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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF585XDY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF585XDY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF585XDY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF585XDY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585XDY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF669ZNL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF669ZNL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF669ZNL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF669ZNL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF669ZNL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.535M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.535M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.535M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF585XDY.crop_101-2bp.nodup.pr1_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF585XDY.crop_101-2bp.nodup.pr1_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF585XDY.crop_101-2bp.nodup.pr1_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF585XDY.crop_101-2bp.nodup.pr1_x_ctl.pooled.250M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF585XDY.crop_101-2bp.nodup.pr2_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF585XDY.crop_101-2bp.nodup.pr2_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF585XDY.crop_101-2bp.nodup.pr2_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF585XDY.crop_101-2bp.nodup.pr2_x_ctl.pooled.250M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF669ZNL.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF669ZNL.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF669ZNL.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF669ZNL.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF669ZNL.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF669ZNL.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF669ZNL.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF669ZNL.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.535M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF585XDY.crop_101-2bp.nodup.pr1_x_ctl.pooled.250M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF585XDY.crop_101-2bp.nodup.pr2_x_ctl.pooled.250M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF585XDY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF585XDY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF585XDY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF585XDY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF585XDY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF585XDY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF669ZNL.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF669ZNL.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF669ZNL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF669ZNL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF669ZNL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF669ZNL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF669ZNL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c4dc09dc-8207-4641-9e04-6c2fe7df9c58/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF669ZNL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF585XDY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/132402d9-49d8-4b6a-a7aa-40fbad97c43d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.535M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.535M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF585XDY.crop_101-2bp.nodup_x_ctl.pooled.250M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4dd8dd56-afba-4d73-86b2-3ee9f8fc3e94/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF669ZNL.crop_101-2bp.nodup_x_ctl.pooled.285M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 7616140349449417104 chip.macs2_signal_track_pooled 3659623013690172779 BW FC 7616140349449417104->3659623013690172779 -5631171064460072413 BW p-val 7616140349449417104->-5631171064460072413 5134407594726713661 chip.call_peak_pooled 7001474509950446460 Peak (bfilt) 5134407594726713661->7001474509950446460 2634452109628920611 Peak 5134407594726713661->2634452109628920611 