File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF022LNW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF022LNW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF022LNW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF022LNW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF022LNW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF896GER.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF896GER.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF896GER.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF896GER.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF896GER.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.601M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.601M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.601M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.601M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup.pr1_x_ctl.pooled.350M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup.pr2_x_ctl.pooled.350M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF022LNW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF022LNW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF022LNW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF022LNW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF022LNW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF022LNW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF896GER.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF896GER.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF896GER.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF896GER.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF896GER.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF896GER.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF022LNW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/b8b31374-81fd-4de6-b454-15976fd96e97/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.601M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.601M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF022LNW.crop_101-2bp.nodup_x_ctl.pooled.350M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF896GER.crop_101-2bp.nodup_x_ctl.pooled.251M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5017275011946002497 chip.macs2_signal_track_pooled -3851841994590141931 BW FC -5017275011946002497->-3851841994590141931 986724514342635411 BW p-val -5017275011946002497->986724514342635411 5278911335277806420 chip.call_peak_pooled 8099405252038204445 Peak (bfilt) 5278911335277806420->8099405252038204445 -4383691407642824742 Peak 5278911335277806420->-4383691407642824742 6740537043796842069 chip.idr_ppr -4383691407642824742->6740537043796842069 -4721489729160035535 chip.idr -4383691407642824742->-4721489729160035535 783256902146051994 chip.overlap -4383691407642824742->783256902146051994 6421087106768856763 chip.overlap_ppr -4383691407642824742->6421087106768856763 -6275829411541360065 chip.pool_ta -6991065079688343478 TAG-ALIGN -6275829411541360065->-6991065079688343478 -6991065079688343478->-5017275011946002497 -6991065079688343478->5278911335277806420 -6991065079688343478->6740537043796842069 -6991065079688343478->-4721489729160035535 -6991065079688343478->783256902146051994 -6991065079688343478->6421087106768856763 8318037816377959002 chip.call_peak -3452598988076110722 Peak (bfilt) 8318037816377959002->-3452598988076110722 -3628365432343607653 Peak 8318037816377959002->-3628365432343607653 -3628365432343607653->-4721489729160035535 -3628365432343607653->783256902146051994 8403839448242846749 chip.reproducibility_overlap -3628365432343607653->8403839448242846749 -2319206238840410430 chip.reproducibility_idr -3628365432343607653->-2319206238840410430 8949264236051669166 chip.bam2ta 6628753762077150720 TAG-ALIGN 8949264236051669166->6628753762077150720 6628753762077150720->-6275829411541360065 6628753762077150720->8318037816377959002 -87531540372451917 