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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF193OEU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF193OEU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF193OEU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF193OEU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF193OEU.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF508MSA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF508MSA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF508MSA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF508MSA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF508MSA.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.432M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.432M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.432M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF193OEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF193OEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF193OEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF193OEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF193OEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF193OEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF193OEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF193OEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF508MSA.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF508MSA.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF508MSA.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF508MSA.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF508MSA.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF508MSA.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF508MSA.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF508MSA.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.432M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF193OEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF193OEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF193OEU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF193OEU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF193OEU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF193OEU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF193OEU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF193OEU.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF508MSA.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF508MSA.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF508MSA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF508MSA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF508MSA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF508MSA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF508MSA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF508MSA.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF193OEU.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/268eef33-f03e-4f98-bffc-c638df090fc0/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.432M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.432M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF193OEU.crop_101-2bp.nodup_x_ctl.pooled.211M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/26cb6b4a-bdcd-4afb-a822-3b83b7a1a51b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF508MSA.crop_101-2bp.nodup_x_ctl.pooled.221M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5944856841363788699 chip.macs2_signal_track_pooled 4096281923005094864 BW FC 5944856841363788699->4096281923005094864 4307015583065107732 BW p-val 5944856841363788699->4307015583065107732 -3261728919034152092 chip.call_peak_pooled 5194595716709456872 Peak (bfilt) -3261728919034152092->5194595716709456872 -5183062764282658080 Peak -3261728919034152092->-5183062764282658080 3120222030871932200 chip.idr_ppr -5183062764282658080->3120222030871932200 -6419436471070845117 chip.idr -5183062764282658080->-6419436471070845117 -8172325112282573125 chip.overlap -5183062764282658080->-8172325112282573125 7136266955093704338 chip.overlap_ppr -5183062764282658080->7136266955093704338 -2689085088661481653 chip.pool_ta -1332017457633590601 TAG-ALIGN -2689085088661481653->-1332017457633590601 -1332017457633590601->5944856841363788699 -1332017457633590601->-3261728919034152092 -1332017457633590601->3120222030871932200 -1332017457633590601->-6419436471070845117 -1332017457633590601->-8172325112282573125 -1332017457633590601->7136266955093704338 -370482439909651030 chip.call_peak -127698751993812945 Peak (bfilt) -370482439909651030->-127698751993812945 4670518070201488196 Peak -370482439909651030->4670518070201488196 4670518070201488196->-6419436471070845117 4670518070201488196->-8172325112282573125 -5672311903719195704 chip.reproducibility_overlap 4670518070201488196->-5672311903719195704 -6213794355726886989 chip.reproducibility_idr 4670518070201488196->-6213794355726886989 5723353370066443904 chip.bam2ta 7639221427244421865 TAG-ALIGN 5723353370066443904->7639221427244421865 7639221427244421865->-2689085088661481653 7639221427244421865->-370482439909651030 8701181244259536164 chip.macs2_signal_track 7639221427244421865->8701181244259536164 7639221427244421865->3120222030871932200 7639221427244421865->-5672311903719195704 7639221427244421865->-6213794355726886989 7639221427244421865->7136266955093704338 4331671248258157333 chip.filter -7196012601090705666 SAMstats QC 4331671248258157333->-7196012601090705666 -4409423063085074076 Filt/deduped BAM 4331671248258157333->-4409423063085074076 -1818374391180634872 LibCmplx QC 4331671248258157333->-1818374391180634872 -4409423063085074076->5723353370066443904 -2846257812213291136 chip.jsd -4409423063085074076->-2846257812213291136 -1531681052650689782 chip.align 5850803349305470394 SAMstats QC -1531681052650689782->5850803349305470394 -285631146951856590 BAM -1531681052650689782->-285631146951856590 -285631146951856590->4331671248258157333 -1427417321525074376 chip.xcor 593939287670411815 XCOR Plot -1427417321525074376->593939287670411815 -2721362347046790620 BW FC 8701181244259536164->-2721362347046790620 -7098789694189802205 BW p-val 8701181244259536164->-7098789694189802205 -5051265251804329821 FASTQ R1 (1) -5051265251804329821->-1531681052650689782 -5051265251804329821->-1427417321525074376 -3250586482412113479 FASTQ R2 (1) -3250586482412113479->-1531681052650689782 4358378863828854457 chip.call_peak 441909105192390045 Peak (bfilt) 4358378863828854457->441909105192390045 -1541098473746282603 Peak 4358378863828854457->-1541098473746282603 -1541098473746282603->-6419436471070845117 -1541098473746282603->-8172325112282573125 -1541098473746282603->-5672311903719195704 -1541098473746282603->-6213794355726886989 -7052586794733809832 chip.bam2ta 5037611372444267111 TAG-ALIGN -7052586794733809832->5037611372444267111 5037611372444267111->-2689085088661481653 5037611372444267111->4358378863828854457 -1139818243680241620 chip.macs2_signal_track 5037611372444267111->-1139818243680241620 5037611372444267111->3120222030871932200 5037611372444267111->-5672311903719195704 5037611372444267111->-6213794355726886989 5037611372444267111->7136266955093704338 4223408280291554045 chip.filter 640654034240735997 SAMstats QC 4223408280291554045->640654034240735997 4963633390146053621 Filt/deduped BAM 4223408280291554045->4963633390146053621 -3699698735755103046 LibCmplx QC 4223408280291554045->-3699698735755103046 4963633390146053621->-7052586794733809832 4963633390146053621->-2846257812213291136 2513623762375879446 chip.align 4994828497620284775 SAMstats QC 2513623762375879446->4994828497620284775 -4164102440925721888 BAM 2513623762375879446->-4164102440925721888 -4164102440925721888->4223408280291554045 -2465482437641986140 chip.xcor 5362233512467170147 XCOR Plot -2465482437641986140->5362233512467170147 5306522889912694111 BW FC -1139818243680241620->5306522889912694111 3601293907027014505 BW p-val -1139818243680241620->3601293907027014505 -5272603083965135139 FASTQ R1 (1) -5272603083965135139->2513623762375879446 -5272603083965135139->-2465482437641986140 -4845989103985843943 FASTQ R2 (1) -4845989103985843943->2513623762375879446 -6807952463250579551 chip.pool_ta_ctl -7661841178221057046 