File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF876PMY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF876PMY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF876PMY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF876PMY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF876PMY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF586BYR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF586BYR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586BYR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586BYR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF586BYR.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.483M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.483M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.483M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF876PMY.crop_101-2bp.nodup.pr1_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF876PMY.crop_101-2bp.nodup.pr1_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF876PMY.crop_101-2bp.nodup.pr1_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF876PMY.crop_101-2bp.nodup.pr1_x_ctl.pooled.223M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF876PMY.crop_101-2bp.nodup.pr2_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF876PMY.crop_101-2bp.nodup.pr2_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF876PMY.crop_101-2bp.nodup.pr2_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF876PMY.crop_101-2bp.nodup.pr2_x_ctl.pooled.223M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586BYR.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586BYR.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586BYR.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586BYR.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586BYR.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586BYR.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586BYR.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586BYR.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.483M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF876PMY.crop_101-2bp.nodup.pr1_x_ctl.pooled.223M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF876PMY.crop_101-2bp.nodup.pr2_x_ctl.pooled.223M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF876PMY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF876PMY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF876PMY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF876PMY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF876PMY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF876PMY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586BYR.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586BYR.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF586BYR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF586BYR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF586BYR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF586BYR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586BYR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586BYR.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF876PMY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/63cef0b8-de62-42b8-8cbb-8d29e106f4f5/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.483M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.483M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF876PMY.crop_101-2bp.nodup_x_ctl.pooled.223M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f7db2e7-694c-4379-baa8-26c2930a6b4a/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF586BYR.crop_101-2bp.nodup_x_ctl.pooled.259M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -7439368965300312375 chip.macs2_signal_track_pooled -1451677540496950314 BW FC -7439368965300312375->-1451677540496950314 -6148063317821710010 BW p-val -7439368965300312375->-6148063317821710010 7505181287402451458 chip.call_peak_pooled -387833431995171598 Peak (bfilt) 7505181287402451458->-387833431995171598 -537083288587326484 Peak 7505181287402451458->-537083288587326484 -6275326101909235556 chip.idr_ppr -537083288587326484->-6275326101909235556 982800741057117936 chip.idr -537083288587326484->982800741057117936 -4748264202487757372 chip.overlap -537083288587326484->-4748264202487757372 4698197537293790371 chip.overlap_ppr -537083288587326484->4698197537293790371 3448191631691085400 chip.pool_ta 2948688558224825581 TAG-ALIGN 3448191631691085400->2948688558224825581 2948688558224825581->-7439368965300312375 2948688558224825581->7505181287402451458 2948688558224825581->-6275326101909235556 2948688558224825581->982800741057117936 2948688558224825581->-4748264202487757372 2948688558224825581->4698197537293790371 8766818725523313278 chip.call_peak 7354848764692315001 Peak (bfilt) 8766818725523313278->7354848764692315001 -4764762816163473009 Peak 8766818725523313278->-4764762816163473009 -4764762816163473009->982800741057117936 -4764762816163473009->-4748264202487757372 7259549312732239234 chip.reproducibility_overlap -4764762816163473009->7259549312732239234 -2972733103196722369 chip.reproducibility_idr -4764762816163473009->-2972733103196722369 -6391030324705780858 chip.bam2ta 3359225612324718560 TAG-ALIGN -6391030324705780858->3359225612324718560 3359225612324718560->3448191631691085400 3359225612324718560->8766818725523313278 -3607303520052743752 chip.macs2_signal_track 3359225612324718560->-3607303520052743752 3359225612324718560->-6275326101909235556 3359225612324718560->7259549312732239234 3359225612324718560->-2972733103196722369 3359225612324718560->4698197537293790371 -2608151963358137094 chip.filter -3187778295620743037 SAMstats QC -2608151963358137094->-3187778295620743037 -3511306262747498998 Filt/deduped BAM -2608151963358137094->-3511306262747498998 2998887143761663525 LibCmplx QC -2608151963358137094->2998887143761663525 -3511306262747498998->-6391030324705780858 -6706051524145877519 chip.jsd -3511306262747498998->-6706051524145877519 -6957576507022652033 chip.align -3639982115134800783 SAMstats QC -6957576507022652033->-3639982115134800783 5415034833889610683 BAM -6957576507022652033->5415034833889610683 5415034833889610683->-2608151963358137094 6122822833689793905 chip.xcor -2585995886323358599 XCOR Plot 6122822833689793905->-2585995886323358599 3568653923429747972 BW FC -3607303520052743752->3568653923429747972 4884426669714758306 BW p-val -3607303520052743752->4884426669714758306 -8982409935225734063 FASTQ R1 (1) -8982409935225734063->-6957576507022652033 -8982409935225734063->6122822833689793905 3766694840205302868 FASTQ R2 (1) 3766694840205302868->-6957576507022652033 5081441659451382817 chip.call_peak 7657897951727836377 Peak (bfilt) 5081441659451382817->7657897951727836377 -2601160012017749683 Peak 5081441659451382817->-2601160012017749683 -2601160012017749683->982800741057117936 -2601160012017749683->-4748264202487757372 -2601160012017749683->7259549312732239234 -2601160012017749683->-2972733103196722369 -8293934160786442795 chip.bam2ta -4698313979026327390 TAG-ALIGN -8293934160786442795->-4698313979026327390 -4698313979026327390->3448191631691085400 -4698313979026327390->5081441659451382817 -6201960347147792193 chip.macs2_signal_track -4698313979026327390->-6201960347147792193 -4698313979026327390->-6275326101909235556 -4698313979026327390->7259549312732239234 -4698313979026327390->-2972733103196722369 -4698313979026327390->4698197537293790371 3006525832599707614 chip.filter 6621978744835963306 SAMstats QC 3006525832599707614->6621978744835963306 1245500347230509252 Filt/deduped BAM 3006525832599707614->1245500347230509252 -7964101655711810704 LibCmplx QC 3006525832599707614->-7964101655711810704 1245500347230509252->-8293934160786442795 1245500347230509252->-6706051524145877519 7236423895839950944 chip.align 4353976806129741078 SAMstats QC 7236423895839950944->4353976806129741078 -7301049443109284073 BAM 7236423895839950944->-7301049443109284073 -7301049443109284073->3006525832599707614 -4816992691881746450 chip.xcor -2004337262709044890 XCOR Plot -4816992691881746450->-2004337262709044890 -6795102644556977232 BW FC -6201960347147792193->-6795102644556977232 6930493054722738247 BW p-val -6201960347147792193->6930493054722738247 -5900974029947899892 FASTQ R1 (1) -5900974029947899892->7236423895839950944 -5900974029947899892->-4816992691881746450 -2938781677776795853 FASTQ R2 (1) -2938781677776795853->7236423895839950944 1656777329973086843 chip.pool_ta_ctl -4940078020450056854 TAG-ALIGN 1656777329973086843->-4940078020450056854 -4940078020450056854->-7439368965300312375 -4940078020450056854->7505181287402451458 -4940078020450056854->8766818725523313278 -4940078020450056854->-3607303520052743752 -4940078020450056854->5081441659451382817 -4940078020450056854->-6201960347147792193 -4940078020450056854->-6275326101909235556 -4940078020450056854->7259549312732239234 -4940078020450056854->-2972733103196722369 -4940078020450056854->4698197537293790371 3064067454767088140 chip.bam2ta_ctl -2854865537427292795 TAG-ALIGN 3064067454767088140->-2854865537427292795 -2854865537427292795->1656777329973086843 3604654839423780658 Filt/deduped BAM 3604654839423780658->3064067454767088140 3604654839423780658->-6706051524145877519 7469357988283147778 chip.bam2ta_ctl -6008598169112461499 TAG-ALIGN 7469357988283147778->-6008598169112461499 -6008598169112461499->1656777329973086843 1877460687520647475 Filt/deduped BAM 1877460687520647475->7469357988283147778 1877460687520647475->-6706051524145877519 -3549556179622345803 chip.bam2ta_ctl 2679235585506468546 TAG-ALIGN -3549556179622345803->2679235585506468546 2679235585506468546->1656777329973086843 -3747461384339266644 Filt/deduped BAM -3747461384339266644->-3549556179622345803 -3747461384339266644->-6706051524145877519 2414525565277662053 chip.bam2ta_ctl -6405137214706616657 TAG-ALIGN 2414525565277662053->-6405137214706616657 -6405137214706616657->1656777329973086843 -7766466120804073604 Filt/deduped BAM -7766466120804073604->2414525565277662053 -7766466120804073604->-6706051524145877519 3008234902012375705 chip.bam2ta_ctl 1335693055854405058 TAG-ALIGN 3008234902012375705->1335693055854405058 1335693055854405058->1656777329973086843 5070668413069049982 Filt/deduped BAM 5070668413069049982->3008234902012375705 5070668413069049982->-6706051524145877519 8085888256207658612 chip.bam2ta_ctl -6798345427509682220 TAG-ALIGN 8085888256207658612->-6798345427509682220 -6798345427509682220->1656777329973086843 -3546248485921461778 Filt/deduped BAM -3546248485921461778->8085888256207658612 -3546248485921461778->-6706051524145877519 -320886632468854049 chip.bam2ta_ctl 4761267388444939498 TAG-ALIGN -320886632468854049->4761267388444939498 4761267388444939498->1656777329973086843 -7311700624230517298 Filt/deduped BAM -7311700624230517298->-320886632468854049 -7311700624230517298->-6706051524145877519 4201068106212577511 chip.bam2ta_ctl -3389093974094665136 TAG-ALIGN 4201068106212577511->-3389093974094665136 -3389093974094665136->1656777329973086843 8846703978665088359 Filt/deduped BAM 8846703978665088359->4201068106212577511 8846703978665088359->-6706051524145877519 6004188038617858395 chip.bam2ta_ctl -7811888462283739013 TAG-ALIGN 6004188038617858395->-7811888462283739013 -7811888462283739013->1656777329973086843 -8096179551206141729 Filt/deduped BAM -8096179551206141729->6004188038617858395 -8096179551206141729->-6706051524145877519 2411847240130982868 chip.bam2ta_ctl 5814817558679142608 TAG-ALIGN 2411847240130982868->5814817558679142608 5814817558679142608->1656777329973086843 7347661783729180446 Filt/deduped BAM 7347661783729180446->2411847240130982868 7347661783729180446->-6706051524145877519 8210466397075340030 chip.bam2ta_ctl -5918337588254518646 TAG-ALIGN 8210466397075340030->-5918337588254518646 -5918337588254518646->1656777329973086843 7419955379700129231 Filt/deduped BAM 7419955379700129231->8210466397075340030 7419955379700129231->-6706051524145877519 2849991361641310026 chip.bam2ta_ctl -4786631929292117153 TAG-ALIGN 2849991361641310026->-4786631929292117153 -4786631929292117153->1656777329973086843 -740097604129507781 Filt/deduped BAM -740097604129507781->2849991361641310026 -740097604129507781->-6706051524145877519 -1789797350384637176 chip.bam2ta_ctl 5292066419167917626 TAG-ALIGN -1789797350384637176->5292066419167917626 5292066419167917626->1656777329973086843 2893080247056286719 Filt/deduped BAM 2893080247056286719->-1789797350384637176 2893080247056286719->-6706051524145877519 -3493629170891634480 chip.bam2ta_ctl 5808145695001055355 TAG-ALIGN -3493629170891634480->5808145695001055355 5808145695001055355->1656777329973086843 6437077831635680355 Filt/deduped BAM 6437077831635680355->-3493629170891634480 6437077831635680355->-6706051524145877519 7691478459133592591 chip.bam2ta_ctl -5544313201314355369 TAG-ALIGN 7691478459133592591->-5544313201314355369 -5544313201314355369->1656777329973086843 -3403531121607663675 Filt/deduped BAM -3403531121607663675->7691478459133592591 -3403531121607663675->-6706051524145877519 1675153793011139558 chip.bam2ta_ctl -36873917780586067 TAG-ALIGN 1675153793011139558->-36873917780586067 -36873917780586067->1656777329973086843 3050345831619101965 Filt/deduped BAM 3050345831619101965->1675153793011139558 3050345831619101965->-6706051524145877519 1433585939553195042 chip.bam2ta_ctl -2992365605573420328 TAG-ALIGN 1433585939553195042->-2992365605573420328 -2992365605573420328->1656777329973086843 -597873309934590157 Filt/deduped BAM -597873309934590157->1433585939553195042 -597873309934590157->-6706051524145877519 -5465643707367732217 chip.bam2ta_ctl 7083276777285426725 TAG-ALIGN -5465643707367732217->7083276777285426725 7083276777285426725->1656777329973086843 -5195119372695646910 Filt/deduped BAM -5195119372695646910->-5465643707367732217 -5195119372695646910->-6706051524145877519 4848338811523962935 chip.bam2ta_ctl 4272885990738012568 TAG-ALIGN 4848338811523962935->4272885990738012568 4272885990738012568->1656777329973086843 -8361777740795138392 Filt/deduped BAM -8361777740795138392->4848338811523962935 -8361777740795138392->-6706051524145877519 4030427026169522221 chip.bam2ta_ctl -2869189626880714734 TAG-ALIGN 4030427026169522221->-2869189626880714734 -2869189626880714734->1656777329973086843 3169729079356597415 Filt/deduped BAM 3169729079356597415->4030427026169522221 3169729079356597415->-6706051524145877519 -8263404517984434920 chip.bam2ta_ctl 6345110475680727311 TAG-ALIGN -8263404517984434920->6345110475680727311 6345110475680727311->1656777329973086843 -2504389591268239136 Filt/deduped BAM -2504389591268239136->-8263404517984434920 -2504389591268239136->-6706051524145877519 -6511579661860049634 chip.bam2ta_ctl -6484068852729246594 TAG-ALIGN -6511579661860049634->-6484068852729246594 -6484068852729246594->1656777329973086843 -8553313032984588026 Filt/deduped BAM -8553313032984588026->-6511579661860049634 -8553313032984588026->-6706051524145877519 1176320465373630392 chip.bam2ta_ctl 5901679909166701625 TAG-ALIGN 1176320465373630392->5901679909166701625 5901679909166701625->1656777329973086843 7484123699368565404 Filt/deduped BAM 7484123699368565404->1176320465373630392 7484123699368565404->-6706051524145877519 7848827255564744928 chip.bam2ta_ctl 8388078107795716821 TAG-ALIGN 7848827255564744928->8388078107795716821 8388078107795716821->1656777329973086843 4180205032054857351 Filt/deduped BAM 4180205032054857351->7848827255564744928 4180205032054857351->-6706051524145877519 9114008525857295589 IDR Plot ppr -6275326101909235556->9114008525857295589 8064201609312161370 IDR Peak ppr -6275326101909235556->8064201609312161370 8064201609312161370->-2972733103196722369 7481972808750316740 IDR Plot rep1_vs_rep2 982800741057117936->7481972808750316740 723458461418715092 IDR NPeak rep1_vs_rep2 982800741057117936->723458461418715092 723458461418715092->-2972733103196722369 8797363834176324335 Overlap Peak rep1_vs_rep2 -4748264202487757372->8797363834176324335 8797363834176324335->7259549312732239234 5256847870517265795 Overlap Peak optimal 7259549312732239234->5256847870517265795 1713236126016217222 Overlap reproducibility 7259549312732239234->1713236126016217222 1587629032369813972 IDR Peak optimal -2972733103196722369->1587629032369813972 -5322509335949399028 IDR reproducibility -2972733103196722369->-5322509335949399028 6931825669245432528 Overlap Peak ppr 4698197537293790371->6931825669245432528 6931825669245432528->7259549312732239234 2873288106768648659 JSD Plot -6706051524145877519->2873288106768648659

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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