6811821868947112057 Filt/deduped BAM 6811821868947112057->3952810952404643355 6811821868947112057->-4126800416326757671 3278009291457625225 IDR Plot ppr 554225740445660824->3278009291457625225 4040053153201635710 IDR Peak ppr 554225740445660824->4040053153201635710 4040053153201635710->-1070821422489196586 -7629310181243394185 IDR Plot rep1_vs_rep2 -4267971720554586205->-7629310181243394185 7521903010293637084 IDR NPeak rep1_vs_rep2 -4267971720554586205->7521903010293637084 7521903010293637084->-1070821422489196586 6569916009327352330 Overlap Peak rep1_vs_rep2 -7531660930024109052->6569916009327352330 6569916009327352330->4519294208690710312 2989229349091096645 Overlap Peak optimal 4519294208690710312->2989229349091096645 -2764050942679400998 Overlap reproducibility 4519294208690710312->-2764050942679400998 2022173605286488724 IDR Peak optimal -1070821422489196586->2022173605286488724 -4027353786565331783 IDR reproducibility -1070821422489196586->-4027353786565331783 -8448017962393642034 Overlap Peak ppr 7468845079825505137->-8448017962393642034 -8448017962393642034->4519294208690710312 -8391862511005166936 JSD Plot -4126800416326757671->-8391862511005166936

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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