File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF343SQT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF343SQT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF343SQT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF343SQT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF343SQT.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF161OGL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF161OGL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF161OGL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF161OGL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF161OGL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.637M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.637M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.637M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF343SQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF343SQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF343SQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF343SQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.318M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF343SQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF343SQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF343SQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF343SQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.318M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF161OGL.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF161OGL.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF161OGL.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF161OGL.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF161OGL.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF161OGL.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF161OGL.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF161OGL.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.637M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF343SQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.318M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF343SQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.318M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF343SQT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF343SQT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF343SQT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF343SQT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF343SQT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF343SQT.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF161OGL.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF161OGL.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF161OGL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF161OGL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF161OGL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF161OGL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF161OGL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF161OGL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9c577f53-231a-4acb-a957-c60d3504596e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF343SQT.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/ddc8a16a-1629-429d-b879-e6a91f2f6145/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.637M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c6e983a2-5434-4e76-8bf3-04e15194d286/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.637M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9c577f53-231a-4acb-a957-c60d3504596e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9c577f53-231a-4acb-a957-c60d3504596e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF343SQT.crop_101-2bp.nodup_x_ctl.pooled.318M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9c577f53-231a-4acb-a957-c60d3504596e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9c577f53-231a-4acb-a957-c60d3504596e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF161OGL.crop_101-2bp.nodup_x_ctl.pooled.319M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 7091895610213600755 chip.macs2_signal_track_pooled 6460312973405548302 BW FC 7091895610213600755->6460312973405548302 497244121227594826 BW p-val 7091895610213600755->497244121227594826 -5915723309692563984 chip.call_peak_pooled -3514669640338661400 Peak (bfilt) -5915723309692563984->-3514669640338661400 6334052850861075073 Peak -5915723309692563984->6334052850861075073 -8200475339636454111 chip.idr_ppr 6334052850861075073->-8200475339636454111 3068451375309405295 chip.idr 6334052850861075073->3068451375309405295 -6040604930560950227 chip.overlap 6334052850861075073->-6040604930560950227 -910431035431040634 chip.overlap_ppr 6334052850861075073->-910431035431040634 -4224885660099214695 chip.pool_ta 9039473283879393055 TAG-ALIGN -4224885660099214695->9039473283879393055 9039473283879393055->7091895610213600755 