TAG-ALIGN -6807952463250579551->-7661841178221057046 -7661841178221057046->5944856841363788699 -7661841178221057046->-3261728919034152092 -7661841178221057046->-370482439909651030 -7661841178221057046->8701181244259536164 -7661841178221057046->4358378863828854457 -7661841178221057046->-1139818243680241620 -7661841178221057046->3120222030871932200 -7661841178221057046->-5672311903719195704 -7661841178221057046->-6213794355726886989 -7661841178221057046->7136266955093704338 -5800459250572722791 chip.bam2ta_ctl -1806202774310055715 TAG-ALIGN -5800459250572722791->-1806202774310055715 -1806202774310055715->-6807952463250579551 -4295054814632815834 Filt/deduped BAM -4295054814632815834->-5800459250572722791 -4295054814632815834->-2846257812213291136 8841988178008034327 chip.bam2ta_ctl 5031897246409320694 TAG-ALIGN 8841988178008034327->5031897246409320694 5031897246409320694->-6807952463250579551 -3790005209645104102 Filt/deduped BAM -3790005209645104102->8841988178008034327 -3790005209645104102->-2846257812213291136 -6715494103864084527 chip.bam2ta_ctl 2107097532226135459 TAG-ALIGN -6715494103864084527->2107097532226135459 2107097532226135459->-6807952463250579551 553494378070766642 Filt/deduped BAM 553494378070766642->-6715494103864084527 553494378070766642->-2846257812213291136 7251570190243809272 chip.bam2ta_ctl -3653030093057375870 TAG-ALIGN 7251570190243809272->-3653030093057375870 -3653030093057375870->-6807952463250579551 6687146400211310843 Filt/deduped BAM 6687146400211310843->7251570190243809272 6687146400211310843->-2846257812213291136 -6220222555464482471 chip.bam2ta_ctl 2746404166535144205 TAG-ALIGN -6220222555464482471->2746404166535144205 2746404166535144205->-6807952463250579551 -6929297535208900542 Filt/deduped BAM -6929297535208900542->-6220222555464482471 -6929297535208900542->-2846257812213291136 1286026683729083357 chip.bam2ta_ctl 7001772178824164004 TAG-ALIGN 1286026683729083357->7001772178824164004 7001772178824164004->-6807952463250579551 9182816238777504174 Filt/deduped BAM 9182816238777504174->1286026683729083357 9182816238777504174->-2846257812213291136 -1111768065266124639 chip.bam2ta_ctl -7239179309469767458 TAG-ALIGN -1111768065266124639->-7239179309469767458 -7239179309469767458->-6807952463250579551 -8065491198811301455 Filt/deduped BAM -8065491198811301455->-1111768065266124639 -8065491198811301455->-2846257812213291136 -3715773219833362895 chip.bam2ta_ctl 6126303646867853205 TAG-ALIGN -3715773219833362895->6126303646867853205 6126303646867853205->-6807952463250579551 -3290427191700660601 Filt/deduped BAM -3290427191700660601->-3715773219833362895 -3290427191700660601->-2846257812213291136 6617691655583081889 chip.bam2ta_ctl 4959333686683794588 TAG-ALIGN 6617691655583081889->4959333686683794588 4959333686683794588->-6807952463250579551 -2219903761014182051 Filt/deduped BAM -2219903761014182051->6617691655583081889 -2219903761014182051->-2846257812213291136 -5607873450506919711 chip.bam2ta_ctl -3853859002726801073 TAG-ALIGN -5607873450506919711->-3853859002726801073 -3853859002726801073->-6807952463250579551 4729864015882641467 Filt/deduped BAM 4729864015882641467->-5607873450506919711 4729864015882641467->-2846257812213291136 -6931476213029074045 chip.bam2ta_ctl -5231521243441331009 TAG-ALIGN -6931476213029074045->-5231521243441331009 -5231521243441331009->-6807952463250579551 -5039630548286558240 Filt/deduped BAM -5039630548286558240->-6931476213029074045 -5039630548286558240->-2846257812213291136 -7505431986985537758 chip.bam2ta_ctl -1857877473823131878 TAG-ALIGN -7505431986985537758->-1857877473823131878 -1857877473823131878->-6807952463250579551 519898978518539141 Filt/deduped BAM 519898978518539141->-7505431986985537758 519898978518539141->-2846257812213291136 5624619496908306636 chip.bam2ta_ctl -6239073109787442817 TAG-ALIGN 5624619496908306636->-6239073109787442817 -6239073109787442817->-6807952463250579551 4059914400132951821 Filt/deduped BAM 4059914400132951821->5624619496908306636 4059914400132951821->-2846257812213291136 132063619550255118 chip.bam2ta_ctl 4254634089674968344 TAG-ALIGN 