File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF322OHR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF322OHR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF322OHR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF322OHR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF322OHR.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF014DZB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF014DZB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF014DZB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF014DZB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF014DZB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.506M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.506M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.506M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.506M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.506M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.506M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.506M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF322OHR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF322OHR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF322OHR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF322OHR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF322OHR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF322OHR.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF014DZB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF014DZB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF014DZB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF014DZB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF014DZB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF014DZB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF322OHR.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.506M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.506M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2701575979196963860 chip.macs2_signal_track_pooled 3016453785253523918 BW FC 2701575979196963860->3016453785253523918 -1194608409647569137 BW p-val 2701575979196963860->-1194608409647569137 7640330745513072214 chip.call_peak_pooled 2100759204752604999 Peak (bfilt) 7640330745513072214->2100759204752604999 844374174003506979 Peak 7640330745513072214->844374174003506979 3945419500509494945 chip.idr_ppr 844374174003506979->3945419500509494945 3707749417971738572 chip.idr 844374174003506979->3707749417971738572 -5125136916707645538 chip.overlap 844374174003506979->-5125136916707645538 -4942456429062605235 chip.overlap_ppr 844374174003506979->-4942456429062605235 -1498260001506277333 chip.pool_ta 6244653874391581204 TAG-ALIGN -1498260001506277333->6244653874391581204 6244653874391581204->2701575979196963860 6244653874391581204->7640330745513072214 6244653874391581204->3945419500509494945 6244653874391581204->3707749417971738572 6244653874391581204->-5125136916707645538 6244653874391581204->-4942456429062605235 -6313648709782963097 chip.call_peak -3523912140260119238 Peak (bfilt) -6313648709782963097->-3523912140260119238 1537739086526033512 Peak -6313648709782963097->1537739086526033512 1537739086526033512->3707749417971738572 1537739086526033512->-5125136916707645538 -7668529566025282356 chip.reproducibility_overlap 1537739086526033512->-7668529566025282356 -3769309712902239648 chip.reproducibility_idr 1537739086526033512->-3769309712902239648 7191367462712418735 chip.bam2ta -747316574667534919 TAG-ALIGN 7191367462712418735->-747316574667534919 -747316574667534919->-1498260001506277333 -747316574667534919->-6313648709782963097 -6490279765273373784 chip.macs2_signal_track -747316574667534919->-6490279765273373784 -747316574667534919->3945419500509494945 -747316574667534919->-7668529566025282356 -747316574667534919->-3769309712902239648 -747316574667534919->-4942456429062605235 -3938980742945025232 chip.filter 863697148568618045 SAMstats QC -3938980742945025232->863697148568618045 -6884726342126906815 Filt/deduped