File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF083CVO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF083CVO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF083CVO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF083CVO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF083CVO.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF103HSX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF103HSX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF103HSX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF103HSX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF103HSX.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.351M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF083CVO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF083CVO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF083CVO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF083CVO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF083CVO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF083CVO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF083CVO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF083CVO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF103HSX.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF103HSX.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF103HSX.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF103HSX.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF103HSX.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF103HSX.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF103HSX.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF103HSX.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.351M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF083CVO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF083CVO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF083CVO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF083CVO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF083CVO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF083CVO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF083CVO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF083CVO.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF103HSX.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF103HSX.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF103HSX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF103HSX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF103HSX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF103HSX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF103HSX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF103HSX.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/1958b29a-d2ce-464f-936e-f7f075ea6a61/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF083CVO.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/601ecf6b-6fdc-4d04-ba8c-01ac60fe9f03/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c32d664b-43f6-4b18-a3a3-985c51c31222/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.351M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c32d664b-43f6-4b18-a3a3-985c51c31222/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.351M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF083CVO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/7eb8e748-5961-4a33-8af4-851ff3b6f2ae/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF103HSX.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -152178860447786053 chip.macs2_signal_track_pooled -8907717503854195011 BW FC -152178860447786053->-8907717503854195011 -428130952919573524 BW p-val -152178860447786053->-428130952919573524 8689227952125177831 chip.call_peak_pooled 4950700617797892640 Peak (bfilt) 8689227952125177831->4950700617797892640 -3768199861234002824 Peak 8689227952125177831->-3768199861234002824 4681878783655014309 chip.idr_ppr -3768199861234002824->4681878783655014309 4363117912821945652 chip.idr -3768199861234002824->4363117912821945652 8988027928222369550 chip.overlap -3768199861234002824->8988027928222369550 4140837286561262456 