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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF022LNW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF022LNW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF022LNW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF022LNW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF022LNW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF896GER.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF896GER.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF896GER.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF896GER.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF896GER.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.601M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.601M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.601M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.601M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.601M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.601M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.601M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF022LNW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF022LNW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF022LNW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF022LNW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF022LNW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF022LNW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF896GER.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF896GER.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF896GER.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF896GER.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF896GER.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF896GER.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF022LNW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.601M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.601M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5362295573765111967 chip.macs2_signal_track_pooled 3111480324286765573 BW FC -5362295573765111967->3111480324286765573 5563809290131724756 BW p-val -5362295573765111967->5563809290131724756 1739375320305762032 chip.call_peak_pooled 9006658112931409890 Peak (bfilt) 1739375320305762032->9006658112931409890 7364209397700446050 Peak 1739375320305762032->7364209397700446050 59071206055226171 chip.idr_ppr 7364209397700446050->59071206055226171 7857859195186177997 chip.idr 7364209397700446050->7857859195186177997 2031092787303920 chip.overlap 7364209397700446050->2031092787303920 6118007254740379923 chip.overlap_ppr 7364209397700446050->6118007254740379923 6370053873250013718 chip.pool_ta 5796237406508195551 TAG-ALIGN 6370053873250013718->5796237406508195551 5796237406508195551->-5362295573765111967 5796237406508195551->1739375320305762032 5796237406508195551->59071206055226171 5796237406508195551->7857859195186177997 5796237406508195551->2031092787303920 5796237406508195551->6118007254740379923 -2990537065796794506 chip.call_peak -7805777299102559952 Peak (bfilt) -2990537065796794506->-7805777299102559952 -5825817460918248633 Peak -2990537065796794506->-5825817460918248633 -5825817460918248633->7857859195186177997 -5825817460918248633->2031092787303920 -7916356297230875718 chip.reproducibility_overlap -5825817460918248633->-7916356297230875718 -1468063099303328291 chip.reproducibility_idr -5825817460918248633->-1468063099303328291 6045368898748859256 chip.bam2ta 4923043088305700914 TAG-ALIGN 6045368898748859256->4923043088305700914 4923043088305700914->6370053873250013718 4923043088305700914->-2990537065796794506 -8639584048335451182 chip.macs2_signal_track 4923043088305700914->-8639584048335451182 4923043088305700914->59071206055226171 4923043088305700914->-7916356297230875718 4923043088305700914->-1468063099303328291 4923043088305700914->6118007254740379923 -5994187682851378249 chip.filter 1292828065619079057 SAMstats QC -5994187682851378249->1292828065619079057 -1795462067360796953 Filt/deduped BAM -5994187682851378249->-1795462067360796953 -6296198118876899977 LibCmplx QC -5994187682851378249->-6296198118876899977 -1795462067360796953->6045368898748859256 7987809479098050523 chip.jsd -1795462067360796953->7987809479098050523 -3636148122937726553 chip.align -7435593318320337792 SAMstats QC -3636148122937726553->-7435593318320337792 4399552430436719878 BAM -3636148122937726553->4399552430436719878 4399552430436719878->-5994187682851378249 -3430953723497515065 chip.xcor 2836387339224264065 XCOR Plot -3430953723497515065->2836387339224264065 8350684594792883654 BW FC -8639584048335451182->8350684594792883654 3473484180376499561 BW p-val -8639584048335451182->3473484180376499561 4448830348549225196 FASTQ R1 (1) 4448830348549225196->-3636148122937726553 4448830348549225196->-3430953723497515065 -1942680865549963875 FASTQ R2 (1) -1942680865549963875->-3636148122937726553 -99703995732226762 chip.call_peak 6803942821878643838 Peak (bfilt) -99703995732226762->6803942821878643838 -3693226716104809616 Peak -99703995732226762->-3693226716104809616 -3693226716104809616->7857859195186177997 -3693226716104809616->2031092787303920 -3693226716104809616->-7916356297230875718 -3693226716104809616->-1468063099303328291 860562997117408454 chip.bam2ta 5001260797181556231 TAG-ALIGN 860562997117408454->5001260797181556231 5001260797181556231->6370053873250013718 5001260797181556231->-99703995732226762 8255431834552169623 chip.macs2_signal_track 5001260797181556231->8255431834552169623 5001260797181556231->59071206055226171 5001260797181556231->-7916356297230875718 5001260797181556231->-1468063099303328291 5001260797181556231->6118007254740379923 -5214828682435750330 chip.filter 3220137694197242045 SAMstats QC -5214828682435750330->3220137694197242045 -3729009531850912911 Filt/deduped BAM -5214828682435750330->-3729009531850912911 -8556682735468783671 LibCmplx QC -5214828682435750330->-8556682735468783671 -3729009531850912911->860562997117408454 -3729009531850912911->7987809479098050523 5985751718798809724 chip.align 1918997423440640980 SAMstats QC 5985751718798809724->1918997423440640980 -1443700105112777610 BAM 5985751718798809724->-1443700105112777610 -1443700105112777610->-5214828682435750330 -1042330056451049673 chip.xcor 6542035941935856306 XCOR Plot -1042330056451049673->6542035941935856306 -4194110215861370937 BW FC 8255431834552169623->-4194110215861370937 -7236644699731286677 BW p-val 8255431834552169623->-7236644699731286677 -8267591591349348775 FASTQ R1 (1) -8267591591349348775->5985751718798809724 -8267591591349348775->-1042330056451049673 -9115960034896371845 FASTQ R2 (1) -9115960034896371845->5985751718798809724 -9203536746656225100 chip.pool_ta_ctl -8055855681753611229 TAG-ALIGN -9203536746656225100->-8055855681753611229 -8055855681753611229->-5362295573765111967 -8055855681753611229->1739375320305762032 -8055855681753611229->-2990537065796794506 -8055855681753611229->-8639584048335451182 -8055855681753611229->-99703995732226762 -8055855681753611229->8255431834552169623 -8055855681753611229->59071206055226171 -8055855681753611229->-7916356297230875718 -8055855681753611229->-1468063099303328291 -8055855681753611229->6118007254740379923 772672559565179608 chip.bam2ta_ctl 6588423895819302732 TAG-ALIGN 772672559565179608->6588423895819302732 6588423895819302732->-9203536746656225100 -5166052346561703316 Filt/deduped BAM -5166052346561703316->772672559565179608 -5166052346561703316->7987809479098050523 3270541825972083293 chip.bam2ta_ctl 2366961134872707302 TAG-ALIGN 3270541825972083293->2366961134872707302 2366961134872707302->-9203536746656225100 -3734389974175666836 Filt/deduped BAM -3734389974175666836->3270541825972083293 -3734389974175666836->7987809479098050523 -7037887385326495660 chip.bam2ta_ctl 5013065695219044116 TAG-ALIGN -7037887385326495660->5013065695219044116 5013065695219044116->-9203536746656225100 1701024440364351322 Filt/deduped BAM 1701024440364351322->-7037887385326495660 1701024440364351322->7987809479098050523 -8540649454576165566 chip.bam2ta_ctl -2413508763559162439 TAG-ALIGN -8540649454576165566->-2413508763559162439 -2413508763559162439->-9203536746656225100 -3855186214930024736 Filt/deduped BAM -3855186214930024736->-8540649454576165566 -3855186214930024736->7987809479098050523 7730509467161066600 chip.bam2ta_ctl -6759397694623091277 TAG-ALIGN 7730509467161066600->-6759397694623091277 -6759397694623091277->-9203536746656225100 -4994414456006243079 Filt/deduped BAM -4994414456006243079->7730509467161066600 -4994414456006243079->7987809479098050523 5142700728898256874 chip.bam2ta_ctl 9101475175834528575 TAG-ALIGN 5142700728898256874->9101475175834528575 9101475175834528575->-9203536746656225100 6858298135937136204 Filt/deduped BAM 6858298135937136204->5142700728898256874 6858298135937136204->7987809479098050523 -8338635495309412985 chip.bam2ta_ctl 3214801497575076690 TAG-ALIGN -8338635495309412985->3214801497575076690 3214801497575076690->-9203536746656225100 7231118327505362835 Filt/deduped BAM 7231118327505362835->-8338635495309412985 7231118327505362835->7987809479098050523 4276966535137987065 chip.bam2ta_ctl 6131104932860812326 TAG-ALIGN 4276966535137987065->6131104932860812326 6131104932860812326->-9203536746656225100 -7450508651859625906 Filt/deduped BAM -7450508651859625906->4276966535137987065 -7450508651859625906->7987809479098050523 -8964869956586972825 chip.bam2ta_ctl -1165695427002123498 TAG-ALIGN -8964869956586972825->-1165695427002123498 -1165695427002123498->-9203536746656225100 1712854858095206789 Filt/deduped BAM 1712854858095206789->-8964869956586972825 1712854858095206789->7987809479098050523 -178478713856916379 chip.bam2ta_ctl 3341037685790541964 TAG-ALIGN -178478713856916379->3341037685790541964 3341037685790541964->-9203536746656225100 4604911319871495042 Filt/deduped BAM 4604911319871495042->-178478713856916379 4604911319871495042->7987809479098050523 -6807727459090442311 chip.bam2ta_ctl -4180476827428982318 TAG-ALIGN -6807727459090442311->-4180476827428982318 -4180476827428982318->-9203536746656225100 7631024981500709065 Filt/deduped BAM 7631024981500709065->-6807727459090442311 7631024981500709065->7987809479098050523 -4513268951765757555 chip.bam2ta_ctl 6515760301377168546 TAG-ALIGN -4513268951765757555->6515760301377168546 6515760301377168546->-9203536746656225100 3696296099036432226 Filt/deduped BAM 3696296099036432226->-4513268951765757555 3696296099036432226->7987809479098050523 -1492843956075518708 chip.bam2ta_ctl -1718360284898781752 TAG-ALIGN -1492843956075518708->-1718360284898781752 -1718360284898781752->-9203536746656225100 -8837703136151010440 Filt/deduped BAM -8837703136151010440->-1492843956075518708 -8837703136151010440->7987809479098050523 997951922365645289 chip.bam2ta_ctl 5028739083813354494 TAG-ALIGN 997951922365645289->5028739083813354494 5028739083813354494->-9203536746656225100 -877426605415253180 Filt/deduped BAM -877426605415253180->997951922365645289 -877426605415253180->7987809479098050523 3591475678918500702 chip.bam2ta_ctl 5751664283304983017 TAG-ALIGN 3591475678918500702->5751664283304983017 5751664283304983017->-9203536746656225100 -1208376126985280705 Filt/deduped BAM -1208376126985280705->3591475678918500702 -1208376126985280705->7987809479098050523 7495730446268485712 chip.bam2ta_ctl 6234013255994359920 TAG-ALIGN 7495730446268485712->6234013255994359920 6234013255994359920->-9203536746656225100 -2423492756856741591 Filt/deduped BAM -2423492756856741591->7495730446268485712 -2423492756856741591->7987809479098050523 4636968651158348214 chip.bam2ta_ctl -8249100709018851908 TAG-ALIGN 4636968651158348214->-8249100709018851908 -8249100709018851908->-9203536746656225100 9183409201516197218 Filt/deduped BAM 9183409201516197218->4636968651158348214 9183409201516197218->7987809479098050523 4046141661660632843 chip.bam2ta_ctl -8515839321217284262 TAG-ALIGN 4046141661660632843->-8515839321217284262 -8515839321217284262->-9203536746656225100 -153677994458303206 Filt/deduped BAM -153677994458303206->4046141661660632843 -153677994458303206->7987809479098050523 -3734468327432410133 chip.bam2ta_ctl 3623280799057828523 TAG-ALIGN -3734468327432410133->3623280799057828523 3623280799057828523->-9203536746656225100 2939076506714222668 