7405911051514219694 chip.idr_ppr 2634452109628920611->7405911051514219694 5134523137704269203 chip.idr 2634452109628920611->5134523137704269203 9015329183921396786 chip.overlap 2634452109628920611->9015329183921396786 -345234606519183675 chip.overlap_ppr 2634452109628920611->-345234606519183675 486393087028111714 chip.pool_ta 778521920324258259 TAG-ALIGN 486393087028111714->778521920324258259 778521920324258259->7616140349449417104 778521920324258259->5134407594726713661 778521920324258259->7405911051514219694 778521920324258259->5134523137704269203 778521920324258259->9015329183921396786 778521920324258259->-345234606519183675 -1358778672718365813 chip.call_peak -9188116205650319663 Peak (bfilt) -1358778672718365813->-9188116205650319663 6413900542077735977 Peak -1358778672718365813->6413900542077735977 6413900542077735977->5134523137704269203 6413900542077735977->9015329183921396786 -9122575345308428759 chip.reproducibility_overlap 6413900542077735977->-9122575345308428759 3647006600322428818 chip.reproducibility_idr 6413900542077735977->3647006600322428818 -8576546725849326680 chip.bam2ta -4375264576613600718 TAG-ALIGN -8576546725849326680->-4375264576613600718 -4375264576613600718->486393087028111714 -4375264576613600718->-1358778672718365813 -226552336116546781 chip.macs2_signal_track -4375264576613600718->-226552336116546781 -4375264576613600718->7405911051514219694 -4375264576613600718->-9122575345308428759 -4375264576613600718->3647006600322428818 -4375264576613600718->-345234606519183675 -3568497708642295209 chip.filter 8068986117694205959 SAMstats QC -3568497708642295209->8068986117694205959 -3823759551696440472 Filt/deduped BAM -3568497708642295209->-3823759551696440472 2642828452352203616 LibCmplx QC -3568497708642295209->2642828452352203616 -3823759551696440472->-8576546725849326680 -1786075158331843799 chip.jsd -3823759551696440472->-1786075158331843799 -1812123719154757782 chip.align 2524014846158202371 SAMstats QC -1812123719154757782->2524014846158202371 -5370647583846750284 BAM -1812123719154757782->-5370647583846750284 -5370647583846750284->-3568497708642295209 6012058340872599478 chip.xcor -6995799649700422090 XCOR Plot 6012058340872599478->-6995799649700422090 6387095923641073650 BW FC -226552336116546781->6387095923641073650 362809928216385935 BW p-val -226552336116546781->362809928216385935 -136153644454610193 FASTQ R1 (1) -136153644454610193->-1812123719154757782 -136153644454610193->6012058340872599478 -4877742114205834978 FASTQ R2 (1) -4877742114205834978->-1812123719154757782 2433737291329655894 chip.call_peak -8684096496353193640 Peak (bfilt) 2433737291329655894->-8684096496353193640 -892541448072224645 Peak 2433737291329655894->-892541448072224645 -892541448072224645->5134523137704269203 -892541448072224645->9015329183921396786 -892541448072224645->-9122575345308428759 -892541448072224645->3647006600322428818 3202686562443033780 chip.bam2ta -8339114469858159924 TAG-ALIGN 3202686562443033780->-8339114469858159924 -8339114469858159924->486393087028111714 -8339114469858159924->2433737291329655894 7340860271812595646 chip.macs2_signal_track -8339114469858159924->7340860271812595646 -8339114469858159924->7405911051514219694 -8339114469858159924->-9122575345308428759 -8339114469858159924->3647006600322428818 -8339114469858159924->-345234606519183675 -7894958191039727313 chip.filter -3127587581953223449 SAMstats QC -7894958191039727313->-3127587581953223449 -5802336047282112087 Filt/deduped BAM -7894958191039727313->-5802336047282112087 3250000745437267814 LibCmplx QC -7894958191039727313->3250000745437267814 -5802336047282112087->3202686562443033780 -5802336047282112087->-1786075158331843799 -4957245796601989854 chip.align -1538417955778053896 SAMstats QC -4957245796601989854->-1538417955778053896 2406800199361280613 BAM -4957245796601989854->2406800199361280613 2406800199361280613->-7894958191039727313 -3771948601746498879 chip.xcor -2219186935337046508 XCOR Plot -3771948601746498879->-2219186935337046508 -2768767451892864826 BW FC 7340860271812595646->-2768767451892864826 8570532576756632364 BW p-val 7340860271812595646->8570532576756632364 1365853314461168470 