BAM -3938980742945025232->-6884726342126906815 6646102228446083665 LibCmplx QC -3938980742945025232->6646102228446083665 -6884726342126906815->7191367462712418735 2441641038352449589 chip.jsd -6884726342126906815->2441641038352449589 1315120747167306966 chip.jsd -6884726342126906815->1315120747167306966 -4854049460274185973 chip.align 1569652866035046295 SAMstats QC -4854049460274185973->1569652866035046295 -2564672419794393339 BAM -4854049460274185973->-2564672419794393339 -2564672419794393339->-3938980742945025232 8463474442783610139 chip.xcor -5438807050737241398 XCOR Plot 8463474442783610139->-5438807050737241398 -2868888074131819973 BW FC -6490279765273373784->-2868888074131819973 2705019134214514481 BW p-val -6490279765273373784->2705019134214514481 -2820466371034442387 FASTQ R1 (1) -2820466371034442387->-4854049460274185973 -2820466371034442387->8463474442783610139 2317390256041939619 FASTQ R2 (1) 2317390256041939619->-4854049460274185973 1284692945382312800 chip.call_peak -6390797603416794576 Peak (bfilt) 1284692945382312800->-6390797603416794576 3841737919576621234 Peak 1284692945382312800->3841737919576621234 3841737919576621234->3707749417971738572 3841737919576621234->-5125136916707645538 3841737919576621234->-7668529566025282356 3841737919576621234->-3769309712902239648 -2058208494953946758 chip.bam2ta -6720920184506367061 TAG-ALIGN -2058208494953946758->-6720920184506367061 -6720920184506367061->-1498260001506277333 -6720920184506367061->1284692945382312800 -1674338574881523799 chip.macs2_signal_track -6720920184506367061->-1674338574881523799 -6720920184506367061->3945419500509494945 -6720920184506367061->-7668529566025282356 -6720920184506367061->-3769309712902239648 -6720920184506367061->-4942456429062605235 515501437183738307 chip.filter -3847471559979413475 SAMstats QC 515501437183738307->-3847471559979413475 1895621140839093761 Filt/deduped BAM 515501437183738307->1895621140839093761 3157331377725554772 LibCmplx QC 515501437183738307->3157331377725554772 1895621140839093761->-2058208494953946758 1895621140839093761->2441641038352449589 1895621140839093761->1315120747167306966 -4105163792759434653 chip.align -797907395867575262 SAMstats QC -4105163792759434653->-797907395867575262 8403039337101742891 BAM -4105163792759434653->8403039337101742891 8403039337101742891->515501437183738307 116319084543841859 chip.xcor -7011342371293465293 XCOR Plot 116319084543841859->-7011342371293465293 -5875304367812440673 BW FC -1674338574881523799->-5875304367812440673 -1571439964734707225 BW p-val -1674338574881523799->-1571439964734707225 6565045744949106234 FASTQ R1 (1) 6565045744949106234->-4105163792759434653 6565045744949106234->116319084543841859 2363736454528041559 FASTQ R2 (1) 2363736454528041559->-4105163792759434653 2384391396989355926 chip.pool_ta_ctl 2705512468023825120 TAG-ALIGN 2384391396989355926->2705512468023825120 2705512468023825120->2701575979196963860 2705512468023825120->7640330745513072214 2705512468023825120->-6313648709782963097 2705512468023825120->-6490279765273373784 2705512468023825120->1284692945382312800 2705512468023825120->-1674338574881523799 2705512468023825120->3945419500509494945 2705512468023825120->-7668529566025282356 2705512468023825120->-3769309712902239648 2705512468023825120->-4942456429062605235 631144093661626375 chip.bam2ta_ctl -454245959828406558 TAG-ALIGN 631144093661626375->-454245959828406558 -454245959828406558->2384391396989355926 -334039063679610168 Filt/deduped BAM -334039063679610168->631144093661626375 -334039063679610168->2441641038352449589 -334039063679610168->1315120747167306966 8625188823108932192 chip.bam2ta_ctl -8362779630822734375 TAG-ALIGN 8625188823108932192->-8362779630822734375 -8362779630822734375->2384391396989355926 8000297746880090601 Filt/deduped BAM 8000297746880090601->8625188823108932192 8000297746880090601->2441641038352449589 8000297746880090601->1315120747167306966 8345891877166167394 chip.bam2ta_ctl -8782394035044488704 TAG-ALIGN 