File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF429EZN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF429EZN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF429EZN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF429EZN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF429EZN.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF752NOE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF752NOE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF752NOE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF752NOE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF752NOE.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.558M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.558M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.558M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF429EZN.crop_101-2bp.nodup.pr1_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF429EZN.crop_101-2bp.nodup.pr1_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF429EZN.crop_101-2bp.nodup.pr1_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF429EZN.crop_101-2bp.nodup.pr1_x_ctl.pooled.281M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF429EZN.crop_101-2bp.nodup.pr2_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF429EZN.crop_101-2bp.nodup.pr2_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF429EZN.crop_101-2bp.nodup.pr2_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF429EZN.crop_101-2bp.nodup.pr2_x_ctl.pooled.281M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF752NOE.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF752NOE.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF752NOE.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF752NOE.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF752NOE.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF752NOE.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF752NOE.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF752NOE.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.558M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF429EZN.crop_101-2bp.nodup.pr1_x_ctl.pooled.281M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF429EZN.crop_101-2bp.nodup.pr2_x_ctl.pooled.281M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF429EZN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF429EZN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF429EZN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF429EZN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF429EZN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF429EZN.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF752NOE.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF752NOE.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF752NOE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF752NOE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF752NOE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF752NOE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF752NOE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF752NOE.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF429EZN.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/914f0b64-c9af-462a-b8eb-f6709d6c361a/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.558M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.558M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF429EZN.crop_101-2bp.nodup_x_ctl.pooled.281M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65b7a2da-d643-4c06-805b-2d37fa7d431b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF752NOE.crop_101-2bp.nodup_x_ctl.pooled.276M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3390989603822170441 chip.macs2_signal_track_pooled 4613720573976763712 BW FC 3390989603822170441->4613720573976763712 2243140927655436542 BW p-val 3390989603822170441->2243140927655436542 5022917013512173731 chip.call_peak_pooled -8821550354918616161 Peak (bfilt) 5022917013512173731->-8821550354918616161 -6231382434133203216 Peak 5022917013512173731->-6231382434133203216 -6599771487017955032 chip.idr_ppr -6231382434133203216->-6599771487017955032 