FASTQ R1 (1) 1365853314461168470->-4957245796601989854 1365853314461168470->-3771948601746498879 -3637296745311407914 FASTQ R2 (1) -3637296745311407914->-4957245796601989854 1018338674653499348 chip.pool_ta_ctl -5832214629778168768 TAG-ALIGN 1018338674653499348->-5832214629778168768 -5832214629778168768->7616140349449417104 -5832214629778168768->5134407594726713661 -5832214629778168768->-1358778672718365813 -5832214629778168768->-226552336116546781 -5832214629778168768->2433737291329655894 -5832214629778168768->7340860271812595646 -5832214629778168768->7405911051514219694 -5832214629778168768->-9122575345308428759 -5832214629778168768->3647006600322428818 -5832214629778168768->-345234606519183675 -3874319132393472469 chip.bam2ta_ctl -654931896918241107 TAG-ALIGN -3874319132393472469->-654931896918241107 -654931896918241107->1018338674653499348 4166359720790024482 Filt/deduped BAM 4166359720790024482->-3874319132393472469 4166359720790024482->-1786075158331843799 4116477189181614203 chip.bam2ta_ctl -2352848387157022051 TAG-ALIGN 4116477189181614203->-2352848387157022051 -2352848387157022051->1018338674653499348 -983682809199781055 Filt/deduped BAM -983682809199781055->4116477189181614203 -983682809199781055->-1786075158331843799 -7508200456764903164 chip.bam2ta_ctl -7092670489510821680 TAG-ALIGN -7508200456764903164->-7092670489510821680 -7092670489510821680->1018338674653499348 -3074677090192186676 Filt/deduped BAM -3074677090192186676->-7508200456764903164 -3074677090192186676->-1786075158331843799 193777954157569240 chip.bam2ta_ctl -9198242063539462786 TAG-ALIGN 193777954157569240->-9198242063539462786 -9198242063539462786->1018338674653499348 -1349769414605848455 Filt/deduped BAM -1349769414605848455->193777954157569240 -1349769414605848455->-1786075158331843799 5275767891368322822 chip.bam2ta_ctl -538523179246364002 TAG-ALIGN 5275767891368322822->-538523179246364002 -538523179246364002->1018338674653499348 -8830641708329787726 Filt/deduped BAM -8830641708329787726->5275767891368322822 -8830641708329787726->-1786075158331843799 -4631852219010560938 chip.bam2ta_ctl 2956463187863818390 TAG-ALIGN -4631852219010560938->2956463187863818390 2956463187863818390->1018338674653499348 -152528857827316427 Filt/deduped BAM -152528857827316427->-4631852219010560938 -152528857827316427->-1786075158331843799 4759826655832945336 chip.bam2ta_ctl 5627245730099468332 TAG-ALIGN 4759826655832945336->5627245730099468332 5627245730099468332->1018338674653499348 6774268056733278840 Filt/deduped BAM 6774268056733278840->4759826655832945336 6774268056733278840->-1786075158331843799 8420022585482002649 chip.bam2ta_ctl -6526927990924316469 TAG-ALIGN 8420022585482002649->-6526927990924316469 -6526927990924316469->1018338674653499348 -1835838361060517609 Filt/deduped BAM -1835838361060517609->8420022585482002649 -1835838361060517609->-1786075158331843799 -8982552585041793263 chip.bam2ta_ctl -1317726163687834507 TAG-ALIGN -8982552585041793263->-1317726163687834507 -1317726163687834507->1018338674653499348 6887342891923798436 Filt/deduped BAM 6887342891923798436->-8982552585041793263 6887342891923798436->-1786075158331843799 -5334974566750152769 chip.bam2ta_ctl 6717050183386261693 TAG-ALIGN -5334974566750152769->6717050183386261693 6717050183386261693->1018338674653499348 -138413640320219203 Filt/deduped BAM -138413640320219203->-5334974566750152769 -138413640320219203->-1786075158331843799 -618853771635091377 chip.bam2ta_ctl 3255744621546182579 TAG-ALIGN -618853771635091377->3255744621546182579 3255744621546182579->1018338674653499348 -558868903486727202 Filt/deduped BAM -558868903486727202->-618853771635091377 -558868903486727202->-1786075158331843799 3622033164841037785 chip.bam2ta_ctl 2938035190695887252 TAG-ALIGN 3622033164841037785->2938035190695887252 2938035190695887252->1018338674653499348 3319433136584259286 Filt/deduped BAM 3319433136584259286->3622033164841037785 3319433136584259286->-1786075158331843799 -5401630497568065651 chip.bam2ta_ctl -3660087447042830019 TAG-ALIGN -5401630497568065651->-3660087447042830019 -3660087447042830019->1018338674653499348 3923892276836955716 Filt/deduped BAM 