9039473283879393055->-5915723309692563984 9039473283879393055->-8200475339636454111 9039473283879393055->3068451375309405295 9039473283879393055->-6040604930560950227 9039473283879393055->-910431035431040634 3318653451699087177 chip.call_peak 2073464204900456575 Peak (bfilt) 3318653451699087177->2073464204900456575 -7832133504561009982 Peak 3318653451699087177->-7832133504561009982 -7832133504561009982->3068451375309405295 -7832133504561009982->-6040604930560950227 -5795048027885295138 chip.reproducibility_overlap -7832133504561009982->-5795048027885295138 -2552246381290471324 chip.reproducibility_idr -7832133504561009982->-2552246381290471324 6094035520077769770 chip.bam2ta -5510185223632773573 TAG-ALIGN 6094035520077769770->-5510185223632773573 -5510185223632773573->-4224885660099214695 -5510185223632773573->3318653451699087177 -3381420387451130641 chip.macs2_signal_track -5510185223632773573->-3381420387451130641 -5510185223632773573->-8200475339636454111 -5510185223632773573->-5795048027885295138 -5510185223632773573->-2552246381290471324 -5510185223632773573->-910431035431040634 -2631972262808670726 chip.filter -3460665597010083162 SAMstats QC -2631972262808670726->-3460665597010083162 -8796531634082185260 Filt/deduped BAM -2631972262808670726->-8796531634082185260 2781556696781604379 LibCmplx QC -2631972262808670726->2781556696781604379 -8796531634082185260->6094035520077769770 556968673232960916 chip.jsd -8796531634082185260->556968673232960916 7567727194477519499 chip.align -993585702049446825 SAMstats QC 7567727194477519499->-993585702049446825 -7355111941804767413 BAM 7567727194477519499->-7355111941804767413 -7355111941804767413->-2631972262808670726 498017675245247275 chip.xcor -4344699827855570545 XCOR Plot 498017675245247275->-4344699827855570545 -5645347745217946551 BW FC -3381420387451130641->-5645347745217946551 -8118880984018379283 BW p-val -3381420387451130641->-8118880984018379283 -1224871227131624468 FASTQ R1 (1) -1224871227131624468->7567727194477519499 -1224871227131624468->498017675245247275 -8442783411479755288 FASTQ R2 (1) -8442783411479755288->7567727194477519499 2573458959186042914 chip.call_peak 2474015598797657405 Peak (bfilt) 2573458959186042914->2474015598797657405 -6656536083189789880 Peak 2573458959186042914->-6656536083189789880 -6656536083189789880->3068451375309405295 -6656536083189789880->-6040604930560950227 -6656536083189789880->-5795048027885295138 -6656536083189789880->-2552246381290471324 -3723191406254331933 chip.bam2ta -5896409397823032076 TAG-ALIGN -3723191406254331933->-5896409397823032076 -5896409397823032076->-4224885660099214695 -5896409397823032076->2573458959186042914 -6965670086360777704 chip.macs2_signal_track -5896409397823032076->-6965670086360777704 -5896409397823032076->-8200475339636454111 -5896409397823032076->-5795048027885295138 -5896409397823032076->-2552246381290471324 -5896409397823032076->-910431035431040634 478371520712906112 chip.filter 5101380685722953685 SAMstats QC 478371520712906112->5101380685722953685 707592763552582227 Filt/deduped BAM 478371520712906112->707592763552582227 2362284730658436047 LibCmplx QC 478371520712906112->2362284730658436047 707592763552582227->-3723191406254331933 707592763552582227->556968673232960916 -1117683916747222947 chip.align 8741417183864047804 SAMstats QC -1117683916747222947->8741417183864047804 -1179740664618013492 BAM -1117683916747222947->-1179740664618013492 -1179740664618013492->478371520712906112 -5274024434390836709 chip.xcor 4458980593619751261 XCOR Plot -5274024434390836709->4458980593619751261 -7730044879353367345 BW FC -6965670086360777704->-7730044879353367345 -7899094821200021326 BW p-val -6965670086360777704->-7899094821200021326 5980502056272322980 FASTQ R1 (1) 5980502056272322980->-1117683916747222947 5980502056272322980->-5274024434390836709 5349764455582715305 FASTQ R2 (1) 5349764455582715305->-1117683916747222947 7343666912701302253 chip.pool_ta_ctl 4417184319343692612 TAG-ALIGN 7343666912701302253->4417184319343692612 4417184319343692612->7091895610213600755 4417184319343692612->-5915723309692563984 4417184319343692612->3318653451699087177 4417184319343692612->-3381420387451130641 4417184319343692612->2573458959186042914 4417184319343692612->-6965670086360777704 4417184319343692612->-8200475339636454111 4417184319343692612->-5795048027885295138 4417184319343692612->-2552246381290471324 4417184319343692612->-910431035431040634 5887846232136905048 chip.bam2ta_ctl -2082874663724796841 TAG-ALIGN 5887846232136905048->-2082874663724796841 -2082874663724796841->7343666912701302253 -8958108569432284094 Filt/deduped BAM -8958108569432284094->5887846232136905048 -8958108569432284094->556968673232960916 -6471460551481800624 chip.bam2ta_ctl 6356473891534317426 TAG-ALIGN -6471460551481800624->6356473891534317426 6356473891534317426->7343666912701302253 -4322126897422234338 Filt/deduped