132063619550255118->4254634089674968344 4254634089674968344->-6807952463250579551 2055946140753366141 Filt/deduped BAM 2055946140753366141->132063619550255118 2055946140753366141->-2846257812213291136 7465767952968958267 chip.bam2ta_ctl -4452889978343250396 TAG-ALIGN 7465767952968958267->-4452889978343250396 -4452889978343250396->-6807952463250579551 188367517213675073 Filt/deduped BAM 188367517213675073->7465767952968958267 188367517213675073->-2846257812213291136 2923354862323019018 chip.bam2ta_ctl -7485049171795534966 TAG-ALIGN 2923354862323019018->-7485049171795534966 -7485049171795534966->-6807952463250579551 -4412470812616495431 Filt/deduped BAM -4412470812616495431->2923354862323019018 -4412470812616495431->-2846257812213291136 3423940544439838339 chip.bam2ta_ctl 2258197370028936795 TAG-ALIGN 3423940544439838339->2258197370028936795 2258197370028936795->-6807952463250579551 6040103795861011858 Filt/deduped BAM 6040103795861011858->3423940544439838339 6040103795861011858->-2846257812213291136 -714833157052724596 chip.bam2ta_ctl -7464293779165532480 TAG-ALIGN -714833157052724596->-7464293779165532480 -7464293779165532480->-6807952463250579551 5668519359674982103 Filt/deduped BAM 5668519359674982103->-714833157052724596 5668519359674982103->-2846257812213291136 -2472859060902338538 chip.bam2ta_ctl -3628841987227320261 TAG-ALIGN -2472859060902338538->-3628841987227320261 -3628841987227320261->-6807952463250579551 4452838732290826065 Filt/deduped BAM 4452838732290826065->-2472859060902338538 4452838732290826065->-2846257812213291136 1452409883839777908 chip.bam2ta_ctl -7365435450878293305 TAG-ALIGN 1452409883839777908->-7365435450878293305 -7365435450878293305->-6807952463250579551 6786024596182483936 Filt/deduped BAM 6786024596182483936->1452409883839777908 6786024596182483936->-2846257812213291136 -454461104397070602 chip.bam2ta_ctl -939356884925877350 TAG-ALIGN -454461104397070602->-939356884925877350 -939356884925877350->-6807952463250579551 -6059348096027301016 Filt/deduped BAM -6059348096027301016->-454461104397070602 -6059348096027301016->-2846257812213291136 -9223120723111507214 chip.bam2ta_ctl -2989749713430941115 TAG-ALIGN -9223120723111507214->-2989749713430941115 -2989749713430941115->-6807952463250579551 -1201917184054097950 Filt/deduped BAM -1201917184054097950->-9223120723111507214 -1201917184054097950->-2846257812213291136 8127731245041384094 chip.bam2ta_ctl -4057983421007057574 TAG-ALIGN 8127731245041384094->-4057983421007057574 -4057983421007057574->-6807952463250579551 -8817524140102799202 Filt/deduped BAM -8817524140102799202->8127731245041384094 -8817524140102799202->-2846257812213291136 -959399124524617195 chip.bam2ta_ctl -4646364104559010926 TAG-ALIGN -959399124524617195->-4646364104559010926 -4646364104559010926->-6807952463250579551 -5327434191067447734 Filt/deduped BAM -5327434191067447734->-959399124524617195 -5327434191067447734->-2846257812213291136 300550668822751438 IDR Plot ppr 3120222030871932200->300550668822751438 4157906803432521907 IDR Peak ppr 3120222030871932200->4157906803432521907 4157906803432521907->-6213794355726886989 6731341177171329525 IDR Plot rep1_vs_rep2 -6419436471070845117->6731341177171329525 2815474001723588824 IDR NPeak rep1_vs_rep2 -6419436471070845117->2815474001723588824 2815474001723588824->-6213794355726886989 -6529953471851927135 Overlap Peak rep1_vs_rep2 -8172325112282573125->-6529953471851927135 -6529953471851927135->-5672311903719195704 2606508633788231331 Overlap Peak optimal -5672311903719195704->2606508633788231331 -4706250143592620033 Overlap reproducibility -5672311903719195704->-4706250143592620033 1601170002779776931 IDR Peak optimal -6213794355726886989->1601170002779776931 -1110663993080723474 IDR reproducibility -6213794355726886989->-1110663993080723474 -4957582196887985444 Overlap Peak ppr 7136266955093704338->-4957582196887985444 -4957582196887985444->-5672311903719195704 5532749149459123374 JSD Plot -2846257812213291136->5532749149459123374

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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