chip.overlap_ppr -3768199861234002824->4140837286561262456 -7198365106085001601 chip.pool_ta 5032330088213230584 TAG-ALIGN -7198365106085001601->5032330088213230584 5032330088213230584->-152178860447786053 5032330088213230584->8689227952125177831 5032330088213230584->4681878783655014309 5032330088213230584->4363117912821945652 5032330088213230584->8988027928222369550 5032330088213230584->4140837286561262456 6692945597548088269 chip.call_peak -5047708801041963381 Peak (bfilt) 6692945597548088269->-5047708801041963381 9006048188450601337 Peak 6692945597548088269->9006048188450601337 9006048188450601337->4363117912821945652 9006048188450601337->8988027928222369550 -5541388615195018055 chip.reproducibility_overlap 9006048188450601337->-5541388615195018055 -8342389313908171226 chip.reproducibility_idr 9006048188450601337->-8342389313908171226 6502004015697863254 chip.bam2ta -7137857519586431189 TAG-ALIGN 6502004015697863254->-7137857519586431189 -7137857519586431189->-7198365106085001601 -7137857519586431189->6692945597548088269 -89650231869741035 chip.macs2_signal_track -7137857519586431189->-89650231869741035 -7137857519586431189->4681878783655014309 -7137857519586431189->-5541388615195018055 -7137857519586431189->-8342389313908171226 -7137857519586431189->4140837286561262456 -7376507550103718149 chip.filter -7847939152114468379 SAMstats QC -7376507550103718149->-7847939152114468379 4044370199767853771 Filt/deduped BAM -7376507550103718149->4044370199767853771 -1378169847425333597 LibCmplx QC -7376507550103718149->-1378169847425333597 4044370199767853771->6502004015697863254 1295787311231452285 chip.jsd 4044370199767853771->1295787311231452285 64264569811480098 chip.align -5094292191215876512 SAMstats QC 64264569811480098->-5094292191215876512 -5188016937874626953 BAM 64264569811480098->-5188016937874626953 -5188016937874626953->-7376507550103718149 3370104270528417381 chip.xcor 1596368681845745067 XCOR Plot 3370104270528417381->1596368681845745067 1291567600907358161 BW FC -89650231869741035->1291567600907358161 -8876499497377379446 BW p-val -89650231869741035->-8876499497377379446 3874461326828290912 FASTQ R1 (1) 3874461326828290912->64264569811480098 3874461326828290912->3370104270528417381 -148585695815236781 FASTQ R2 (1) -148585695815236781->64264569811480098 1720004499617901784 chip.call_peak -1268924785269943341 Peak (bfilt) 1720004499617901784->-1268924785269943341 -1691025073936536281 Peak 1720004499617901784->-1691025073936536281 -1691025073936536281->4363117912821945652 -1691025073936536281->8988027928222369550 -1691025073936536281->-5541388615195018055 -1691025073936536281->-8342389313908171226 3146048746833499301 chip.bam2ta -9133542493212236836 TAG-ALIGN 3146048746833499301->-9133542493212236836 -9133542493212236836->-7198365106085001601 -9133542493212236836->1720004499617901784 2808321709074276331 chip.macs2_signal_track -9133542493212236836->2808321709074276331 -9133542493212236836->4681878783655014309 -9133542493212236836->-5541388615195018055 -9133542493212236836->-8342389313908171226 -9133542493212236836->4140837286561262456 1773163701764960514 chip.filter 4783825475942883950 SAMstats QC 1773163701764960514->4783825475942883950 7299617355933192354 Filt/deduped BAM 1773163701764960514->7299617355933192354 -1197223786389433453 LibCmplx QC 1773163701764960514->-1197223786389433453 7299617355933192354->3146048746833499301 7299617355933192354->1295787311231452285 -4290752339114544342 chip.align -3047093771201384498 SAMstats QC -4290752339114544342->-3047093771201384498 1994606425270992936 BAM -4290752339114544342->1994606425270992936 1994606425270992936->1773163701764960514 2838503930732600887 chip.xcor 7228228393211281086 XCOR Plot 2838503930732600887->7228228393211281086 2227116202219885243 BW FC 2808321709074276331->2227116202219885243 6011840430461153167 BW p-val 2808321709074276331->6011840430461153167 6533985417030296106 FASTQ R1 (1) 6533985417030296106->-4290752339114544342 6533985417030296106->2838503930732600887 2150546440228650317 FASTQ R2 (1) 2150546440228650317->-4290752339114544342 