File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF322OHR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF322OHR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF322OHR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF322OHR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF322OHR.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF014DZB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF014DZB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF014DZB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF014DZB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF014DZB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.506M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.506M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.506M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.506M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF322OHR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF322OHR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF322OHR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF322OHR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF322OHR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF322OHR.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.218M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.218M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF014DZB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF014DZB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF014DZB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF014DZB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF014DZB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF014DZB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF322OHR.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/51147c0b-fcca-47d0-bd77-6f6442ef4d9c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.506M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.506M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF322OHR.crop_101-2bp.nodup_x_ctl.pooled.287M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d77045d9-6f13-41f0-aad6-c13558feeb0b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF014DZB.crop_101-2bp.nodup_x_ctl.pooled.218M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 8516894705381780804 chip.macs2_signal_track_pooled 1176550919164179845 BW FC 8516894705381780804->1176550919164179845 1024597691947281137 BW p-val 8516894705381780804->1024597691947281137 -2844926552381668882 chip.call_peak_pooled -7730522366968777408 Peak (bfilt) -2844926552381668882->-7730522366968777408 8541531873137791468 Peak -2844926552381668882->8541531873137791468 1348018438258576305 chip.idr_ppr 8541531873137791468->1348018438258576305 4555359924925519573 chip.idr 8541531873137791468->4555359924925519573 6575332828644793433 chip.overlap 8541531873137791468->6575332828644793433 -4293117933877023392 chip.overlap_ppr 8541531873137791468->-4293117933877023392 -8125215879034169749 chip.pool_ta -731034894479468058 TAG-ALIGN -8125215879034169749->-731034894479468058 -731034894479468058->8516894705381780804 -731034894479468058->-2844926552381668882 -731034894479468058->1348018438258576305 -731034894479468058->4555359924925519573 -731034894479468058->6575332828644793433 -731034894479468058->-4293117933877023392 9137773897928563703 chip.call_peak 7337254052785608316 Peak (bfilt) 9137773897928563703->7337254052785608316 8005318100442038071 Peak 9137773897928563703->8005318100442038071 8005318100442038071->4555359924925519573 8005318100442038071->6575332828644793433 -1843517748047137402 chip.reproducibility_overlap 8005318100442038071->-1843517748047137402 -2035605581250029573 chip.reproducibility_idr 8005318100442038071->-2035605581250029573 8241494561099180549 chip.bam2ta 3625031048174734554 TAG-ALIGN 8241494561099180549->3625031048174734554 3625031048174734554->-8125215879034169749 3625031048174734554->9137773897928563703 -9093997985186468106 chip.macs2_signal_track 3625031048174734554->-9093997985186468106 3625031048174734554->1348018438258576305 3625031048174734554->-1843517748047137402 3625031048174734554->-2035605581250029573 3625031048174734554->-4293117933877023392 3514657902876085828 chip.filter -1381855412776867818 SAMstats QC 3514657902876085828->-1381855412776867818 -5428151062084073581 Filt/deduped BAM 3514657902876085828->-5428151062084073581 -2564694674100945133 LibCmplx QC 3514657902876085828->-2564694674100945133 -5428151062084073581->8241494561099180549 -5871163930219061399 chip.jsd -5428151062084073581->-5871163930219061399 -7143840857864068416 chip.align -6137367951785347305 SAMstats QC -7143840857864068416->-6137367951785347305 997445566174143465 BAM -7143840857864068416->997445566174143465 997445566174143465->3514657902876085828 -3076950853704608574 chip.xcor -2876945494484656015 XCOR Plot -3076950853704608574->-2876945494484656015 98044421159545346 BW FC -9093997985186468106->98044421159545346 7841900287529644 BW p-val -9093997985186468106->7841900287529644 -9104020175999550822 FASTQ R1 (1) -9104020175999550822->-7143840857864068416 -9104020175999550822->-3076950853704608574 -4057139607064109343 FASTQ R2 (1) -4057139607064109343->-7143840857864068416 1771174848136159243 chip.call_peak -8567305348255661679 Peak (bfilt) 1771174848136159243->-8567305348255661679 -1516724342052014759 Peak 1771174848136159243->-1516724342052014759 -1516724342052014759->4555359924925519573 -1516724342052014759->6575332828644793433 -1516724342052014759->-1843517748047137402 -1516724342052014759->-2035605581250029573 2936952400677670497 chip.bam2ta 8805073638547493633 TAG-ALIGN 2936952400677670497->8805073638547493633 8805073638547493633->-8125215879034169749 8805073638547493633->1771174848136159243 -7282972477956094548 chip.macs2_signal_track 8805073638547493633->-7282972477956094548 8805073638547493633->1348018438258576305 8805073638547493633->-1843517748047137402 8805073638547493633->-2035605581250029573 8805073638547493633->-4293117933877023392 7295580805526851700 chip.filter 6250592870477428944 SAMstats QC 7295580805526851700->6250592870477428944 -4347391027396096315 Filt/deduped BAM 7295580805526851700->-4347391027396096315 509978968408729537 LibCmplx QC 7295580805526851700->509978968408729537 -4347391027396096315->2936952400677670497 -4347391027396096315->-5871163930219061399 -178033254542543941 chip.align 5845897091991747440 SAMstats QC -178033254542543941->5845897091991747440 4982480338349354075 BAM -178033254542543941->4982480338349354075 4982480338349354075->7295580805526851700 -8219884337598566055 chip.xcor 9038447290630436340 XCOR Plot -8219884337598566055->9038447290630436340 -8250728718122508327 BW FC -7282972477956094548->-8250728718122508327 -3254580865497239373 BW p-val -7282972477956094548->-3254580865497239373 2660728302303285767 FASTQ R1 (1) 2660728302303285767->-178033254542543941 2660728302303285767->-8219884337598566055 -1486154936046272143 FASTQ R2 (1) -1486154936046272143->-178033254542543941 -1276915852228579675 chip.pool_ta_ctl 6571194478027015780 TAG-ALIGN -1276915852228579675->6571194478027015780 6571194478027015780->8516894705381780804 6571194478027015780->-2844926552381668882 6571194478027015780->9137773897928563703 6571194478027015780->-9093997985186468106 6571194478027015780->1771174848136159243 6571194478027015780->-7282972477956094548 6571194478027015780->1348018438258576305 6571194478027015780->-1843517748047137402 6571194478027015780->-2035605581250029573 6571194478027015780->-4293117933877023392 3374678477342315906 chip.bam2ta_ctl 8604238362653027858 TAG-ALIGN 3374678477342315906->8604238362653027858 8604238362653027858->-1276915852228579675 -6084355757384616338 Filt/deduped BAM -6084355757384616338->3374678477342315906 -6084355757384616338->-5871163930219061399 332931582518801556 chip.bam2ta_ctl -2685314820495993682 TAG-ALIGN 332931582518801556->-2685314820495993682 -2685314820495993682->-1276915852228579675 8354877866035464363 Filt/deduped BAM 8354877866035464363->332931582518801556 8354877866035464363->-5871163930219061399 -6411658483457313035 chip.bam2ta_ctl 9200793990807719156 TAG-ALIGN -6411658483457313035->9200793990807719156 9200793990807719156->-1276915852228579675 -2421234516667808995 Filt/deduped BAM -2421234516667808995->-6411658483457313035 -2421234516667808995->-5871163930219061399 1344507802250511163 chip.bam2ta_ctl -5855980994822882952 TAG-ALIGN 1344507802250511163->-5855980994822882952 -5855980994822882952->-1276915852228579675 488554307416209560 Filt/deduped BAM 488554307416209560->1344507802250511163 488554307416209560->-5871163930219061399 -1924419018394993763 chip.bam2ta_ctl 5502547494784916082 TAG-ALIGN -1924419018394993763->5502547494784916082 5502547494784916082->-1276915852228579675 -9012220756263354823 Filt/deduped BAM -9012220756263354823->-1924419018394993763 -9012220756263354823->-5871163930219061399 6903525765956884174 chip.bam2ta_ctl -4285238658631988923 TAG-ALIGN 6903525765956884174->-4285238658631988923 -4285238658631988923->-1276915852228579675 -5748049708111354976 Filt/deduped BAM -5748049708111354976->6903525765956884174 -5748049708111354976->-5871163930219061399 -8054593485534115208 chip.bam2ta_ctl -5955046307609040634 TAG-ALIGN -8054593485534115208->-5955046307609040634 -5955046307609040634->-1276915852228579675 2788253123199974470 Filt/deduped BAM 2788253123199974470->-8054593485534115208 2788253123199974470->-5871163930219061399 2877423491752910817 chip.bam2ta_ctl 8234141925987468406 TAG-ALIGN 2877423491752910817->8234141925987468406 8234141925987468406->-1276915852228579675 -2987833993603488760 Filt/deduped BAM -2987833993603488760->2877423491752910817 -2987833993603488760->-5871163930219061399 -165343511263701391 chip.bam2ta_ctl -8880915626884668497 TAG-ALIGN -165343511263701391->-8880915626884668497 -8880915626884668497->-1276915852228579675 -2381753693901030890 Filt/deduped BAM -2381753693901030890->-165343511263701391 -2381753693901030890->-5871163930219061399 -1348186818244401761 chip.bam2ta_ctl -2417573463454375813 TAG-ALIGN -1348186818244401761->-2417573463454375813 -2417573463454375813->-1276915852228579675 -2308589703020571325 Filt/deduped BAM -2308589703020571325->-1348186818244401761 -2308589703020571325->-5871163930219061399 2159002945882346642 chip.bam2ta_ctl -8474312970234200905 TAG-ALIGN 2159002945882346642->-8474312970234200905 -8474312970234200905->-1276915852228579675 5673507084390478863 Filt/deduped BAM 5673507084390478863->2159002945882346642 5673507084390478863->-5871163930219061399 3708283517576959973 chip.bam2ta_ctl 6798358023256960827 TAG-ALIGN 3708283517576959973->6798358023256960827 6798358023256960827->-1276915852228579675 4950129786355308039 Filt/deduped BAM 4950129786355308039->3708283517576959973 4950129786355308039->-5871163930219061399 -8744022954496355924 chip.bam2ta_ctl -2543125134443597647 TAG-ALIGN -8744022954496355924->-2543125134443597647 -2543125134443597647->-1276915852228579675 -2661929947317175415 Filt/deduped BAM -2661929947317175415->-8744022954496355924 -2661929947317175415->-5871163930219061399 -8556857274392303377 chip.bam2ta_ctl 5988873053849477959 TAG-ALIGN -8556857274392303377->5988873053849477959 5988873053849477959->-1276915852228579675 5668460489854661419 Filt/deduped BAM 5668460489854661419->-8556857274392303377 5668460489854661419->-5871163930219061399 3199037982010863547 chip.bam2ta_ctl 5646347404733219693 TAG-ALIGN 3199037982010863547->5646347404733219693 5646347404733219693->-1276915852228579675 5359969756808918536 Filt/deduped BAM 5359969756808918536->3199037982010863547 5359969756808918536->-5871163930219061399 7531530915614501147 chip.bam2ta_ctl 1446290388942496825 TAG-ALIGN 7531530915614501147->1446290388942496825 1446290388942496825->-1276915852228579675 6293447764358936679 Filt/deduped BAM 6293447764358936679->7531530915614501147 6293447764358936679->-5871163930219061399 -7394498336054290318 chip.bam2ta_ctl -7473333307075470840 TAG-ALIGN -7394498336054290318->-7473333307075470840 -7473333307075470840->-1276915852228579675 -3801813779220720896 Filt/deduped BAM -3801813779220720896->-7394498336054290318 -3801813779220720896->-5871163930219061399 -4964057383539529662 chip.bam2ta_ctl 7878020630034955544 TAG-ALIGN -4964057383539529662->7878020630034955544 7878020630034955544->-1276915852228579675 2494703361070295831 Filt/deduped BAM 2494703361070295831->-4964057383539529662 2494703361070295831->-5871163930219061399 -1111322785827817848 chip.bam2ta_ctl -1782070379254804802 TAG-ALIGN -1111322785827817848->-1782070379254804802 -1782070379254804802->-1276915852228579675 -8044064705338548406 Filt/deduped BAM -8044064705338548406->-1111322785827817848 -8044064705338548406->-5871163930219061399 8911790091654720730 chip.bam2ta_ctl 1541720222616098634 TAG-ALIGN 8911790091654720730->1541720222616098634 1541720222616098634->-1276915852228579675 4585514567660596859 Filt/deduped BAM 4585514567660596859->8911790091654720730 4585514567660596859->-5871163930219061399 -4216094311148102730 chip.bam2ta_ctl 8006253086676206359 TAG-ALIGN -4216094311148102730->8006253086676206359 8006253086676206359->-1276915852228579675 6835312833297642665 Filt/deduped BAM 6835312833297642665->-4216094311148102730 6835312833297642665->-5871163930219061399 5771756596928016383 chip.bam2ta_ctl 724334926678673404 TAG-ALIGN 5771756596928016383->724334926678673404 724334926678673404->-1276915852228579675 8838634532045852982 Filt/deduped BAM 8838634532045852982->5771756596928016383 8838634532045852982->-5871163930219061399 -160973972466859088 chip.bam2ta_ctl 8707461530931588166 TAG-ALIGN -160973972466859088->8707461530931588166 8707461530931588166->-1276915852228579675 -5939392712881371170 Filt/deduped BAM -5939392712881371170->-160973972466859088 -5939392712881371170->-5871163930219061399 -4104725489091758139 chip.bam2ta_ctl 1739300967492702785 TAG-ALIGN -4104725489091758139->1739300967492702785 1739300967492702785->-1276915852228579675 -2307919189386002455 Filt/deduped BAM -2307919189386002455->-4104725489091758139 -2307919189386002455->-5871163930219061399 -3402224909952551495 IDR Plot ppr 1348018438258576305->-3402224909952551495 -5619656905479242457 IDR Peak ppr 1348018438258576305->-5619656905479242457 -5619656905479242457->-2035605581250029573 -3920961215235062816 IDR Plot rep1_vs_rep2 4555359924925519573->-3920961215235062816 1138367108274356756 IDR NPeak rep1_vs_rep2 4555359924925519573->1138367108274356756 1138367108274356756->-2035605581250029573 683691507088194504 Overlap Peak rep1_vs_rep2 6575332828644793433->683691507088194504 683691507088194504->-1843517748047137402 -6492565994354984100 Overlap Peak optimal -1843517748047137402->-6492565994354984100 4310431919242436471 Overlap reproducibility -1843517748047137402->4310431919242436471 -5026930815085607037 IDR Peak optimal -2035605581250029573->-5026930815085607037 5810450309319765634 IDR reproducibility -2035605581250029573->5810450309319765634 3492930827835158305 Overlap Peak ppr -4293117933877023392->3492930827835158305 3492930827835158305->-1843517748047137402 8746346812110370866 JSD Plot -5871163930219061399->8746346812110370866

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