File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF741TKM.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF741TKM.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF741TKM.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF741TKM.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF741TKM.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF234GIA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF234GIA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF234GIA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF234GIA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF234GIA.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.592M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.592M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.592M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF741TKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF741TKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF741TKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF741TKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.297M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF741TKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF741TKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF741TKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF741TKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.297M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF234GIA.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF234GIA.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF234GIA.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF234GIA.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF234GIA.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF234GIA.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF234GIA.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF234GIA.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.592M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF741TKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.297M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF741TKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.297M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF741TKM.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF741TKM.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF741TKM.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF741TKM.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF741TKM.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF741TKM.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF234GIA.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF234GIA.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF234GIA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF234GIA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF234GIA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF234GIA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF234GIA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF234GIA.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/1436b697-1e0d-4edd-8404-be76ddd2ca2f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF741TKM.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/0dc5f096-3604-4880-859d-a24c739020af/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.592M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.592M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF741TKM.crop_101-2bp.nodup_x_ctl.pooled.297M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/03c45b3d-7b48-41d8-8d4a-c982f74d606e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF234GIA.crop_101-2bp.nodup_x_ctl.pooled.295M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5574917932741496790 chip.macs2_signal_track_pooled 7103863812976953400 BW FC 5574917932741496790->7103863812976953400 -8878975425584201734 BW p-val 5574917932741496790->-8878975425584201734 4028525441237543308 chip.call_peak_pooled -7674189093079271844 Peak (bfilt) 4028525441237543308->-7674189093079271844 6950880097934336371 Peak 4028525441237543308->6950880097934336371 6379037580618335005 chip.idr_ppr 6950880097934336371->6379037580618335005 -5918265331246829779 chip.idr 6950880097934336371->-5918265331246829779 2679041980678023754 chip.overlap 6950880097934336371->2679041980678023754 -5720697022709394995 chip.overlap_ppr 6950880097934336371->-5720697022709394995 4594138115934457902 chip.pool_ta 1477638345522390417 TAG-ALIGN 4594138115934457902->1477638345522390417 1477638345522390417->5574917932741496790 1477638345522390417->4028525441237543308 1477638345522390417->6379037580618335005 1477638345522390417->-5918265331246829779 1477638345522390417->2679041980678023754 1477638345522390417->-5720697022709394995 958301266118960287 chip.call_peak -9214052211898479388 Peak (bfilt) 958301266118960287->-9214052211898479388 7642220745795121771 Peak 958301266118960287->7642220745795121771 7642220745795121771->-5918265331246829779 7642220745795121771->2679041980678023754 -8992791407837454882 chip.reproducibility_overlap 7642220745795121771->-8992791407837454882 1509736824902250092 chip.reproducibility_idr 7642220745795121771->1509736824902250092 8633530432968688544 chip.bam2ta -1860870193054340959 TAG-ALIGN 8633530432968688544->-1860870193054340959 -1860870193054340959->4594138115934457902 -1860870193054340959->958301266118960287 9648017068226394 chip.macs2_signal_track -1860870193054340959->9648017068226394 -1860870193054340959->6379037580618335005 -1860870193054340959->-8992791407837454882 -1860870193054340959->1509736824902250092 -1860870193054340959->-5720697022709394995 3962544670016688435 chip.filter 3555217128502071108 SAMstats QC 3962544670016688435->3555217128502071108 3017616548541878975 Filt/deduped BAM 3962544670016688435->3017616548541878975 -7853338995965616822 LibCmplx QC 3962544670016688435->-7853338995965616822 3017616548541878975->8633530432968688544 3540513898298229157 chip.jsd 3017616548541878975->3540513898298229157 2287972175108495849 chip.align -7823360079568148057 SAMstats QC 2287972175108495849->-7823360079568148057 -6879298401630614333 BAM 2287972175108495849->-6879298401630614333 -6879298401630614333->3962544670016688435 -1361689593133182830 chip.xcor 2661182421635479008 XCOR Plot -1361689593133182830->2661182421635479008 -7238399725859172704 BW FC 9648017068226394->-7238399725859172704 7374343160454494504 BW p-val 9648017068226394->7374343160454494504 -1139182101053360844 FASTQ R1 (1) -1139182101053360844->2287972175108495849 -1139182101053360844->-1361689593133182830 -7010777812702176242 FASTQ R2 (1) -7010777812702176242->2287972175108495849 -3302485271855179401 chip.call_peak -6288926828239295252 Peak (bfilt) -3302485271855179401->-6288926828239295252 4412853588221509863 Peak -3302485271855179401->4412853588221509863 4412853588221509863->-5918265331246829779 4412853588221509863->2679041980678023754 4412853588221509863->-8992791407837454882 4412853588221509863->1509736824902250092 -8992471129022861929 chip.bam2ta -117957871291944881 TAG-ALIGN -8992471129022861929->-117957871291944881 -117957871291944881->4594138115934457902 -117957871291944881->-3302485271855179401 608264473976840476 chip.macs2_signal_track -117957871291944881->608264473976840476 -117957871291944881->6379037580618335005 -117957871291944881->-8992791407837454882 -117957871291944881->1509736824902250092 -117957871291944881->-5720697022709394995 -1681273747149522594 chip.filter -8269459857709630822 SAMstats QC -1681273747149522594->-8269459857709630822 6073978080527396229 Filt/deduped BAM -1681273747149522594->6073978080527396229 8980079536384352575 LibCmplx QC -1681273747149522594->8980079536384352575 6073978080527396229->-8992471129022861929 6073978080527396229->3540513898298229157 3844803237433973452 chip.align 1623976611219250877 SAMstats QC 3844803237433973452->1623976611219250877 -7259855652821174846 BAM 3844803237433973452->-7259855652821174846 -7259855652821174846->-1681273747149522594 3561945575264069213 chip.xcor 437326177358564419 XCOR Plot 3561945575264069213->437326177358564419 4300283091692880304 BW FC 608264473976840476->4300283091692880304 -5890352713014493697 BW p-val 608264473976840476->-5890352713014493697 6270134699830206482 FASTQ R1 (1) 6270134699830206482->3844803237433973452 6270134699830206482->3561945575264069213 498998512818857341 FASTQ R2 (1) 498998512818857341->3844803237433973452 874996786620753188 chip.pool_ta_ctl 138451941703922913 TAG-ALIGN 874996786620753188->138451941703922913 138451941703922913->5574917932741496790 138451941703922913->4028525441237543308 138451941703922913->958301266118960287 138451941703922913->9648017068226394 138451941703922913->-3302485271855179401 138451941703922913->608264473976840476 138451941703922913->6379037580618335005 138451941703922913->-8992791407837454882 138451941703922913->1509736824902250092 138451941703922913->-5720697022709394995 -6299825365997652658 chip.bam2ta_ctl 7610838440211310213 TAG-ALIGN -6299825365997652658->7610838440211310213 7610838440211310213->874996786620753188 -3791823659445082562 Filt/deduped BAM -3791823659445082562->-6299825365997652658 -3791823659445082562->3540513898298229157 5148874838609840305 chip.bam2ta_ctl 1044576967019440655 TAG-ALIGN 5148874838609840305->1044576967019440655 1044576967019440655->874996786620753188 -2882617313754785972 Filt/deduped BAM -2882617313754785972->5148874838609840305 -2882617313754785972->3540513898298229157 8882938849609909169 chip.bam2ta_ctl -8647594774383824238 TAG-ALIGN 8882938849609909169->-8647594774383824238 -8647594774383824238->874996786620753188 8351132883570017322 Filt/deduped BAM 8351132883570017322->8882938849609909169 8351132883570017322->3540513898298229157 -1049217525949847491 chip.bam2ta_ctl 7360659431405414552 TAG-ALIGN -1049217525949847491->7360659431405414552 7360659431405414552->874996786620753188 6625882047486306575 Filt/deduped BAM 6625882047486306575->-1049217525949847491 6625882047486306575->3540513898298229157 -8124308506691913817 chip.bam2ta_ctl 2846369682176373722 TAG-ALIGN -8124308506691913817->2846369682176373722 2846369682176373722->874996786620753188 -7324003209720762266 Filt/deduped BAM -7324003209720762266->-8124308506691913817 -7324003209720762266->3540513898298229157 -8795146587367963264 chip.bam2ta_ctl 8134074056817677795 TAG-ALIGN -8795146587367963264->8134074056817677795 8134074056817677795->874996786620753188 6892028091025036729 Filt/deduped BAM 6892028091025036729->-8795146587367963264 6892028091025036729->3540513898298229157 -8062765342369907188 chip.bam2ta_ctl -8008839661137267828 TAG-ALIGN -8062765342369907188->-8008839661137267828 -8008839661137267828->874996786620753188 -3004723856823066263 Filt/deduped BAM -3004723856823066263->-8062765342369907188 -3004723856823066263->3540513898298229157 393866019839183776 chip.bam2ta_ctl 5912464578145589715 TAG-ALIGN 393866019839183776->5912464578145589715 5912464578145589715->874996786620753188 6851431913137540295 Filt/deduped BAM 6851431913137540295->393866019839183776 