3923892276836955716->-5401630497568065651 3923892276836955716->-1786075158331843799 4984704745628538079 chip.bam2ta_ctl 7765551627538286187 TAG-ALIGN 4984704745628538079->7765551627538286187 7765551627538286187->1018338674653499348 5051026313059005947 Filt/deduped BAM 5051026313059005947->4984704745628538079 5051026313059005947->-1786075158331843799 2763865287651164372 chip.bam2ta_ctl -7640452292584259105 TAG-ALIGN 2763865287651164372->-7640452292584259105 -7640452292584259105->1018338674653499348 5858537934166403869 Filt/deduped BAM 5858537934166403869->2763865287651164372 5858537934166403869->-1786075158331843799 1288869840836215056 chip.bam2ta_ctl -3971645493347434925 TAG-ALIGN 1288869840836215056->-3971645493347434925 -3971645493347434925->1018338674653499348 -3407093824775631586 Filt/deduped BAM -3407093824775631586->1288869840836215056 -3407093824775631586->-1786075158331843799 -2064243813262332940 chip.bam2ta_ctl 3991536652808455842 TAG-ALIGN -2064243813262332940->3991536652808455842 3991536652808455842->1018338674653499348 4553051608082670656 Filt/deduped BAM 4553051608082670656->-2064243813262332940 4553051608082670656->-1786075158331843799 -4280822140307866820 chip.bam2ta_ctl -6615217853716114216 TAG-ALIGN -4280822140307866820->-6615217853716114216 -6615217853716114216->1018338674653499348 -2028168668528480059 Filt/deduped BAM -2028168668528480059->-4280822140307866820 -2028168668528480059->-1786075158331843799 -8439883553382409533 chip.bam2ta_ctl -781232398134958230 TAG-ALIGN -8439883553382409533->-781232398134958230 -781232398134958230->1018338674653499348 4726084946201522297 Filt/deduped BAM 4726084946201522297->-8439883553382409533 4726084946201522297->-1786075158331843799 -3495723059410579686 chip.bam2ta_ctl 2112060011911100862 TAG-ALIGN -3495723059410579686->2112060011911100862 2112060011911100862->1018338674653499348 7191060607615776951 Filt/deduped BAM 7191060607615776951->-3495723059410579686 7191060607615776951->-1786075158331843799 -4131183711757538202 chip.bam2ta_ctl 3984419869045951704 TAG-ALIGN -4131183711757538202->3984419869045951704 3984419869045951704->1018338674653499348 -3477073803124733140 Filt/deduped BAM -3477073803124733140->-4131183711757538202 -3477073803124733140->-1786075158331843799 2862968463846051856 chip.bam2ta_ctl -5939918748102176813 TAG-ALIGN 2862968463846051856->-5939918748102176813 -5939918748102176813->1018338674653499348 7740432435927523648 Filt/deduped BAM 7740432435927523648->2862968463846051856 7740432435927523648->-1786075158331843799 -4618789040052620039 chip.bam2ta_ctl 3163463063364492423 TAG-ALIGN -4618789040052620039->3163463063364492423 3163463063364492423->1018338674653499348 -2355698957198472636 Filt/deduped BAM -2355698957198472636->-4618789040052620039 -2355698957198472636->-1786075158331843799 -6043103281626311733 chip.bam2ta_ctl -5342854398936642571 TAG-ALIGN -6043103281626311733->-5342854398936642571 -5342854398936642571->1018338674653499348 -298172014063608089 Filt/deduped BAM -298172014063608089->-6043103281626311733 -298172014063608089->-1786075158331843799 8914389584340158012 IDR Plot ppr 7405911051514219694->8914389584340158012 2417854566547093385 IDR Peak ppr 7405911051514219694->2417854566547093385 2417854566547093385->3647006600322428818 4998824629528502766 IDR Plot rep1_vs_rep2 5134523137704269203->4998824629528502766 8969732674562035964 IDR NPeak rep1_vs_rep2 5134523137704269203->8969732674562035964 8969732674562035964->3647006600322428818 6795355528045010996 Overlap Peak rep1_vs_rep2 9015329183921396786->6795355528045010996 6795355528045010996->-9122575345308428759 6222034002380832850 Overlap Peak optimal -9122575345308428759->6222034002380832850 6118121840596069758 Overlap reproducibility -9122575345308428759->6118121840596069758 6258420122341484902 IDR Peak optimal 3647006600322428818->6258420122341484902 8710204410308402964 IDR reproducibility 3647006600322428818->8710204410308402964 9128119074487121030 Overlap Peak ppr -345234606519183675->9128119074487121030 9128119074487121030->-9122575345308428759 -1944686675375861825 JSD Plot -1786075158331843799->-1944686675375861825

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