File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF033ZFD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF033ZFD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF033ZFD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF033ZFD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF033ZFD.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF204KOO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF204KOO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF204KOO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF204KOO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF204KOO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.562M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.562M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.562M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF033ZFD.crop_101-2bp.nodup.pr1_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF033ZFD.crop_101-2bp.nodup.pr1_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF033ZFD.crop_101-2bp.nodup.pr1_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF033ZFD.crop_101-2bp.nodup.pr1_x_ctl.pooled.331M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF033ZFD.crop_101-2bp.nodup.pr2_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF033ZFD.crop_101-2bp.nodup.pr2_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF033ZFD.crop_101-2bp.nodup.pr2_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF033ZFD.crop_101-2bp.nodup.pr2_x_ctl.pooled.331M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204KOO.crop_101-2bp.nodup.pr1_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204KOO.crop_101-2bp.nodup.pr1_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204KOO.crop_101-2bp.nodup.pr1_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204KOO.crop_101-2bp.nodup.pr1_x_ctl.pooled.231M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204KOO.crop_101-2bp.nodup.pr2_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204KOO.crop_101-2bp.nodup.pr2_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204KOO.crop_101-2bp.nodup.pr2_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204KOO.crop_101-2bp.nodup.pr2_x_ctl.pooled.231M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.562M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF033ZFD.crop_101-2bp.nodup.pr1_x_ctl.pooled.331M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF033ZFD.crop_101-2bp.nodup.pr2_x_ctl.pooled.331M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF033ZFD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF033ZFD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF033ZFD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF033ZFD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF033ZFD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF033ZFD.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204KOO.crop_101-2bp.nodup.pr1_x_ctl.pooled.231M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204KOO.crop_101-2bp.nodup.pr2_x_ctl.pooled.231M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF204KOO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF204KOO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF204KOO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF204KOO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF204KOO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF204KOO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF033ZFD.