6851431913137540295->3540513898298229157 -4479947888986183764 chip.bam2ta_ctl 457040519516973979 TAG-ALIGN -4479947888986183764->457040519516973979 457040519516973979->874996786620753188 3961901945997270690 Filt/deduped BAM 3961901945997270690->-4479947888986183764 3961901945997270690->3540513898298229157 6826171229673643699 chip.bam2ta_ctl 2356042200362812713 TAG-ALIGN 6826171229673643699->2356042200362812713 2356042200362812713->874996786620753188 -6237219320157934396 Filt/deduped BAM -6237219320157934396->6826171229673643699 -6237219320157934396->3540513898298229157 -5788905555551376258 chip.bam2ta_ctl -8256306423383491033 TAG-ALIGN -5788905555551376258->-8256306423383491033 -8256306423383491033->874996786620753188 -1982714116639585850 Filt/deduped BAM -1982714116639585850->-5788905555551376258 -1982714116639585850->3540513898298229157 -3861151876212614170 chip.bam2ta_ctl 3579471931466412850 TAG-ALIGN -3861151876212614170->3579471931466412850 3579471931466412850->874996786620753188 3042876669934620046 Filt/deduped BAM 3042876669934620046->-3861151876212614170 3042876669934620046->3540513898298229157 -4075333467653176965 chip.bam2ta_ctl -5243152116595837372 TAG-ALIGN -4075333467653176965->-5243152116595837372 -5243152116595837372->874996786620753188 2245209370928743580 Filt/deduped BAM 2245209370928743580->-4075333467653176965 2245209370928743580->3540513898298229157 99737188270190930 chip.bam2ta_ctl -901870620325839626 TAG-ALIGN 99737188270190930->-901870620325839626 -901870620325839626->874996786620753188 1034586466171553448 Filt/deduped BAM 1034586466171553448->99737188270190930 1034586466171553448->3540513898298229157 -7410672364445555252 chip.bam2ta_ctl 7886245359036108896 TAG-ALIGN -7410672364445555252->7886245359036108896 7886245359036108896->874996786620753188 5195398106522766957 Filt/deduped BAM 5195398106522766957->-7410672364445555252 5195398106522766957->3540513898298229157 -8780278869502210348 chip.bam2ta_ctl -2052672764052956096 TAG-ALIGN -8780278869502210348->-2052672764052956096 -2052672764052956096->874996786620753188 -287029798605683830 Filt/deduped BAM -287029798605683830->-8780278869502210348 -287029798605683830->3540513898298229157 6135756939842896156 chip.bam2ta_ctl -9211678785064668808 TAG-ALIGN 6135756939842896156->-9211678785064668808 -9211678785064668808->874996786620753188 4744514277628152535 Filt/deduped BAM 4744514277628152535->6135756939842896156 4744514277628152535->3540513898298229157 -4570551901587412058 chip.bam2ta_ctl 865030414347400879 TAG-ALIGN -4570551901587412058->865030414347400879 865030414347400879->874996786620753188 -7063818835347285685 Filt/deduped BAM -7063818835347285685->-4570551901587412058 -7063818835347285685->3540513898298229157 -5109587284231652297 chip.bam2ta_ctl 1369553688510181913 TAG-ALIGN -5109587284231652297->1369553688510181913 1369553688510181913->874996786620753188 -2210797553850118151 Filt/deduped BAM -2210797553850118151->-5109587284231652297 -2210797553850118151->3540513898298229157 8468298662314659783 chip.bam2ta_ctl 3184362010959207629 TAG-ALIGN 8468298662314659783->3184362010959207629 3184362010959207629->874996786620753188 -6674491420638458234 Filt/deduped BAM -6674491420638458234->8468298662314659783 -6674491420638458234->3540513898298229157 7583194849566748528 chip.bam2ta_ctl -6282115516257285933 TAG-ALIGN 7583194849566748528->-6282115516257285933 -6282115516257285933->874996786620753188 -4200891621149909774 Filt/deduped BAM -4200891621149909774->7583194849566748528 -4200891621149909774->3540513898298229157 2720731696954672441 chip.bam2ta_ctl -7114203352423077700 TAG-ALIGN 2720731696954672441->-7114203352423077700 -7114203352423077700->874996786620753188 2916127213763745685 Filt/deduped BAM 2916127213763745685->2720731696954672441 2916127213763745685->3540513898298229157 -7426933695849432709 chip.bam2ta_ctl 6252660141315100528 TAG-ALIGN -7426933695849432709->6252660141315100528 6252660141315100528->874996786620753188 3239308709094947802 Filt/deduped BAM 3239308709094947802->-7426933695849432709 3239308709094947802->3540513898298229157 -2036955901709422592 chip.bam2ta_ctl -6362437818158009173 TAG-ALIGN -2036955901709422592->-6362437818158009173 -6362437818158009173->874996786620753188 -6678511342581565297 Filt/deduped BAM -6678511342581565297->-2036955901709422592 -6678511342581565297->3540513898298229157 6094786500318850736 IDR Plot ppr 6379037580618335005->6094786500318850736 983759829933056316 IDR Peak ppr 6379037580618335005->983759829933056316 983759829933056316->1509736824902250092 7834450456842291133 IDR Plot rep1_vs_rep2 -5918265331246829779->7834450456842291133 7585263837773617185 IDR NPeak rep1_vs_rep2 -5918265331246829779->7585263837773617185 7585263837773617185->1509736824902250092 7630092816905847234 Overlap Peak rep1_vs_rep2 2679041980678023754->7630092816905847234 7630092816905847234->-8992791407837454882 -1161598161150227580 Overlap Peak optimal -8992791407837454882->-1161598161150227580 -5149911106190736625 Overlap reproducibility -8992791407837454882->-5149911106190736625 2445155856413720869 IDR Peak optimal 1509736824902250092->2445155856413720869 -152636784773533900 IDR reproducibility 1509736824902250092->-152636784773533900 91280317248732957 Overlap Peak ppr -5720697022709394995->91280317248732957 91280317248732957->-8992791407837454882 5742065595282833429 JSD Plot 3540513898298229157->5742065595282833429

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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