File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF802KGS.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF802KGS.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF802KGS.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF802KGS.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF802KGS.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF602URB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF602URB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF602URB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF602URB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF602URB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF802KGS.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF802KGS.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF802KGS.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF802KGS.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF802KGS.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF802KGS.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF802KGS.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF802KGS.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF602URB.crop_101-2bp.nodup.pr1_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF602URB.crop_101-2bp.nodup.pr1_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF602URB.crop_101-2bp.nodup.pr1_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF602URB.crop_101-2bp.nodup.pr1_x_ctl.pooled.280M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF602URB.crop_101-2bp.nodup.pr2_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF602URB.crop_101-2bp.nodup.pr2_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF602URB.crop_101-2bp.nodup.pr2_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF602URB.crop_101-2bp.nodup.pr2_x_ctl.pooled.280M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF802KGS.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF802KGS.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF802KGS.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF802KGS.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF802KGS.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF802KGS.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF802KGS.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF802KGS.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF602URB.crop_101-2bp.nodup.pr1_x_ctl.pooled.280M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF602URB.crop_101-2bp.nodup.pr2_x_ctl.pooled.280M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF602URB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF602URB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF602URB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF602URB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF602URB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2d00fee1-5919-4d4b-9bbc-98ee0ae13f7a/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF602URB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/67c07928-c988-4cab-827b-826a1e33de21/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF802KGS.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/2618f6f5-c9de-42ee-b0b0-6ca3b23a517d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.502M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.502M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF802KGS.crop_101-2bp.nodup_x_ctl.pooled.221M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6901af07-dc5f-4a71-91d2-9f392d66a089/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF602URB.crop_101-2bp.nodup_x_ctl.pooled.280M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5989099737758661544 chip.macs2_signal_track_pooled -6688952431067806384 BW FC -5989099737758661544->-6688952431067806384 8766749349397143263 BW p-val -5989099737758661544->8766749349397143263 -2740240632365160367 chip.call_peak_pooled 3041670660376959884 Peak (bfilt) -2740240632365160367->3041670660376959884 -667413215393194903 Peak -2740240632365160367->-667413215393194903 4076505785473201959 chip.idr_ppr -667413215393194903->4076505785473201959 2609666068175440069 chip.idr -667413215393194903->2609666068175440069 1980061381336472830 chip.overlap -667413215393194903->1980061381336472830 -1172892515024534039 chip.overlap_ppr -667413215393194903->-1172892515024534039 -1310061808535584394 chip.pool_ta 2038464389353598304 TAG-ALIGN -1310061808535584394->2038464389353598304 2038464389353598304->-5989099737758661544 2038464389353598304->-2740240632365160367 2038464389353598304->4076505785473201959 2038464389353598304->2609666068175440069 2038464389353598304->1980061381336472830 2038464389353598304->-1172892515024534039 8097786090302942704 chip.call_peak 1208394585891561083 Peak (bfilt) 8097786090302942704->1208394585891561083 -4529206805295131775 Peak 8097786090302942704->-4529206805295131775 -4529206805295131775->2609666068175440069 -4529206805295131775->1980061381336472830 -8769742693963465904 chip.reproducibility_overlap -4529206805295131775->-8769742693963465904 -206866472240999987 chip.reproducibility_idr -4529206805295131775->-206866472240999987 8938646252934550735 chip.bam2ta 7581055269836285782 TAG-ALIGN 8938646252934550735->7581055269836285782 7581055269836285782->-1310061808535584394 7581055269836285782->8097786090302942704 6229232029055300466 chip.macs2_signal_track 7581055269836285782->6229232029055300466 7581055269836285782->4076505785473201959 7581055269836285782->-8769742693963465904 7581055269836285782->-206866472240999987 7581055269836285782->-1172892515024534039 2291592121578283314 chip.filter 6516402525091488444 SAMstats QC 2291592121578283314->6516402525091488444 -6815861542555327189 Filt/deduped BAM 2291592121578283314->-6815861542555327189 3440527137735857998 LibCmplx QC 2291592121578283314->3440527137735857998 -6815861542555327189->8938646252934550735 -5577715016432083943 chip.jsd -6815861542555327189->-5577715016432083943 -7673915015235703116 chip.align -5390972517321764456 SAMstats QC -7673915015235703116->-5390972517321764456 -2552417251641425658 BAM -7673915015235703116->-2552417251641425658 -2552417251641425658->2291592121578283314 -5428443123013349262 chip.xcor -8631747074548233195 XCOR Plot -5428443123013349262->-8631747074548233195 -8159478820081027366 BW FC 6229232029055300466->-8159478820081027366 2422431837708211714 BW p-val 6229232029055300466->2422431837708211714 -5881218291121514525 FASTQ R1 (1) -5881218291121514525->-7673915015235703116 -5881218291121514525->-5428443123013349262 4146530613637108131 FASTQ R2 (1) 4146530613637108131->-7673915015235703116 -4446550788587241760 chip.call_peak -7340825737555780095 Peak (bfilt) -4446550788587241760->-7340825737555780095 -3646615322110774939 Peak -4446550788587241760->-3646615322110774939 -3646615322110774939->2609666068175440069 -3646615322110774939->1980061381336472830 -3646615322110774939->-8769742693963465904 -3646615322110774939->-206866472240999987 -5225022892140715423 chip.bam2ta -3733834212891505664 TAG-ALIGN -5225022892140715423->-3733834212891505664 -3733834212891505664->-1310061808535584394 -3733834212891505664->-4446550788587241760 -3378696016624579551 chip.macs2_signal_track -3733834212891505664->-3378696016624579551 -3733834212891505664->4076505785473201959 -3733834212891505664->-8769742693963465904 -3733834212891505664->-206866472240999987 -3733834212891505664->-1172892515024534039 -6633431897661275462 chip.filter 7333251439538185955 SAMstats QC -6633431897661275462->7333251439538185955 6765875335238032044 Filt/deduped BAM -6633431897661275462->6765875335238032044 -7149935224329250256 LibCmplx QC -6633431897661275462->-7149935224329250256 6765875335238032044->-5225022892140715423 6765875335238032044->-5577715016432083943 4572677431722566945 chip.align -5017292359211490160 SAMstats QC 4572677431722566945->-5017292359211490160 -2291101378380587943 BAM 4572677431722566945->-2291101378380587943 -2291101378380587943->-6633431897661275462 5032748406671704745 chip.xcor -9039208282774192246 XCOR Plot 5032748406671704745->-9039208282774192246 -7443946502128305839 BW FC -3378696016624579551->-7443946502128305839 -8928605929898775806 BW p-val -3378696016624579551->-8928605929898775806 -7068752186182338191 FASTQ R1 (1) -7068752186182338191->4572677431722566945 -7068752186182338191->5032748406671704745 -1795699757538246307 FASTQ R2 (1) -1795699757538246307->4572677431722566945 4934403296219588429 chip.pool_ta_ctl 4988141436572273843 TAG-ALIGN 4934403296219588429->4988141436572273843 4988141436572273843->-5989099737758661544 4988141436572273843->-2740240632365160367 4988141436572273843->8097786090302942704 4988141436572273843->6229232029055300466 4988141436572273843->-4446550788587241760 4988141436572273843->-3378696016624579551 4988141436572273843->4076505785473201959 4988141436572273843->-8769742693963465904 4988141436572273843->-206866472240999987 4988141436572273843->-1172892515024534039 -4954044029562976667 chip.bam2ta_ctl -206950880517775275 TAG-ALIGN -4954044029562976667->-206950880517775275 -206950880517775275->4934403296219588429 6548386619750705526 Filt/deduped BAM 6548386619750705526->-4954044029562976667 6548386619750705526->-5577715016432083943 2272666936507021903 chip.bam2ta_ctl 6660829378556809388 TAG-ALIGN 2272666936507021903->6660829378556809388 6660829378556809388->4934403296219588429 5327727745358828520 Filt/deduped BAM 5327727745358828520->2272666936507021903 5327727745358828520->-5577715016432083943 -3047374855336476723 chip.bam2ta_ctl -8134751793648138582 TAG-ALIGN -3047374855336476723->-8134751793648138582 -8134751793648138582->4934403296219588429 -8281230136262217251 Filt/deduped BAM -8281230136262217251->-3047374855336476723 -8281230136262217251->-5577715016432083943 4317364409352948356 chip.bam2ta_ctl 3635258978853223872 TAG-ALIGN 4317364409352948356->3635258978853223872 3635258978853223872->4934403296219588429 -860977549429488859 Filt/deduped BAM -860977549429488859->4317364409352948356 -860977549429488859->-5577715016432083943 7131243335366073280 chip.bam2ta_ctl -5445530771769900404 TAG-ALIGN 7131243335366073280->-5445530771769900404 -5445530771769900404->4934403296219588429 6944493068809664712 Filt/deduped BAM 6944493068809664712->7131243335366073280 6944493068809664712->-5577715016432083943 743544651270324751 chip.bam2ta_ctl 9151997892875918513 TAG-ALIGN 743544651270324751->9151997892875918513 9151997892875918513->4934403296219588429 -6641899676823163917 Filt/deduped BAM -6641899676823163917->743544651270324751 -6641899676823163917->-5577715016432083943 8648905190912736077 chip.bam2ta_ctl 3847470340669423404 TAG-ALIGN 8648905190912736077->3847470340669423404 3847470340669423404->4934403296219588429 7758700883826003831 Filt/deduped BAM 7758700883826003831->8648905190912736077 7758700883826003831->-5577715016432083943 -1582535342875180088 chip.bam2ta_ctl -6049868842230747238 TAG-ALIGN -1582535342875180088->-6049868842230747238 -6049868842230747238->4934403296219588429 748822170871355839 Filt/deduped BAM 748822170871355839->-1582535342875180088 748822170871355839->-5577715016432083943 8294561543163738215 chip.bam2ta_ctl -8918474250335078225 TAG-ALIGN 8294561543163738215->-8918474250335078225 -8918474250335078225->4934403296219588429 -9143307409323143458 Filt/deduped BAM -9143307409323143458->8294561543163738215 -9143307409323143458->-5577715016432083943 7229455820811481034 chip.bam2ta_ctl 3056323882792783705 TAG-ALIGN 7229455820811481034->3056323882792783705 3056323882792783705->4934403296219588429 5669095475749072958 Filt/deduped BAM 5669095475749072958->7229455820811481034 5669095475749072958->-5577715016432083943 -6124664673795554820 chip.bam2ta_ctl 3091024178893044787 TAG-ALIGN -6124664673795554820->3091024178893044787 3091024178893044787->4934403296219588429 -8361800877706193793 Filt/deduped BAM -8361800877706193793->-6124664673795554820 -8361800877706193793->-5577715016432083943 -2869644762776722904 chip.bam2ta_ctl -7122377939116200694 TAG-ALIGN -2869644762776722904->-7122377939116200694 -7122377939116200694->4934403296219588429 -936003520492928829 Filt/deduped BAM -936003520492928829->-2869644762776722904 -936003520492928829->-5577715016432083943 55269701879791893 chip.bam2ta_ctl 849071442240746309 TAG-ALIGN 55269701879791893->849071442240746309 849071442240746309->4934403296219588429 -958603612491543902 Filt/deduped BAM -958603612491543902->55269701879791893 -958603612491543902->-5577715016432083943 -1765597276927971927 chip.bam2ta_ctl -5138182000738857568 TAG-ALIGN -1765597276927971927->-5138182000738857568 -5138182000738857568->4934403296219588429 -7316254366646245878 Filt/deduped BAM -7316254366646245878->-1765597276927971927 -7316254366646245878->-5577715016432083943 -5705546074078959562 chip.bam2ta_ctl -4865681439918931471 TAG-ALIGN -5705546074078959562->-4865681439918931471 -4865681439918931471->4934403296219588429 -2672862435803715209 Filt/deduped BAM -2672862435803715209->-5705546074078959562 -2672862435803715209->-5577715016432083943 8467438191627712798 chip.bam2ta_ctl 5219231661962541113 TAG-ALIGN 8467438191627712798->5219231661962541113 5219231661962541113->4934403296219588429 7995229205027500828 Filt/deduped BAM 7995229205027500828->8467438191627712798 7995229205027500828->-5577715016432083943 -446464867993965378 chip.bam2ta_ctl -3943284272391780863 TAG-ALIGN -446464867993965378->-3943284272391780863 -3943284272391780863->4934403296219588429 1327928414784929581 Filt/deduped BAM 1327928414784929581->-446464867993965378 1327928414784929581->-5577715016432083943 -2875678199814075345 chip.bam2ta_ctl -2156213675621725591 TAG-ALIGN -2875678199814075345->-2156213675621725591 -2156213675621725591->4934403296219588429 8029096245893559415 Filt/deduped BAM 8029096245893559415->-2875678199814075345 8029096245893559415->-5577715016432083943 702891952767696146 chip.bam2ta_ctl -631063078164161151 TAG-ALIGN 702891952767696146->-631063078164161151 -631063078164161151->4934403296219588429 -2100812836820574545 Filt/deduped BAM -2100812836820574545->702891952767696146 -2100812836820574545->-5577715016432083943 -43775258533996015 chip.bam2ta_ctl 989683141815169380 TAG-ALIGN -43775258533996015->989683141815169380 989683141815169380->4934403296219588429 -3678688675619805640 Filt/deduped BAM -3678688675619805640->-43775258533996015 -3678688675619805640->-5577715016432083943 8646894604274553568 chip.bam2ta_ctl -5829818880972831077 TAG-ALIGN 8646894604274553568->-5829818880972831077 -5829818880972831077->4934403296219588429 8063775419840979753 Filt/deduped BAM 8063775419840979753->8646894604274553568 8063775419840979753->-5577715016432083943 1098581900772913373 chip.bam2ta_ctl -7358992004700538188 TAG-ALIGN 1098581900772913373->-7358992004700538188 -7358992004700538188->4934403296219588429 1255646036809535330 Filt/deduped BAM 1255646036809535330->1098581900772913373 1255646036809535330->-5577715016432083943 7426445604291384918 chip.bam2ta_ctl -5098995150553359683 TAG-ALIGN 7426445604291384918->-5098995150553359683 -5098995150553359683->4934403296219588429 8799300489186206979 Filt/deduped BAM 8799300489186206979->7426445604291384918 8799300489186206979->-5577715016432083943 -1028289156211176844 chip.bam2ta_ctl -2949436932751197759 TAG-ALIGN -1028289156211176844->-2949436932751197759 -2949436932751197759->4934403296219588429 -7032301142873599530 Filt/deduped BAM -7032301142873599530->-1028289156211176844 -7032301142873599530->-5577715016432083943 -3868486476036489829 IDR Plot ppr 4076505785473201959->-3868486476036489829 3271727289880005319 IDR Peak ppr 4076505785473201959->3271727289880005319 3271727289880005319->-206866472240999987 5425164824601916068 IDR Plot rep1_vs_rep2 2609666068175440069->5425164824601916068 615126594453245522 IDR NPeak rep1_vs_rep2 2609666068175440069->615126594453245522 615126594453245522->-206866472240999987 4883115154649861365 Overlap Peak rep1_vs_rep2 1980061381336472830->4883115154649861365 4883115154649861365->-8769742693963465904 -1856365741779330574 Overlap Peak optimal -8769742693963465904->-1856365741779330574 7351906777619961318 Overlap reproducibility -8769742693963465904->7351906777619961318 8900513539853715925 IDR Peak optimal -206866472240999987->8900513539853715925 3861575613067708305 IDR reproducibility -206866472240999987->3861575613067708305 -5103270538615703884 Overlap Peak ppr -1172892515024534039->-5103270538615703884 -5103270538615703884->-8769742693963465904 4704107434780610851 JSD Plot -5577715016432083943->4704107434780610851

UCSC browser tracks

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