chip.macs2_signal_track 6628753762077150720->-87531540372451917 6628753762077150720->6740537043796842069 6628753762077150720->8403839448242846749 6628753762077150720->-2319206238840410430 6628753762077150720->6421087106768856763 3623422064607332223 chip.filter 8513261200747536604 SAMstats QC 3623422064607332223->8513261200747536604 8351559015377968300 Filt/deduped BAM 3623422064607332223->8351559015377968300 -1741812992185833010 LibCmplx QC 3623422064607332223->-1741812992185833010 8351559015377968300->8949264236051669166 -8123834210494411486 chip.jsd 8351559015377968300->-8123834210494411486 7143405115291866476 chip.align 7057500203658205144 SAMstats QC 7143405115291866476->7057500203658205144 614525640795738807 BAM 7143405115291866476->614525640795738807 614525640795738807->3623422064607332223 -4363449321018846121 chip.xcor 5191166687553959372 XCOR Plot -4363449321018846121->5191166687553959372 -8006285665474513382 BW FC -87531540372451917->-8006285665474513382 3285356462533842518 BW p-val -87531540372451917->3285356462533842518 1392155973170360007 FASTQ R1 (1) 1392155973170360007->7143405115291866476 1392155973170360007->-4363449321018846121 -6390822544264851463 FASTQ R2 (1) -6390822544264851463->7143405115291866476 4376467758878494579 chip.call_peak 6661814795458973104 Peak (bfilt) 4376467758878494579->6661814795458973104 -5298448096037159168 Peak 4376467758878494579->-5298448096037159168 -5298448096037159168->-4721489729160035535 -5298448096037159168->783256902146051994 -5298448096037159168->8403839448242846749 -5298448096037159168->-2319206238840410430 -2548871659596802883 chip.bam2ta -1499065983262088555 TAG-ALIGN -2548871659596802883->-1499065983262088555 -1499065983262088555->-6275829411541360065 -1499065983262088555->4376467758878494579 -3138462041818456902 chip.macs2_signal_track -1499065983262088555->-3138462041818456902 -1499065983262088555->6740537043796842069 -1499065983262088555->8403839448242846749 -1499065983262088555->-2319206238840410430 -1499065983262088555->6421087106768856763 2837627180184391277 chip.filter 3858096695988612603 SAMstats QC 2837627180184391277->3858096695988612603 3918130756408080191 Filt/deduped BAM 2837627180184391277->3918130756408080191 3824018513590282596 LibCmplx QC 2837627180184391277->3824018513590282596 3918130756408080191->-2548871659596802883 3918130756408080191->-8123834210494411486 -5910931398152124870 chip.align -5100368812811374533 SAMstats QC -5910931398152124870->-5100368812811374533 -7555336275914409998 BAM -5910931398152124870->-7555336275914409998 -7555336275914409998->2837627180184391277 2030939498648529684 chip.xcor 1505602870688470906 XCOR Plot 2030939498648529684->1505602870688470906 8821952245986411854 BW FC -3138462041818456902->8821952245986411854 2650326197234231891 BW p-val -3138462041818456902->2650326197234231891 -2174920993721543576 FASTQ R1 (1) -2174920993721543576->-5910931398152124870 -2174920993721543576->2030939498648529684 6649650465513793884 FASTQ R2 (1) 6649650465513793884->-5910931398152124870 -1939709234886392083 chip.pool_ta_ctl 165288068828896830 TAG-ALIGN -1939709234886392083->165288068828896830 165288068828896830->-5017275011946002497 165288068828896830->5278911335277806420 165288068828896830->8318037816377959002 165288068828896830->-87531540372451917 165288068828896830->4376467758878494579 165288068828896830->-3138462041818456902 165288068828896830->6740537043796842069 165288068828896830->8403839448242846749 165288068828896830->-2319206238840410430 165288068828896830->6421087106768856763 -1904413505253767889 chip.bam2ta_ctl -4359363554532006585 TAG-ALIGN -1904413505253767889->-4359363554532006585 -4359363554532006585->-1939709234886392083 -5960143021731620340 Filt/deduped BAM -5960143021731620340->-1904413505253767889 -5960143021731620340->-8123834210494411486 -5537616625913159756 chip.bam2ta_ctl 2345200543377264887 TAG-ALIGN -5537616625913159756->2345200543377264887 