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/1c5f2f8d-5061-4dff-b7b3-11e6b7ffc5b8/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.562M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.562M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF033ZFD.crop_101-2bp.nodup_x_ctl.pooled.331M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b2509f5-433d-43d8-9080-3bd27764cc1d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF204KOO.crop_101-2bp.nodup_x_ctl.pooled.231M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 1984105371973046450 chip.macs2_signal_track_pooled -4854836339632587338 BW FC 1984105371973046450->-4854836339632587338 -6414139806383043695 BW p-val 1984105371973046450->-6414139806383043695 8783689538179278579 chip.call_peak_pooled 5485932871098891528 Peak (bfilt) 8783689538179278579->5485932871098891528 -3883597691379127544 Peak 8783689538179278579->-3883597691379127544 3616446002471519003 chip.idr_ppr -3883597691379127544->3616446002471519003 -9061141129811107097 chip.idr -3883597691379127544->-9061141129811107097 7293456003269769862 chip.overlap -3883597691379127544->7293456003269769862 -5106078121488436375 chip.overlap_ppr -3883597691379127544->-5106078121488436375 -4589437900418069577 chip.pool_ta 6218148491360956722 TAG-ALIGN -4589437900418069577->6218148491360956722 6218148491360956722->1984105371973046450 6218148491360956722->8783689538179278579 6218148491360956722->3616446002471519003 6218148491360956722->-9061141129811107097 6218148491360956722->7293456003269769862 6218148491360956722->-5106078121488436375 -3499745045584235516 chip.call_peak -4912558985171345754 Peak (bfilt) -3499745045584235516->-4912558985171345754 4410726835499766444 Peak -3499745045584235516->4410726835499766444 4410726835499766444->-9061141129811107097 4410726835499766444->7293456003269769862 3754725100377204744 chip.reproducibility_overlap 4410726835499766444->3754725100377204744 -7403801395881320807 chip.reproducibility_idr 4410726835499766444->-7403801395881320807 -7362989709235257683 chip.bam2ta 5974162946056046455 TAG-ALIGN -7362989709235257683->5974162946056046455 5974162946056046455->-4589437900418069577 5974162946056046455->-3499745045584235516 -5054248931219403126 chip.macs2_signal_track 5974162946056046455->-5054248931219403126 5974162946056046455->3616446002471519003 5974162946056046455->3754725100377204744 5974162946056046455->-7403801395881320807 5974162946056046455->-5106078121488436375 -89163025156127692 chip.filter -5255248552969670263 SAMstats QC -89163025156127692->-5255248552969670263 2432785573535438391 Filt/deduped BAM -89163025156127692->2432785573535438391 -2155904416942197265 LibCmplx QC -89163025156127692->-2155904416942197265 2432785573535438391->-7362989709235257683 -7574645917201713451 chip.jsd 2432785573535438391->-7574645917201713451 3925477839158187495 chip.align 3475274495438234487 SAMstats QC 3925477839158187495->3475274495438234487 128771247800493646 BAM 3925477839158187495->128771247800493646 128771247800493646->-89163025156127692 1996414927350028515 chip.xcor 7360347016350159845 XCOR Plot 1996414927350028515->7360347016350159845 -2463820505682265746 BW FC -5054248931219403126->-2463820505682265746 -153309905912138701 BW p-val -5054248931219403126->-153309905912138701 2442216822557790586 FASTQ R1 (1) 2442216822557790586->3925477839158187495 2442216822557790586->1996414927350028515 7947928538513788134 FASTQ R2 (1) 7947928538513788134->3925477839158187495 -4054938441147312441 chip.call_peak -7764352155266835936 Peak (bfilt) -4054938441147312441->-7764352155266835936 4715860816164068068 Peak -4054938441147312441->4715860816164068068 4715860816164068068->-9061141129811107097 4715860816164068068->7293456003269769862 4715860816164068068->3754725100377204744 4715860816164068068->-7403801395881320807 -2478596760061390208 chip.bam2ta 1058656883077510297 TAG-ALIGN -2478596760061390208->1058656883077510297 1058656883077510297->-4589437900418069577 1058656883077510297->-4054938441147312441 -8571445596576419902 chip.macs2_signal_track 1058656883077510297->-8571445596576419902 1058656883077510297->3616446002471519003 1058656883077510297->3754725100377204744 1058656883077510297->-7403801395881320807 1058656883077510297->-5106078121488436375 7871186026902848521 chip.filter -3328687227148417098 SAMstats QC 7871186026902848521->-3328687227148417098 -8532667852617206069 Filt/deduped BAM 7871186026902848521->-8532667852617206069 -5899727317267046783 LibCmplx QC 7871186026902848521->-5899727317267046783 -8532667852617206069->-2478596760061390208 -8532667852617206069->-7574645917201713451 5595490548979892133 chip.align 1800775027645760667 SAMstats QC 5595490548979892133->1800775027645760667 -3277590546937521811 BAM 5595490548979892133->-3277590546937521811 -3277590546937521811->7871186026902848521 4605765178179915646 chip.xcor 5664782671389280966 XCOR Plot 4605765178179915646->5664782671389280966 3872555111637927192 BW FC -8571445596576419902->3872555111637927192 8639557693131785732 BW p-val -8571445596576419902->8639557693131785732 2755396671408088883 FASTQ R1 (1) 2755396671408088883->5595490548979892133 2755396671408088883->4605765178179915646 -114596267449122550 FASTQ R2 (1) -114596267449122550->5595490548979892133 2624294071571484832 chip.pool_ta_ctl -9147397566211722270 TAG-ALIGN 2624294071571484832->-9147397566211722270 -9147397566211722270->1984105371973046450 -9147397566211722270->8783689538179278579 -9147397566211722270->-3499745045584235516 -9147397566211722270->-5054248931219403126 -9147397566211722270->-4054938441147312441 -9147397566211722270->-8571445596576419902 -9147397566211722270->3616446002471519003 -9147397566211722270->3754725100377204744 -9147397566211722270->-7403801395881320807 -9147397566211722270->-5106078121488436375 -8850195827319249921 chip.bam2ta_ctl 4932749634571129225 TAG-ALIGN -8850195827319249921->4932749634571129225 4932749634571129225->2624294071571484832 8393402307696743308 Filt/deduped BAM 8393402307696743308->-8850195827319249921 8393402307696743308->-7574645917201713451 -9018917103740925531 chip.bam2ta_ctl -7538761068009297540 TAG-ALIGN -9018917103740925531->-7538761068009297540 -7538761068009297540->2624294071571484832 -4499107365130601414 Filt/deduped BAM -4499107365130601414->-9018917103740925531 -4499107365130601414->-7574645917201713451 894025587082563447 chip.bam2ta_ctl 5799006500263873353 TAG-ALIGN 894025587082563447->5799006500263873353 5799006500263873353->2624294071571484832 -3421145458338957098 Filt/deduped BAM -3421145458338957098->894025587082563447 -3421145458338957098->-7574645917201713451 4623178320828564572 chip.bam2ta_ctl 4773192795162073629 TAG-ALIGN 4623178320828564572->4773192795162073629 4773192795162073629->2624294071571484832 7461672663870693754 Filt/deduped BAM 7461672663870693754->4623178320828564572 7461672663870693754->-7574645917201713451 -1180425999858092984 chip.bam2ta_ctl -1394698022006398999 TAG-ALIGN -1180425999858092984->-1394698022006398999 -1394698022006398999->2624294071571484832 3337007564567925715 Filt/deduped BAM 3337007564567925715->-1180425999858092984 3337007564567925715->-7574645917201713451 -924137099218434761 chip.bam2ta_ctl 648843003389779655 TAG-ALIGN -924137099218434761->648843003389779655 648843003389779655->2624294071571484832 -717130880450711339 Filt/deduped BAM -717130880450711339->-924137099218434761 -717130880450711339->-7574645917201713451 -4698472087158048362 chip.bam2ta_ctl -6116107863534959858 TAG-ALIGN -4698472087158048362->-6116107863534959858 -6116107863534959858->2624294071571484832 6586552869644898654 Filt/deduped BAM 6586552869644898654->-4698472087158048362 6586552869644898654->-7574645917201713451 -7864683767208617209 chip.bam2ta_ctl -5149310626511698652 TAG-ALIGN -7864683767208617209->-5149310626511698652 -5149310626511698652->2624294071571484832 -3932074762130546910 Filt/deduped BAM -3932074762130546910->-7864683767208617209 -3932074762130546910->-7574645917201713451 6186742580565304564 chip.bam2ta_ctl -8041159676436892603 TAG-ALIGN 6186742580565304564->-8041159676436892603 -8041159676436892603->2624294071571484832 -6965594501349630785 Filt/deduped BAM -6965594501349630785->6186742580565304564 -6965594501349630785->-7574645917201713451 763241455133415054 chip.bam2ta_ctl 4292942988997770789 TAG-ALIGN 763241455133415054->4292942988997770789 4292942988997770789->2624294071571484832 -1091384876488278430 Filt/deduped BAM -1091384876488278430->763241455133415054 -1091384876488278430->-7574645917201713451 