Filt/deduped BAM 2939076506714222668->-3734468327432410133 2939076506714222668->7987809479098050523 642505287693547655 chip.bam2ta_ctl 7506355641433065821 TAG-ALIGN 642505287693547655->7506355641433065821 7506355641433065821->-9203536746656225100 4093047908854860969 Filt/deduped BAM 4093047908854860969->642505287693547655 4093047908854860969->7987809479098050523 -2403897561245222357 chip.bam2ta_ctl -7976533777264805169 TAG-ALIGN -2403897561245222357->-7976533777264805169 -7976533777264805169->-9203536746656225100 8906368745646534598 Filt/deduped BAM 8906368745646534598->-2403897561245222357 8906368745646534598->7987809479098050523 -6790290118514509220 chip.bam2ta_ctl 7230496300711640599 TAG-ALIGN -6790290118514509220->7230496300711640599 7230496300711640599->-9203536746656225100 -8095053079931123014 Filt/deduped BAM -8095053079931123014->-6790290118514509220 -8095053079931123014->7987809479098050523 -6377805942510119513 chip.bam2ta_ctl -7717092811371429332 TAG-ALIGN -6377805942510119513->-7717092811371429332 -7717092811371429332->-9203536746656225100 789461838745652717 Filt/deduped BAM 789461838745652717->-6377805942510119513 789461838745652717->7987809479098050523 4127707682430577676 chip.bam2ta_ctl -8215216747212708657 TAG-ALIGN 4127707682430577676->-8215216747212708657 -8215216747212708657->-9203536746656225100 -209303842881751216 Filt/deduped BAM -209303842881751216->4127707682430577676 -209303842881751216->7987809479098050523 -6054749194571359356 IDR Plot ppr 59071206055226171->-6054749194571359356 -8445815023081385589 IDR Peak ppr 59071206055226171->-8445815023081385589 -8445815023081385589->-1468063099303328291 4486999074490418118 IDR Plot rep1_vs_rep2 7857859195186177997->4486999074490418118 -3400253697566991744 IDR NPeak rep1_vs_rep2 7857859195186177997->-3400253697566991744 -3400253697566991744->-1468063099303328291 7511868989546103881 Overlap Peak rep1_vs_rep2 2031092787303920->7511868989546103881 7511868989546103881->-7916356297230875718 -8932031385423394708 Overlap Peak optimal -7916356297230875718->-8932031385423394708 4469344493309053386 Overlap reproducibility -7916356297230875718->4469344493309053386 -8906171082225474863 IDR Peak optimal -1468063099303328291->-8906171082225474863 -8433031044063443538 IDR reproducibility -1468063099303328291->-8433031044063443538 5936910194970002178 Overlap Peak ppr 6118007254740379923->5936910194970002178 5936910194970002178->-7916356297230875718 -9028698736537742918 JSD Plot 7987809479098050523->-9028698736537742918

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval.signal.bigwig?Expires=1601337139&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=PHc8oSjN%2Bd07N5LALZfyqtagpzytzCnuuNBi1NI9YAX5E0jCYKWuXgQlUvIMsN8JtR%2B7QEkQavPQo0OuoEAhInCoveYKnAkRkCRoD%2F%2FXVzHJfkS6Si3y2b%2B5%2FuJRTx6lq6HKHkv5Hdxc55bRO4SSosgJYNfY7q9Kwsi%2FXcqWYrWfFPZrGwafXj0Pr4DyUN7d3D7mbYjGGZunugQPqT%2FQjie1u5Do5BxdICJ3JBC8KDJHlSGBV3z8nGYZNMypyg4%2FXMx3C3hJgGerWyX4kViAvvaeUHUtv97VAgJIyORmdZHo9OuvcrinIOH%2Bs9VpLVsAZ4R%2BrPc8YLA2TsVfuERzEA%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.fc.signal.bigwig?Expires=1601337139&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=XR%2BvaEvuRCrl00VLejIMt2H4shnPXlM2jFUATWJu5lnchSTsjkirvXQgB0PvHtT6mYOy8EMMTfBseF7UppT9CleBHthOKJrI%2BmBy4GurfOWaMIqTjxV9dFMr%2FQmujXzoIbTbr3U6Geh2dcFgJ6VZsNIxxj%2FwnHo5hcpUDGkdO5fblZz0sM4JRnvC5G6FgJEbbJ3KYdzW8LcnQ4x%2BJiWYkfeK2LVjjPnpej2SL0s3aea0tO2cB4nLy2VQNwSq8FSZ7s6dywn%2BXpIXZ8Kej3EYgsCP3CvoUI0QjR9l7VHP2OKhpeFCC9AMIvb%2BJDeq%2F%2F%2FOh17r2%2FZvJCTW8bXwh1MNCg%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.601M.pval.signal.bigwig?Expires=1601337139&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=KMEOkBC2hdoTL0HXBAa54MzYzZjf8LYx4znDHxLI37uE9WqUtvY0cbrXr9Aceg8e%2B2Xb2awFxbxB5zCO03qWlukyhn97QaW7ZJ5UpF0Fc5BR2lOVWDT1NL2hYSJduWmJn8vda5iB81Jh%2FQa45FarWQYix%2BgI9vg2GJ336eblSmBDaRzPVdSq8grPnpHro%2FuV1HAjr9D9DRQOw0iUOM6%2BN9Myzpyghpg88p6YTJ%2Bv%2BDJBeE6xcHdmA15VnbzPiSEQe%2BznA8PCZ0FzUiEpB25hEqs%2BVrkt%2BPiybo3vvrDsnAIA62QLrxD5RLf3YLxKvTl%2FZFIwcyoHvPzK979p3pVA3w%3D%3D"
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