3218029847518193632 chip.idr -6231382434133203216->3218029847518193632 -2621475992510714945 chip.overlap -6231382434133203216->-2621475992510714945 -7286629335113382293 chip.overlap_ppr -6231382434133203216->-7286629335113382293 -5554931586588479001 chip.pool_ta -7480338385457617787 TAG-ALIGN -5554931586588479001->-7480338385457617787 -7480338385457617787->3390989603822170441 -7480338385457617787->5022917013512173731 -7480338385457617787->-6599771487017955032 -7480338385457617787->3218029847518193632 -7480338385457617787->-2621475992510714945 -7480338385457617787->-7286629335113382293 -7803422743465850473 chip.call_peak 267035769811058963 Peak (bfilt) -7803422743465850473->267035769811058963 -154886448108636986 Peak -7803422743465850473->-154886448108636986 -154886448108636986->3218029847518193632 -154886448108636986->-2621475992510714945 -2238567758545575081 chip.reproducibility_overlap -154886448108636986->-2238567758545575081 4334183317304754313 chip.reproducibility_idr -154886448108636986->4334183317304754313 3802641913157784495 chip.bam2ta -1117671970308633327 TAG-ALIGN 3802641913157784495->-1117671970308633327 -1117671970308633327->-5554931586588479001 -1117671970308633327->-7803422743465850473 7394009366595949852 chip.macs2_signal_track -1117671970308633327->7394009366595949852 -1117671970308633327->-6599771487017955032 -1117671970308633327->-2238567758545575081 -1117671970308633327->4334183317304754313 -1117671970308633327->-7286629335113382293 8640138176203399062 chip.filter -6071263669244484843 SAMstats QC 8640138176203399062->-6071263669244484843 -2719964138348574815 Filt/deduped BAM 8640138176203399062->-2719964138348574815 -2257969250086855692 LibCmplx QC 8640138176203399062->-2257969250086855692 -2719964138348574815->3802641913157784495 55953779616104415 chip.jsd -2719964138348574815->55953779616104415 -5176540823632284609 chip.align 1044312633635257754 SAMstats QC -5176540823632284609->1044312633635257754 6578891851894500296 BAM -5176540823632284609->6578891851894500296 6578891851894500296->8640138176203399062 4595189992941578046 chip.xcor -2628846094532831711 XCOR Plot 4595189992941578046->-2628846094532831711 -8114784559421619547 BW FC 7394009366595949852->-8114784559421619547 6862132930756870849 BW p-val 7394009366595949852->6862132930756870849 -8956311893130067202 FASTQ R1 (1) -8956311893130067202->-5176540823632284609 -8956311893130067202->4595189992941578046 -6486639589101312413 FASTQ R2 (1) -6486639589101312413->-5176540823632284609 -5881674004746052107 chip.call_peak 9037404564831949351 Peak (bfilt) -5881674004746052107->9037404564831949351 1523355569889113684 Peak -5881674004746052107->1523355569889113684 1523355569889113684->3218029847518193632 1523355569889113684->-2621475992510714945 1523355569889113684->-2238567758545575081 1523355569889113684->4334183317304754313 3551941667321601662 chip.bam2ta -8519047201407608680 TAG-ALIGN 3551941667321601662->-8519047201407608680 -8519047201407608680->-5554931586588479001 -8519047201407608680->-5881674004746052107 5331208513004902004 chip.macs2_signal_track -8519047201407608680->5331208513004902004 -8519047201407608680->-6599771487017955032 -8519047201407608680->-2238567758545575081 -8519047201407608680->4334183317304754313 -8519047201407608680->-7286629335113382293 1737512702558091437 chip.filter -7434401637598517865 SAMstats QC 1737512702558091437->-7434401637598517865 1831987454165106448 Filt/deduped BAM 1737512702558091437->1831987454165106448 -93802092809973576 LibCmplx QC 1737512702558091437->-93802092809973576 1831987454165106448->3551941667321601662 1831987454165106448->55953779616104415 -8656378310806559593 chip.align -2673933131973939927 SAMstats QC -8656378310806559593->-2673933131973939927 8166166635774230409 BAM -8656378310806559593->8166166635774230409 8166166635774230409->1737512702558091437 -3396672533440064623 chip.xcor -4101838757262472599 XCOR Plot -3396672533440064623->-4101838757262472599 -4242510049226139761 BW FC 5331208513004902004->-4242510049226139761 -3127922432745776789 BW p-val 5331208513004902004->-3127922432745776789 -285599103564388024 FASTQ R1 (1) -285599103564388024->-8656378310806559593 -285599103564388024->-3396672533440064623 -1772769457912880430 FASTQ R2 (1) -1772769457912880430->-8656378310806559593 -70519911371598931 chip.pool_ta_ctl 2720887279530708375 TAG-ALIGN -70519911371598931->2720887279530708375 2720887279530708375->3390989603822170441 2720887279530708375->5022917013512173731 2720887279530708375->-7803422743465850473 2720887279530708375->7394009366595949852 2720887279530708375->-5881674004746052107 2720887279530708375->5331208513004902004 2720887279530708375->-6599771487017955032 2720887279530708375->-2238567758545575081 2720887279530708375->4334183317304754313 2720887279530708375->-7286629335113382293 -178238088531674599 chip.bam2ta_ctl 2920929075848758199 TAG-ALIGN -178238088531674599->2920929075848758199 2920929075848758199->-70519911371598931 753774724012865191 Filt/deduped BAM 753774724012865191->-178238088531674599 753774724012865191->55953779616104415 9202645391344598789 chip.bam2ta_ctl -2730753627644589177 TAG-ALIGN 9202645391344598789->-2730753627644589177 -2730753627644589177->-70519911371598931 -5080979526387972756 Filt/deduped BAM -5080979526387972756->9202645391344598789 -5080979526387972756->55953779616104415 -6444096486023418141 chip.bam2ta_ctl -4133880315610730585 TAG-ALIGN -6444096486023418141->-4133880315610730585 -4133880315610730585->-70519911371598931 1158654883022158011 Filt/deduped BAM 1158654883022158011->-6444096486023418141 1158654883022158011->55953779616104415 5231041553136100280 chip.bam2ta_ctl -1305808875239999616 TAG-ALIGN 5231041553136100280->-1305808875239999616 -1305808875239999616->-70519911371598931 -6982419868157075358 Filt/deduped BAM -6982419868157075358->5231041553136100280 -6982419868157075358->55953779616104415 -2308335701409667710 chip.bam2ta_ctl -3253856253776459047 TAG-ALIGN -2308335701409667710->-3253856253776459047 -3253856253776459047->-70519911371598931 2751591192879785982 Filt/deduped BAM 2751591192879785982->-2308335701409667710 2751591192879785982->55953779616104415 -6109109889917296880 chip.bam2ta_ctl 2842700282206913209 TAG-ALIGN -6109109889917296880->2842700282206913209 2842700282206913209->-70519911371598931 2901035723551880155 Filt/deduped BAM 2901035723551880155->-6109109889917296880 2901035723551880155->55953779616104415 -7190433166765791722 chip.bam2ta_ctl -3465631839471028267 TAG-ALIGN -7190433166765791722->-3465631839471028267 -3465631839471028267->-70519911371598931 5014794544461234028 Filt/deduped BAM 5014794544461234028->-7190433166765791722 5014794544461234028->55953779616104415 8013057210254131639 chip.bam2ta_ctl 7845243472448602938 TAG-ALIGN 8013057210254131639->7845243472448602938 7845243472448602938->-70519911371598931 -568603092852351401 Filt/deduped BAM -568603092852351401->8013057210254131639 -568603092852351401->55953779616104415 -5730273480954068725 chip.bam2ta_ctl -1162358227252382698 TAG-ALIGN -5730273480954068725->-1162358227252382698 -1162358227252382698->-70519911371598931 2205881042558000546 Filt/deduped BAM 2205881042558000546->-5730273480954068725 2205881042558000546->55953779616104415 6368655575001572733 chip.bam2ta_ctl 6949562626928224489 TAG-ALIGN 6368655575001572733->6949562626928224489 6949562626928224489->-70519911371598931 -7437639925263135446 Filt/deduped BAM -7437639925263135446->6368655575001572733 -7437639925263135446->55953779616104415 2244129715782947589 chip.bam2ta_ctl -2492272728022388608 TAG-ALIGN 2244129715782947589->-2492272728022388608 -2492272728022388608->-70519911371598931 5011573449642865332 Filt/deduped BAM 5011573449642865332->2244129715782947589 5011573449642865332->55953779616104415 -3950702548833355287 chip.bam2ta_ctl -5445844022735559884 TAG-ALIGN -3950702548833355287->-5445844022735559884 -5445844022735559884->-70519911371598931 9114653682280529879 Filt/deduped BAM 9114653682280529879->-3950702548833355287 9114653682280529879->55953779616104415 8387866347098022872 chip.bam2ta_ctl -1623118056470745670 TAG-ALIGN 8387866347098022872->-1623118056470745670 -1623118056470745670->-70519911371598931 6938152244816044465 Filt/deduped BAM 6938152244816044465->8387866347098022872 