8345891877166167394->-8782394035044488704 -8782394035044488704->2384391396989355926 3686613849048191037 Filt/deduped BAM 3686613849048191037->8345891877166167394 3686613849048191037->2441641038352449589 3686613849048191037->1315120747167306966 -5009146790520807499 chip.bam2ta_ctl -1432886493193510648 TAG-ALIGN -5009146790520807499->-1432886493193510648 -1432886493193510648->2384391396989355926 -1933028659608004887 Filt/deduped BAM -1933028659608004887->-5009146790520807499 -1933028659608004887->2441641038352449589 -1933028659608004887->1315120747167306966 -3032374060780768410 chip.bam2ta_ctl -6169053913072633344 TAG-ALIGN -3032374060780768410->-6169053913072633344 -6169053913072633344->2384391396989355926 -41923513844261613 Filt/deduped BAM -41923513844261613->-3032374060780768410 -41923513844261613->2441641038352449589 -41923513844261613->1315120747167306966 -8125429629825828804 chip.bam2ta_ctl 6331833945128458896 TAG-ALIGN -8125429629825828804->6331833945128458896 6331833945128458896->2384391396989355926 -4324682439860255334 Filt/deduped BAM -4324682439860255334->-8125429629825828804 -4324682439860255334->2441641038352449589 -4324682439860255334->1315120747167306966 -1689818625943794942 chip.bam2ta_ctl -5529653301701958072 TAG-ALIGN -1689818625943794942->-5529653301701958072 -5529653301701958072->2384391396989355926 -6188447015566441335 Filt/deduped BAM -6188447015566441335->-1689818625943794942 -6188447015566441335->2441641038352449589 -6188447015566441335->1315120747167306966 5494875632215644121 chip.bam2ta_ctl 7885751246659964356 TAG-ALIGN 5494875632215644121->7885751246659964356 7885751246659964356->2384391396989355926 3754792249254743237 Filt/deduped BAM 3754792249254743237->5494875632215644121 3754792249254743237->2441641038352449589 3754792249254743237->1315120747167306966 7302253332019985160 chip.bam2ta_ctl 2375390656450417350 TAG-ALIGN 7302253332019985160->2375390656450417350 2375390656450417350->2384391396989355926 -6427458833317292129 Filt/deduped BAM -6427458833317292129->7302253332019985160 -6427458833317292129->2441641038352449589 -6427458833317292129->1315120747167306966 -3925445543705602591 chip.bam2ta_ctl 2506842676499613104 TAG-ALIGN -3925445543705602591->2506842676499613104 2506842676499613104->2384391396989355926 2737870668258293795 Filt/deduped BAM 2737870668258293795->-3925445543705602591 2737870668258293795->2441641038352449589 2737870668258293795->1315120747167306966 -3442852968106991576 chip.bam2ta_ctl -1393497643390488098 TAG-ALIGN -3442852968106991576->-1393497643390488098 -1393497643390488098->2384391396989355926 1038088689253169905 Filt/deduped BAM 1038088689253169905->-3442852968106991576 1038088689253169905->2441641038352449589 1038088689253169905->1315120747167306966 4595715021529914510 chip.bam2ta_ctl 8542711764802042511 TAG-ALIGN 4595715021529914510->8542711764802042511 8542711764802042511->2384391396989355926 -5013368557386273897 Filt/deduped BAM -5013368557386273897->4595715021529914510 -5013368557386273897->2441641038352449589 -5013368557386273897->1315120747167306966 4372469205971895597 chip.bam2ta_ctl 5314630052385966235 TAG-ALIGN 4372469205971895597->5314630052385966235 5314630052385966235->2384391396989355926 7494809422590909141 Filt/deduped BAM 7494809422590909141->4372469205971895597 7494809422590909141->2441641038352449589 7494809422590909141->1315120747167306966 -2008611616576030527 chip.bam2ta_ctl 4911575560724332038 TAG-ALIGN -2008611616576030527->4911575560724332038 4911575560724332038->2384391396989355926 7553995366644009269 Filt/deduped BAM 7553995366644009269->-2008611616576030527 7553995366644009269->2441641038352449589 7553995366644009269->1315120747167306966 3220995678553529443 chip.bam2ta_ctl -3024113906863446385 TAG-ALIGN 3220995678553529443->-3024113906863446385 -3024113906863446385->2384391396989355926 7908350654108243289 Filt/deduped BAM 7908350654108243289->3220995678553529443 7908350654108243289->2441641038352449589 7908350654108243289->1315120747167306966 -5063473361122675618 