7888850670948884621 chip.pool_ta_ctl 2692211859397601469 TAG-ALIGN 7888850670948884621->2692211859397601469 2692211859397601469->-152178860447786053 2692211859397601469->8689227952125177831 2692211859397601469->6692945597548088269 2692211859397601469->-89650231869741035 2692211859397601469->1720004499617901784 2692211859397601469->2808321709074276331 2692211859397601469->4681878783655014309 2692211859397601469->-5541388615195018055 2692211859397601469->-8342389313908171226 2692211859397601469->4140837286561262456 -5601386626543374400 chip.bam2ta_ctl -7553738026878349478 TAG-ALIGN -5601386626543374400->-7553738026878349478 -7553738026878349478->7888850670948884621 -8719669770342970335 Filt/deduped BAM -8719669770342970335->-5601386626543374400 -8719669770342970335->1295787311231452285 9012098730281168097 chip.bam2ta_ctl 7687597371321551622 TAG-ALIGN 9012098730281168097->7687597371321551622 7687597371321551622->7888850670948884621 333658784132076171 Filt/deduped BAM 333658784132076171->9012098730281168097 333658784132076171->1295787311231452285 -3127934856858526630 chip.bam2ta_ctl 1429281385392567603 TAG-ALIGN -3127934856858526630->1429281385392567603 1429281385392567603->7888850670948884621 -5795380848724074174 Filt/deduped BAM -5795380848724074174->-3127934856858526630 -5795380848724074174->1295787311231452285 1668637862143210365 chip.bam2ta_ctl 8404346848666442248 TAG-ALIGN 1668637862143210365->8404346848666442248 8404346848666442248->7888850670948884621 7281265128542590863 Filt/deduped BAM 7281265128542590863->1668637862143210365 7281265128542590863->1295787311231452285 2661417775792300759 chip.bam2ta_ctl -7086491485327766001 TAG-ALIGN 2661417775792300759->-7086491485327766001 -7086491485327766001->7888850670948884621 -3879073257381511195 Filt/deduped BAM -3879073257381511195->2661417775792300759 -3879073257381511195->1295787311231452285 6794209793100548859 chip.bam2ta_ctl 8198038486807179047 TAG-ALIGN 6794209793100548859->8198038486807179047 8198038486807179047->7888850670948884621 3893987547320116578 Filt/deduped BAM 3893987547320116578->6794209793100548859 3893987547320116578->1295787311231452285 -5213236816541703308 chip.bam2ta_ctl -677939938407974445 TAG-ALIGN -5213236816541703308->-677939938407974445 -677939938407974445->7888850670948884621 8835451610976795320 Filt/deduped BAM 8835451610976795320->-5213236816541703308 8835451610976795320->1295787311231452285 -4500463550951347491 chip.bam2ta_ctl 8560494084935253309 TAG-ALIGN -4500463550951347491->8560494084935253309 8560494084935253309->7888850670948884621 -1456008996664252348 Filt/deduped BAM -1456008996664252348->-4500463550951347491 -1456008996664252348->1295787311231452285 -5354977313234437448 chip.bam2ta_ctl 1219404777850818048 TAG-ALIGN -5354977313234437448->1219404777850818048 1219404777850818048->7888850670948884621 5602360237503110427 Filt/deduped BAM 5602360237503110427->-5354977313234437448 5602360237503110427->1295787311231452285 -7558549715876962221 chip.bam2ta_ctl 4499503011530337691 TAG-ALIGN -7558549715876962221->4499503011530337691 4499503011530337691->7888850670948884621 -8277867654211845862 Filt/deduped BAM -8277867654211845862->-7558549715876962221 -8277867654211845862->1295787311231452285 -2534203170664527572 chip.bam2ta_ctl -6707032153467775827 TAG-ALIGN -2534203170664527572->-6707032153467775827 -6707032153467775827->7888850670948884621 -3702176549433388818 Filt/deduped BAM -3702176549433388818->-2534203170664527572 -3702176549433388818->1295787311231452285 7321563392115051476 chip.bam2ta_ctl -6390332106895991469 TAG-ALIGN 7321563392115051476->-6390332106895991469 -6390332106895991469->7888850670948884621 9057042943848308067 Filt/deduped BAM 9057042943848308067->7321563392115051476 9057042943848308067->1295787311231452285 -7347532295299103662 chip.bam2ta_ctl 2934814461497124612 TAG-ALIGN -7347532295299103662->2934814461497124612 2934814461497124612->7888850670948884621 -1302551283842304003 Filt/deduped BAM -1302551283842304003->-7347532295299103662 -1302551283842304003->1295787311231452285 -755369612963507330 