2345200543377264887->-1939709234886392083 9185779369464491056 Filt/deduped BAM 9185779369464491056->-5537616625913159756 9185779369464491056->-8123834210494411486 -1792385571512997338 chip.bam2ta_ctl 965292625913909895 TAG-ALIGN -1792385571512997338->965292625913909895 965292625913909895->-1939709234886392083 -7463741015521039225 Filt/deduped BAM -7463741015521039225->-1792385571512997338 -7463741015521039225->-8123834210494411486 -5715811699019851292 chip.bam2ta_ctl -8856204382380740064 TAG-ALIGN -5715811699019851292->-8856204382380740064 -8856204382380740064->-1939709234886392083 -8361677891804108565 Filt/deduped BAM -8361677891804108565->-5715811699019851292 -8361677891804108565->-8123834210494411486 -2536506520166344120 chip.bam2ta_ctl 3167791951165226235 TAG-ALIGN -2536506520166344120->3167791951165226235 3167791951165226235->-1939709234886392083 -3615795048205816889 Filt/deduped BAM -3615795048205816889->-2536506520166344120 -3615795048205816889->-8123834210494411486 -7049374098037605458 chip.bam2ta_ctl -6491151720633149275 TAG-ALIGN -7049374098037605458->-6491151720633149275 -6491151720633149275->-1939709234886392083 2199273812596932480 Filt/deduped BAM 2199273812596932480->-7049374098037605458 2199273812596932480->-8123834210494411486 -7416887930549728647 chip.bam2ta_ctl -3886780562197212833 TAG-ALIGN -7416887930549728647->-3886780562197212833 -3886780562197212833->-1939709234886392083 -8764160756754588300 Filt/deduped BAM -8764160756754588300->-7416887930549728647 -8764160756754588300->-8123834210494411486 -7496116344519345055 chip.bam2ta_ctl 2735641161303060976 TAG-ALIGN -7496116344519345055->2735641161303060976 2735641161303060976->-1939709234886392083 646951477406058186 Filt/deduped BAM 646951477406058186->-7496116344519345055 646951477406058186->-8123834210494411486 -5152068312514123100 chip.bam2ta_ctl 7794231183898790672 TAG-ALIGN -5152068312514123100->7794231183898790672 7794231183898790672->-1939709234886392083 531600415511297594 Filt/deduped BAM 531600415511297594->-5152068312514123100 531600415511297594->-8123834210494411486 6133266263714763951 chip.bam2ta_ctl -2298432958711942719 TAG-ALIGN 6133266263714763951->-2298432958711942719 -2298432958711942719->-1939709234886392083 -5477072623305617463 Filt/deduped BAM -5477072623305617463->6133266263714763951 -5477072623305617463->-8123834210494411486 -5731719493294341472 chip.bam2ta_ctl 1385064565852872219 TAG-ALIGN -5731719493294341472->1385064565852872219 1385064565852872219->-1939709234886392083 -2722897888358132695 Filt/deduped BAM -2722897888358132695->-5731719493294341472 -2722897888358132695->-8123834210494411486 6487658868247828965 chip.bam2ta_ctl 3514895843334070463 TAG-ALIGN 6487658868247828965->3514895843334070463 3514895843334070463->-1939709234886392083 -9019868001721280121 Filt/deduped BAM -9019868001721280121->6487658868247828965 -9019868001721280121->-8123834210494411486 7273022290740296159 chip.bam2ta_ctl 3721429619275866114 TAG-ALIGN 7273022290740296159->3721429619275866114 3721429619275866114->-1939709234886392083 -733421726197277649 Filt/deduped BAM -733421726197277649->7273022290740296159 -733421726197277649->-8123834210494411486 3644206095288413261 chip.bam2ta_ctl -1380703389997783367 TAG-ALIGN 3644206095288413261->-1380703389997783367 -1380703389997783367->-1939709234886392083 -4556270086205393993 Filt/deduped BAM -4556270086205393993->3644206095288413261 -4556270086205393993->-8123834210494411486 7985238365500865441 chip.bam2ta_ctl -8960205566666264121 TAG-ALIGN 7985238365500865441->-8960205566666264121 -8960205566666264121->-1939709234886392083 -4863551326284869556 Filt/deduped BAM -4863551326284869556->7985238365500865441 -4863551326284869556->-8123834210494411486 -1166528786332329555 chip.bam2ta_ctl -426390478458113039 TAG-ALIGN -1166528786332329555->-426390478458113039 -426390478458113039->-1939709234886392083 1989590870801080805 Filt/deduped BAM 1989590870801080805->-1166528786332329555 