6938152244816044465->55953779616104415 -638241459700257617 chip.bam2ta_ctl -4248814157528369358 TAG-ALIGN -638241459700257617->-4248814157528369358 -4248814157528369358->-70519911371598931 -6086816650994673751 Filt/deduped BAM -6086816650994673751->-638241459700257617 -6086816650994673751->55953779616104415 1554371178281472653 chip.bam2ta_ctl -6031737082668826460 TAG-ALIGN 1554371178281472653->-6031737082668826460 -6031737082668826460->-70519911371598931 5538497928675466188 Filt/deduped BAM 5538497928675466188->1554371178281472653 5538497928675466188->55953779616104415 -2790668251760704866 chip.bam2ta_ctl 7847146829582408082 TAG-ALIGN -2790668251760704866->7847146829582408082 7847146829582408082->-70519911371598931 -6061482564861851486 Filt/deduped BAM -6061482564861851486->-2790668251760704866 -6061482564861851486->55953779616104415 177349086769489778 chip.bam2ta_ctl -4568389197368452662 TAG-ALIGN 177349086769489778->-4568389197368452662 -4568389197368452662->-70519911371598931 -7042704091743813541 Filt/deduped BAM -7042704091743813541->177349086769489778 -7042704091743813541->55953779616104415 -4832855311410101705 chip.bam2ta_ctl -526787166759747500 TAG-ALIGN -4832855311410101705->-526787166759747500 -526787166759747500->-70519911371598931 6123282562796353503 Filt/deduped BAM 6123282562796353503->-4832855311410101705 6123282562796353503->55953779616104415 1334342700657780804 chip.bam2ta_ctl 4878259690984052590 TAG-ALIGN 1334342700657780804->4878259690984052590 4878259690984052590->-70519911371598931 9071705039649214371 Filt/deduped BAM 9071705039649214371->1334342700657780804 9071705039649214371->55953779616104415 -2874843317049115593 chip.bam2ta_ctl 4383670420383342847 TAG-ALIGN -2874843317049115593->4383670420383342847 4383670420383342847->-70519911371598931 262012651093606576 Filt/deduped BAM 262012651093606576->-2874843317049115593 262012651093606576->55953779616104415 -1909207513935293205 chip.bam2ta_ctl -5557915154924867221 TAG-ALIGN -1909207513935293205->-5557915154924867221 -5557915154924867221->-70519911371598931 -1205803414024196715 Filt/deduped BAM -1205803414024196715->-1909207513935293205 -1205803414024196715->55953779616104415 1974378556519379348 chip.bam2ta_ctl 8246560179061729957 TAG-ALIGN 1974378556519379348->8246560179061729957 8246560179061729957->-70519911371598931 117981881250095803 Filt/deduped BAM 117981881250095803->1974378556519379348 117981881250095803->55953779616104415 5722389451277734115 chip.bam2ta_ctl 8793767062229723 TAG-ALIGN 5722389451277734115->8793767062229723 8793767062229723->-70519911371598931 6906083238938544027 Filt/deduped BAM 6906083238938544027->5722389451277734115 6906083238938544027->55953779616104415 1126749765048860783 chip.bam2ta_ctl -6073408409075120802 TAG-ALIGN 1126749765048860783->-6073408409075120802 -6073408409075120802->-70519911371598931 -277392667957527957 Filt/deduped BAM -277392667957527957->1126749765048860783 -277392667957527957->55953779616104415 -1364115143854615899 IDR Plot ppr -6599771487017955032->-1364115143854615899 7145668790356014496 IDR Peak ppr -6599771487017955032->7145668790356014496 7145668790356014496->4334183317304754313 -8548476444631013696 IDR Plot rep1_vs_rep2 3218029847518193632->-8548476444631013696 -356076627177575109 IDR NPeak rep1_vs_rep2 3218029847518193632->-356076627177575109 -356076627177575109->4334183317304754313 -3079261949168749271 Overlap Peak rep1_vs_rep2 -2621475992510714945->-3079261949168749271 -3079261949168749271->-2238567758545575081 1372686457784906927 Overlap Peak optimal -2238567758545575081->1372686457784906927 3920706159301469081 Overlap reproducibility -2238567758545575081->3920706159301469081 575719420278820256 IDR Peak optimal 4334183317304754313->575719420278820256 8124563382050751613 IDR reproducibility 4334183317304754313->8124563382050751613 -6931974120066783115 Overlap Peak ppr -7286629335113382293->-6931974120066783115 -6931974120066783115->-2238567758545575081 2315453735763185893 JSD Plot 55953779616104415->2315453735763185893

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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