chip.bam2ta_ctl 4394233552777872752 TAG-ALIGN -755369612963507330->4394233552777872752 4394233552777872752->7888850670948884621 -3351154102725626494 Filt/deduped BAM -3351154102725626494->-755369612963507330 -3351154102725626494->1295787311231452285 -4276240725162964664 chip.bam2ta_ctl 2020038380638136902 TAG-ALIGN -4276240725162964664->2020038380638136902 2020038380638136902->7888850670948884621 -8033021238101556185 Filt/deduped BAM -8033021238101556185->-4276240725162964664 -8033021238101556185->1295787311231452285 -8601317262995980209 chip.bam2ta_ctl -1804318642316351227 TAG-ALIGN -8601317262995980209->-1804318642316351227 -1804318642316351227->7888850670948884621 3083508004794010682 Filt/deduped BAM 3083508004794010682->-8601317262995980209 3083508004794010682->1295787311231452285 2941357107414216793 chip.bam2ta_ctl -7219199696393511718 TAG-ALIGN 2941357107414216793->-7219199696393511718 -7219199696393511718->7888850670948884621 1394479038611076156 Filt/deduped BAM 1394479038611076156->2941357107414216793 1394479038611076156->1295787311231452285 -4816111888842263163 chip.bam2ta_ctl -8589909077625615578 TAG-ALIGN -4816111888842263163->-8589909077625615578 -8589909077625615578->7888850670948884621 -2236799308045540169 Filt/deduped BAM -2236799308045540169->-4816111888842263163 -2236799308045540169->1295787311231452285 947022740470719290 chip.bam2ta_ctl -5067923497160218734 TAG-ALIGN 947022740470719290->-5067923497160218734 -5067923497160218734->7888850670948884621 954259772174821017 Filt/deduped BAM 954259772174821017->947022740470719290 954259772174821017->1295787311231452285 4094302858120857175 chip.bam2ta_ctl -7688861533093860372 TAG-ALIGN 4094302858120857175->-7688861533093860372 -7688861533093860372->7888850670948884621 -8102238861583998159 Filt/deduped BAM -8102238861583998159->4094302858120857175 -8102238861583998159->1295787311231452285 3813249483084435348 chip.bam2ta_ctl -1715170354448230037 TAG-ALIGN 3813249483084435348->-1715170354448230037 -1715170354448230037->7888850670948884621 3157584905492547738 Filt/deduped BAM 3157584905492547738->3813249483084435348 3157584905492547738->1295787311231452285 5597700194881934226 chip.bam2ta_ctl 6166053342487088633 TAG-ALIGN 5597700194881934226->6166053342487088633 6166053342487088633->7888850670948884621 -375771085094238279 Filt/deduped BAM -375771085094238279->5597700194881934226 -375771085094238279->1295787311231452285 -1946618015327588628 chip.bam2ta_ctl 2586946921231955487 TAG-ALIGN -1946618015327588628->2586946921231955487 2586946921231955487->7888850670948884621 3535205908266102892 Filt/deduped BAM 3535205908266102892->-1946618015327588628 3535205908266102892->1295787311231452285 -1478951128152317179 chip.bam2ta_ctl 5938418935744201542 TAG-ALIGN -1478951128152317179->5938418935744201542 5938418935744201542->7888850670948884621 -4601082076290646667 Filt/deduped BAM -4601082076290646667->-1478951128152317179 -4601082076290646667->1295787311231452285 -4777356719437917044 IDR Plot ppr 4681878783655014309->-4777356719437917044 6660672597140655555 IDR Peak ppr 4681878783655014309->6660672597140655555 6660672597140655555->-8342389313908171226 595803751295609661 IDR Plot rep1_vs_rep2 4363117912821945652->595803751295609661 897910681284190710 IDR NPeak rep1_vs_rep2 4363117912821945652->897910681284190710 897910681284190710->-8342389313908171226 7883771592897370373 Overlap Peak rep1_vs_rep2 8988027928222369550->7883771592897370373 7883771592897370373->-5541388615195018055 8605387329650087295 Overlap Peak optimal -5541388615195018055->8605387329650087295 3068303931600337965 Overlap reproducibility -5541388615195018055->3068303931600337965 2660354319074228179 IDR Peak optimal -8342389313908171226->2660354319074228179 -6035672524499267297 IDR reproducibility -8342389313908171226->-6035672524499267297 4723478162950022256 Overlap Peak ppr 4140837286561262456->4723478162950022256 4723478162950022256->-5541388615195018055 -8970509941033626319 JSD Plot 1295787311231452285->-8970509941033626319

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