1989590870801080805->-8123834210494411486 509226781490745349 chip.bam2ta_ctl -7385388123117645921 TAG-ALIGN 509226781490745349->-7385388123117645921 -7385388123117645921->-1939709234886392083 -918615115906820110 Filt/deduped BAM -918615115906820110->509226781490745349 -918615115906820110->-8123834210494411486 1499786804563405033 chip.bam2ta_ctl -4238201120260872962 TAG-ALIGN 1499786804563405033->-4238201120260872962 -4238201120260872962->-1939709234886392083 4059246688438954186 Filt/deduped BAM 4059246688438954186->1499786804563405033 4059246688438954186->-8123834210494411486 -823428651520866282 chip.bam2ta_ctl -6839143360762890707 TAG-ALIGN -823428651520866282->-6839143360762890707 -6839143360762890707->-1939709234886392083 -3289456134789810515 Filt/deduped BAM -3289456134789810515->-823428651520866282 -3289456134789810515->-8123834210494411486 7887001157628932674 chip.bam2ta_ctl -188422661100508092 TAG-ALIGN 7887001157628932674->-188422661100508092 -188422661100508092->-1939709234886392083 -2629381114945386155 Filt/deduped BAM -2629381114945386155->7887001157628932674 -2629381114945386155->-8123834210494411486 -8664263195024651082 chip.bam2ta_ctl 4078024247646869691 TAG-ALIGN -8664263195024651082->4078024247646869691 4078024247646869691->-1939709234886392083 3722260013021865821 Filt/deduped BAM 3722260013021865821->-8664263195024651082 3722260013021865821->-8123834210494411486 8887185051194966547 chip.bam2ta_ctl 2452589639486796895 TAG-ALIGN 8887185051194966547->2452589639486796895 2452589639486796895->-1939709234886392083 7781557410889562239 Filt/deduped BAM 7781557410889562239->8887185051194966547 7781557410889562239->-8123834210494411486 -3119963179972139802 chip.bam2ta_ctl -7729389713591821783 TAG-ALIGN -3119963179972139802->-7729389713591821783 -7729389713591821783->-1939709234886392083 -8203887499931311603 Filt/deduped BAM -8203887499931311603->-3119963179972139802 -8203887499931311603->-8123834210494411486 -783057922427774450 chip.bam2ta_ctl -801926669771154072 TAG-ALIGN -783057922427774450->-801926669771154072 -801926669771154072->-1939709234886392083 7478448124600183385 Filt/deduped BAM 7478448124600183385->-783057922427774450 7478448124600183385->-8123834210494411486 -6213594581053593227 IDR Plot ppr 6740537043796842069->-6213594581053593227 -1411095861196238380 IDR Peak ppr 6740537043796842069->-1411095861196238380 -1411095861196238380->-2319206238840410430 -4195157915990661461 IDR Plot rep1_vs_rep2 -4721489729160035535->-4195157915990661461 2816690082853714290 IDR NPeak rep1_vs_rep2 -4721489729160035535->2816690082853714290 2816690082853714290->-2319206238840410430 5949481169850442746 Overlap Peak rep1_vs_rep2 783256902146051994->5949481169850442746 5949481169850442746->8403839448242846749 1227050386798635996 Overlap Peak optimal 8403839448242846749->1227050386798635996 1977523670403351293 Overlap reproducibility 8403839448242846749->1977523670403351293 4584509092668390150 IDR Peak optimal -2319206238840410430->4584509092668390150 1727883085745349006 IDR reproducibility -2319206238840410430->1727883085745349006 3289044160672491173 Overlap Peak ppr 6421087106768856763->3289044160672491173 3289044160672491173->8403839448242846749 2723172826580578152 JSD Plot -8123834210494411486->2723172826580578152

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/33aa51f5-55ff-437b-a112-9c25b0b188c5/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.601M.pval.signal.bigwig?Expires=1601334247&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=nW99aYqGIO1%2FPmVxkwpR77ITScYxAlMVz2%2FVVq5NucUiwO8pPabfMky4lDKRL1Wy53558QbTwHmlDwmCzClg19JtJHyhM6oklJiKlN2V2opOUMuCmEOtl77ooRJSpxHkAJDJ7jL%2B3DHovKpfP1F1zc2DrzbfWnl0nrWIk7nsnAYJZ6Qn82zVt43B3FsbKmMlHUL69Dehq320ByoDaiOVhmxZQxJBgMPwAfo9FhJBgT6GOnhnTKUd1Bytac6O5WegFhTV%2F4%2FXmNi1nb1fxTEg7SNfSldrWB1u4FZJ%2FLi3zPCXWQr5j8Nql1U1zUU9QLPMALOLq7r7ymv0rqqStPEQoQ%3D%3D"
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