chip.bam2ta_ctl -1798481427024576441 TAG-ALIGN -5063473361122675618->-1798481427024576441 -1798481427024576441->2384391396989355926 -4995818584321932317 Filt/deduped BAM -4995818584321932317->-5063473361122675618 -4995818584321932317->2441641038352449589 -4995818584321932317->1315120747167306966 -1444934675222505313 chip.bam2ta_ctl 5974057038984916016 TAG-ALIGN -1444934675222505313->5974057038984916016 5974057038984916016->2384391396989355926 -7926224450398957078 Filt/deduped BAM -7926224450398957078->-1444934675222505313 -7926224450398957078->2441641038352449589 -7926224450398957078->1315120747167306966 -632713247835919797 chip.bam2ta_ctl 2640112827322183865 TAG-ALIGN -632713247835919797->2640112827322183865 2640112827322183865->2384391396989355926 -177618707867960350 Filt/deduped BAM -177618707867960350->-632713247835919797 -177618707867960350->2441641038352449589 -177618707867960350->1315120747167306966 -9157899735683140827 chip.bam2ta_ctl 6950923323547122087 TAG-ALIGN -9157899735683140827->6950923323547122087 6950923323547122087->2384391396989355926 -8800487904030220629 Filt/deduped BAM -8800487904030220629->-9157899735683140827 -8800487904030220629->2441641038352449589 -8800487904030220629->1315120747167306966 8525849866155290535 chip.bam2ta_ctl 3851226827976346746 TAG-ALIGN 8525849866155290535->3851226827976346746 3851226827976346746->2384391396989355926 -5914359975151761747 Filt/deduped BAM -5914359975151761747->8525849866155290535 -5914359975151761747->2441641038352449589 -5914359975151761747->1315120747167306966 -4415075681294969710 chip.bam2ta_ctl -3655254741025953658 TAG-ALIGN -4415075681294969710->-3655254741025953658 -3655254741025953658->2384391396989355926 -5837951683982132675 Filt/deduped BAM -5837951683982132675->-4415075681294969710 -5837951683982132675->2441641038352449589 -5837951683982132675->1315120747167306966 -2643352284627711594 chip.bam2ta_ctl -1114859320313128173 TAG-ALIGN -2643352284627711594->-1114859320313128173 -1114859320313128173->2384391396989355926 3756576446843312457 Filt/deduped BAM 3756576446843312457->-2643352284627711594 3756576446843312457->2441641038352449589 3756576446843312457->1315120747167306966 8258484446771843524 chip.bam2ta_ctl 5346012927679844199 TAG-ALIGN 8258484446771843524->5346012927679844199 5346012927679844199->2384391396989355926 8576690427503847494 Filt/deduped BAM 8576690427503847494->8258484446771843524 8576690427503847494->2441641038352449589 8576690427503847494->1315120747167306966 -2239507634970223855 chip.bam2ta_ctl -5726272434922518618 TAG-ALIGN -2239507634970223855->-5726272434922518618 -5726272434922518618->2384391396989355926 1903899845829668171 Filt/deduped BAM 1903899845829668171->-2239507634970223855 1903899845829668171->2441641038352449589 1903899845829668171->1315120747167306966 -37210068758796402 IDR Plot ppr 3945419500509494945->-37210068758796402 2602627055375196498 IDR Peak ppr 3945419500509494945->2602627055375196498 2602627055375196498->-3769309712902239648 101679414571307743 IDR Plot rep1_vs_rep2 3707749417971738572->101679414571307743 -2631323221985322595 IDR NPeak rep1_vs_rep2 3707749417971738572->-2631323221985322595 -2631323221985322595->-3769309712902239648 -7341700898120527824 Overlap Peak rep1_vs_rep2 -5125136916707645538->-7341700898120527824 -7341700898120527824->-7668529566025282356 -5759600187108588052 Overlap Peak optimal -7668529566025282356->-5759600187108588052 -4400441454998499857 Overlap reproducibility -7668529566025282356->-4400441454998499857 5342830460305037737 IDR Peak optimal -3769309712902239648->5342830460305037737 -370740125956282978 IDR reproducibility -3769309712902239648->-370740125956282978 5447717755448554037 Overlap Peak ppr -4942456429062605235->5447717755448554037 5447717755448554037->-7668529566025282356 -1100071965540649125 JSD Plot 2441641038352449589->-1100071965540649125 1315120747167306966->-1100071965540649125

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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