File table

Expand all    Collapse all

Files	Path
Alignment
Control 1
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF916UAH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF916UAH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF916UAH.crop_101-2bp.nodup.bam
Raw BAM from aligner	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF916UAH.crop_101-2bp.bam
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF916UAH.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF017EAR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF017EAR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF017EAR.crop_101-2bp.nodup.bam
Raw BAM from aligner	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF017EAR.crop_101-2bp.bam
TAG-ALIGN	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF017EAR.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.567M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.567M.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.567M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.567M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF916UAH.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF916UAH.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF916UAH.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF916UAH.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF916UAH.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF916UAH.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF916UAH.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF916UAH.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF017EAR.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF017EAR.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF017EAR.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF017EAR.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF017EAR.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF017EAR.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF017EAR.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF017EAR.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.567M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.567M.300K.bfilt.frip.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.567M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF916UAH.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF916UAH.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.frip.qc
Cross-correlation Plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF916UAH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF916UAH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF916UAH.crop_101-2bp.dup.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.frip.qc
Library complexity QC for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF916UAH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF916UAH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF916UAH.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF017EAR.crop_101-2bp.nodup.pr1_x_ctl.pooled.299M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF017EAR.crop_101-2bp.nodup.pr2_x_ctl.pooled.299M.300K.bfilt.frip.qc
Cross-correlation Plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF017EAR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF017EAR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF017EAR.crop_101-2bp.dup.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.300K.bfilt.frip.qc