6884362213402116893 chip.bam2ta_ctl -3598667122453055621 TAG-ALIGN 6884362213402116893->-3598667122453055621 -3598667122453055621->2624294071571484832 7772050653522330266 Filt/deduped BAM 7772050653522330266->6884362213402116893 7772050653522330266->-7574645917201713451 -1482654829824052258 chip.bam2ta_ctl 3090379213838469083 TAG-ALIGN -1482654829824052258->3090379213838469083 3090379213838469083->2624294071571484832 2973127495226733070 Filt/deduped BAM 2973127495226733070->-1482654829824052258 2973127495226733070->-7574645917201713451 704613300476558251 chip.bam2ta_ctl -154078844121655263 TAG-ALIGN 704613300476558251->-154078844121655263 -154078844121655263->2624294071571484832 2950534430424896084 Filt/deduped BAM 2950534430424896084->704613300476558251 2950534430424896084->-7574645917201713451 1329306061529168529 chip.bam2ta_ctl -943623361584025036 TAG-ALIGN 1329306061529168529->-943623361584025036 -943623361584025036->2624294071571484832 1598152343306560994 Filt/deduped BAM 1598152343306560994->1329306061529168529 1598152343306560994->-7574645917201713451 -8638111670154438668 chip.bam2ta_ctl 7166448672174175394 TAG-ALIGN -8638111670154438668->7166448672174175394 7166448672174175394->2624294071571484832 -4593216734302229456 Filt/deduped BAM -4593216734302229456->-8638111670154438668 -4593216734302229456->-7574645917201713451 -7242980692153940775 chip.bam2ta_ctl 4023268798188942891 TAG-ALIGN -7242980692153940775->4023268798188942891 4023268798188942891->2624294071571484832 7022853679705527353 Filt/deduped BAM 7022853679705527353->-7242980692153940775 7022853679705527353->-7574645917201713451 -5056958494652853075 chip.bam2ta_ctl 6149817714063804762 TAG-ALIGN -5056958494652853075->6149817714063804762 6149817714063804762->2624294071571484832 -876228562700736353 Filt/deduped BAM -876228562700736353->-5056958494652853075 -876228562700736353->-7574645917201713451 -194004855232218235 chip.bam2ta_ctl -8536371836026684223 TAG-ALIGN -194004855232218235->-8536371836026684223 -8536371836026684223->2624294071571484832 -747360855332131455 Filt/deduped BAM -747360855332131455->-194004855232218235 -747360855332131455->-7574645917201713451 7419734108846797177 chip.bam2ta_ctl 4794606089977576055 TAG-ALIGN 7419734108846797177->4794606089977576055 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chip.bam2ta_ctl 4156539029303170473 TAG-ALIGN -3440626581022938831->4156539029303170473 4156539029303170473->2624294071571484832 -6364638383855785560 Filt/deduped BAM -6364638383855785560->-3440626581022938831 -6364638383855785560->-7574645917201713451 4398008539253658000 chip.bam2ta_ctl 6601991088847988782 TAG-ALIGN 4398008539253658000->6601991088847988782 6601991088847988782->2624294071571484832 1671912982647016123 Filt/deduped BAM 1671912982647016123->4398008539253658000 1671912982647016123->-7574645917201713451 5108322416579767970 IDR Plot ppr 3616446002471519003->5108322416579767970 -3385404256546781819 IDR Peak ppr 3616446002471519003->-3385404256546781819 -3385404256546781819->-7403801395881320807 -5721329027892584075 IDR Plot rep1_vs_rep2 -9061141129811107097->-5721329027892584075 -3485707860020113103 IDR NPeak rep1_vs_rep2 -9061141129811107097->-3485707860020113103 -3485707860020113103->-7403801395881320807 -3944563972003845733 Overlap Peak rep1_vs_rep2 7293456003269769862->-3944563972003845733 -3944563972003845733->3754725100377204744 9162619380485415898 Overlap Peak optimal 3754725100377204744->9162619380485415898 1526368085055898693 Overlap reproducibility 3754725100377204744->1526368085055898693 -7167879461271391357 IDR Peak optimal -7403801395881320807->-7167879461271391357 -8120632216203525250 IDR reproducibility -7403801395881320807->-8120632216203525250 1693568467574750838 Overlap Peak ppr -5106078121488436375->1693568467574750838 1693568467574750838->3754725100377204744 -3832919633267428121 JSD Plot -7574645917201713451->-3832919633267428121

UCSC browser tracks

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