Library complexity QC for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF017EAR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF017EAR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAM	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF017EAR.crop_101-2bp.nodup.samstats.qc
Final HTML report	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON file	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plot	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF916UAH.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaks	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaks	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.567M.fc.signal.bigwig
MACS2 signal track (p-val)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.567M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.fc.signal.bigwig
MACS2 signal track (p-val)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.fc.signal.bigwig
MACS2 signal track (p-val)	gs://encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.pval.signal.bigwig

track type=bigWig name="MACS2 p-val (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.pval.signal.bigwig?Expires=1601341123&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=q3vYJwr6VAZB6imYqGZXGf40cZk0EtCqII7DEpOS0rJyUuoe3qwBAdVpbeiSaF3yBsDbmlsFznhFWHF4eOcM83Rck1aBjuaKiJ1UDptTryNBpIgj8IwugrqmBtxaI2PBsD6XH6B1tw0poi0givxQkw4l67GDq8XuthMJwCOzUX1zpQp7r%2FM9Yo0xbSxocYJZX3U1kje5H%2BAF1eKeODYPtnclBxBTPu3gVRJjla4JtF60J37TBIfHcRQN%2F2GsUZZMWzcM7RlL2tzEJNW7h76AmDg%2B4l5AzmS5F1lpQ7WTJiz1IMeNsf9uG581QP6bbZfDaXDe1Yg1WW%2Bm8VrJKsweEg%3D%3D"
track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.pval.signal.bigwig?Expires=1601341123&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=LeUV8ZBKgnVmvOpNsfRNn7QjoweXy2UduynzwZFV2kW9Mvse0cX7w1vsn6Rieecw5nIC9MnSDkre9QQjLQv8s9YxCvAd2bgEy0Ktxiw28LSxluqBLsdLL6Im%2FWvSYfJIsedyIl5TZT7TUlk38Us8BfAnSNJILrDafUc7UDKnCXO880oT3TnKYEV1rRDwI0K7M6Ai%2BlY3LFWJXFoA%2BDgUIf9rtpbKvz9v4gnz6GL%2BHmOrsJdVcUeOgPHIzyCXrnvHh2OsE2g8Hf7rbVdF2ukuwbV%2FHJF568hvkByA30m9qLEFOHvdCHZBFbnHaBpZqicaYzYxTPW%2F8DvFgnMqynLCnw%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF916UAH.crop_101-2bp.nodup_x_ctl.pooled.268M.fc.signal.bigwig?Expires=1601341124&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=NVyiRVxPWpcnIyz0ZikDowQ781p8HAA7HD02VZg%2BnLavSNvWuPZOFUqxByhbCm%2Bz4TFzrgCghqwfHbPCOlIEAaSO2a6FPGnOYuWpruDH1ttEdnvoV8ps61SEBMTg7qtrHp1RP5ytflphBQTivT6uuWx8XdAnmy52rBeAhYsu4qW9Nq0LN0oCUvPA0V%2Fzej%2F8B2BObuRhIWB249Pt%2BldFgIfVtkadfIOesnLPwKH9TFGu%2F3wag5Y%2FeRHGSi%2BP50O9VnGEsMvbOY%2BQhK8YrQeBHKUFbuHw13q7gAIcc7KoXkHUUVjiGYtmm3uHlIPP%2Fgb8W4%2BdnCt%2B%2FY1WCnvDjrWyAw%3D%3D"
track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF017EAR.crop_101-2bp.nodup_x_ctl.pooled.299M.fc.signal.bigwig?Expires=1601341124&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=5I4RlIt0w%2B%2B5jbywDEMn%2B6mq0NGSCc1Q2uwxo4OZQDA178GGY%2FLoBDJoanQ51lu60NG%2BLpeTL1N87%2F1KFd1r8C66TMCcVBG2s6hUIifj3n2Lf0uWO4bCGWcjhcofWPHNd36a1RdoGRKfE90rMvvNR7Aa1yWjTc5mSrsP4kl9C7MSyGnghtnUI86nYX0j2QNPPcbsUYZxchGtY4a%2F%2F5mMla5WWVnwI%2BqQUwRLIBdDIZROo%2F2DsdJWrLVvSJNoB5VSb3K9T2bGU9MlW78aIGh88osJ4NQQqofp%2FZAFEROFRZhHOsGzsQMeQsqq%2FUR6UZwN8%2Bvpb%2FSrbBasGjSugjqpsg%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.567M.pval.signal.bigwig?Expires=1601341124&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=I%2FyYzAIGiVZx1AUglWyT2t4MXE9cC1HAF%2BXLSIplHKOGJmX5XTRl1hGNlm7uDOtftDophSmMLwsq0FfNQUs5zpvIiR6Kx6CB2RdST3aKCAWSuMEkXrOeex5E0GE9PuKUCmYgHCx2u39nFvzJ7WMdvwHxreUIOcRSMq5thHpVzTnbGthnt%2FIcBfx9XlyWU5p5DjcearsFdK2vdZCARYM60vRUkTictepcUZJmYlg%2FKU1J8r80XtFKjGOGyf9%2B%2BTNUQT6GyBYkPHtd5K4fTeXxYFGouX187hoZ%2Fu3XR1DwQ7U7CJ4XSlK5qQDBCYglzfPREKQVxiKbrwIECb0KxSDmRQ%3D%3D"
track type=bigWig name="MACS2 fc (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.567M.fc.signal.bigwig?Expires=1601341124&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=lumzloEOdLatDzwr5DsTeOxnYWG1hjW6gp0VsTVg5miCsX5t%2BJEjZvgzG4MU7b8Q8fxAvVJEpHUWsKtIVAGcWeSpU2FgVjRmeXIgp8vLD5wKXtxTD0xtctw0K1cIHxjvIWQ1cqWJ4qsUOHtyKhv5fQonCDZR4EkSuHU%2BOHEOxzETrptQJva9PQguqLqZ%2FtzFrOUC8c%2FL9f3zFfqym1FvpUzlSibtTJSKnFmZUYGj5GKrNqdOxcCfZFkr%2B5TrGARW3dxB%2BKjd3oKUlDAl3trs8HPEts5F7dB5%2FPuSKUlJfI6XdK0XF1WUa%2BRHRvtxsJXQJCoTdBdb%2FtRrXpt0XO9Qrg%3D%3D"
track type=bigBed name="Optimal IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb?Expires=1601341131&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=pWEnEHHxOO1HHxf9BB7MZUoSmLfTn8OhiWJ834MBUrPMYDM2kyWZh19p3Kq0lnxp2iPNCClI6qd1hBhZE0xmYhzVqqn8vLzRiPZTe9UtjQ77X094CnIJ8bkL7BBB%2Byh7vZmLCPyCwpxdQvdu%2BKZ3W09f0uNhL425hsPTMA36v4UtFoaov6gov3jkbGOYzDxTgdceFZsQLpQDYRIlrWEovhf%2B2zVxkf0FGPjjcXplUDmSg%2BS5YkUJ2D%2B4CjyoqSPy%2FFHPAX2lB3xksrYGYOGD5QTi0KoyYwuBzdIhxIsyVbpTRMIEn8kAfIloYl7UmP2n%2F%2FbXFU150YzebJBEN6Rzqg%3D%3D"
track type=bigBed name="Conservative IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb?Expires=1601341132&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=iLOhM%2F%2Fpv8TbE8xD9C5v5f%2FpIqB7U30%2FNlPaLFUl2I0Pep%2FApjp2rZKM4vNzpx3aQzCe4GT6MRuXpD4S2qWPx0kjtHrGTj%2BZ%2BwpaHejiBPrxs26JeTaCza4aBnMp96JVoE0cNQSsNEsbFBLZCuR%2Bnhbk0RdT2Q58hrAjLPaBf%2F%2FdSBpbXsC2%2BjCqofabx24ncoaBwj2hUmB6wdaEBuO%2Fdftw24F9FljH1BFICJzZPFpU4ToSwaQ0rtp%2B06wvue6TKceV%2B8GFRQvfSoevNe2JtrLbTzTwS9BjVDFiWJdb1Q7xpKTgfNsJp1DcJ28Qs250U%2Faf13D2336EQKYEd3I7mQ%3D%3D"
track type=bigBed name="Optimal overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb?Expires=1601341132&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=6bICn%2BXv1sCRgBt0Nomc4pYSLsvlggQZhWoktuDaph%2FnXslF1d5dkY14cvF4aGBpgJx65QNWxTucIMMhWQwRwsjPgA2PuTtVDD0hrOAk90%2Bi%2B72KaTvmq3pStgRgDdHRE1zcVAW9uzJTCZ58yXQNsIUriAh9KfS8owHibSm25fj%2B0MiXSJlZfjznA6afPKQSpXVFhnD7FLpoNwDBGsYEzrApc01LjgTZjgtWnJA3xodKH36unhKI8wNuuwNCGDMyl6VfG%2Bhdf3i0s7SPqoK7f3wR3zo%2By1S1kpgf9aTjEvP3yOMjOpPakYWm3jMTeZ5wmqZxOWgtvHDd0euyaAlJBA%3D%3D"
track type=bigBed name="Conservative overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d461f4e4-ec8b-4c2a-a9ab-5973f88f8fb0/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb?Expires=1601341133&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=vzQ56uXWiSEfJKeVbswfrtjAASnGOv%2BpEHEFfQedm1bC9k9asvReZYUbF%2F1v1a0kzPe6rKADoWE71hOpXKDHh%2Fg6R%2FlyrF%2FnAsN4jNaItA8qW1TJKecHozDZ5sIdEtEWk5FVNdvSb2YaD4IQ6uJ7Y6ohII%2FByVFYjaZ9swYa1mOZIIn1YTa71AyWxXmpXnUz7ZaSa4VFap%2B8FHvo2PfpRjmbVrJ9x6t17kpGjcg5WGyi9FkMq34X7Ce5vnAJo0nJ8IeOvvKhWC%2Fa4ByMSJT1vWsxKVR63okkj54bnXF96xA7Y2LISpIGuujNPyM1kx8M5lXaHU9q%2Bi%2BNR54tHWVAxA%3D%3D"