BAM -4322126897422234338->-6471460551481800624 -4322126897422234338->556968673232960916 3020066926400927615 chip.bam2ta_ctl -5864363692339181388 TAG-ALIGN 3020066926400927615->-5864363692339181388 -5864363692339181388->7343666912701302253 4772601498147832230 Filt/deduped BAM 4772601498147832230->3020066926400927615 4772601498147832230->556968673232960916 -496710057156617568 chip.bam2ta_ctl 4070619271564036897 TAG-ALIGN -496710057156617568->4070619271564036897 4070619271564036897->7343666912701302253 -441703087449686951 Filt/deduped BAM -441703087449686951->-496710057156617568 -441703087449686951->556968673232960916 -1978785141756002156 chip.bam2ta_ctl -1329052041274229216 TAG-ALIGN -1978785141756002156->-1329052041274229216 -1329052041274229216->7343666912701302253 1001017403438904743 Filt/deduped BAM 1001017403438904743->-1978785141756002156 1001017403438904743->556968673232960916 2342835212997663316 chip.bam2ta_ctl 5973016531725227530 TAG-ALIGN 2342835212997663316->5973016531725227530 5973016531725227530->7343666912701302253 8878322755198090358 Filt/deduped BAM 8878322755198090358->2342835212997663316 8878322755198090358->556968673232960916 -2719146671229776881 chip.bam2ta_ctl -2123372423124369893 TAG-ALIGN -2719146671229776881->-2123372423124369893 -2123372423124369893->7343666912701302253 -7671783193522626937 Filt/deduped BAM -7671783193522626937->-2719146671229776881 -7671783193522626937->556968673232960916 1271526778717897479 chip.bam2ta_ctl 8687081634432427977 TAG-ALIGN 1271526778717897479->8687081634432427977 8687081634432427977->7343666912701302253 -5494895411603995926 Filt/deduped BAM -5494895411603995926->1271526778717897479 -5494895411603995926->556968673232960916 3080110479356518208 chip.bam2ta_ctl -3950694892887427990 TAG-ALIGN 3080110479356518208->-3950694892887427990 -3950694892887427990->7343666912701302253 2239416121301287073 Filt/deduped BAM 2239416121301287073->3080110479356518208 2239416121301287073->556968673232960916 -2200840355004363726 chip.bam2ta_ctl -2382282893381264045 TAG-ALIGN -2200840355004363726->-2382282893381264045 -2382282893381264045->7343666912701302253 -8065756054514125445 Filt/deduped BAM -8065756054514125445->-2200840355004363726 -8065756054514125445->556968673232960916 -454248836091893539 chip.bam2ta_ctl -4875388578931151745 TAG-ALIGN -454248836091893539->-4875388578931151745 -4875388578931151745->7343666912701302253 -8845747351168821611 Filt/deduped BAM -8845747351168821611->-454248836091893539 -8845747351168821611->556968673232960916 -2396322593675736825 chip.bam2ta_ctl -6924444495694432846 TAG-ALIGN -2396322593675736825->-6924444495694432846 -6924444495694432846->7343666912701302253 239677759658904227 Filt/deduped BAM 239677759658904227->-2396322593675736825 239677759658904227->556968673232960916 4588295039127418957 chip.bam2ta_ctl 3986942505751907294 TAG-ALIGN 4588295039127418957->3986942505751907294 3986942505751907294->7343666912701302253 -1609806502135658640 Filt/deduped BAM -1609806502135658640->4588295039127418957 -1609806502135658640->556968673232960916 4760129392392311383 chip.bam2ta_ctl -5213409873427573314 TAG-ALIGN 4760129392392311383->-5213409873427573314 -5213409873427573314->7343666912701302253 -4409824488795760591 Filt/deduped BAM -4409824488795760591->4760129392392311383 -4409824488795760591->556968673232960916 -3873771325348207097 chip.bam2ta_ctl -3216372405071501849 TAG-ALIGN -3873771325348207097->-3216372405071501849 -3216372405071501849->7343666912701302253 1999370160404819595 Filt/deduped BAM 1999370160404819595->-3873771325348207097 1999370160404819595->556968673232960916 -2137047233578404945 chip.bam2ta_ctl 4977054310516397062 TAG-ALIGN -2137047233578404945->4977054310516397062 4977054310516397062->7343666912701302253 -1625165229527381565 Filt/deduped BAM -1625165229527381565->-2137047233578404945 -1625165229527381565->556968673232960916 3061808863488173410 chip.bam2ta_ctl -4520733139670543582 TAG-ALIGN 3061808863488173410->-4520733139670543582 -4520733139670543582->7343666912701302253 -4446284718859744921 Filt/deduped BAM -4446284718859744921->3061808863488173410 -4446284718859744921->556968673232960916 -2816705824537385706 chip.bam2ta_ctl 1827281578445931016 TAG-ALIGN -2816705824537385706->1827281578445931016 1827281578445931016->7343666912701302253 -7021187718264930270 Filt/deduped BAM -7021187718264930270->-2816705824537385706 -7021187718264930270->556968673232960916 -1722133691609362005 chip.bam2ta_ctl 1496188352705094113 TAG-ALIGN -1722133691609362005->1496188352705094113 1496188352705094113->7343666912701302253 -4106435872659113983 Filt/deduped BAM -4106435872659113983->-1722133691609362005 -4106435872659113983->556968673232960916 -2994558851492089754 chip.bam2ta_ctl 3678749193637864340 TAG-ALIGN -2994558851492089754->3678749193637864340 3678749193637864340->7343666912701302253 1053615877837079816 Filt/deduped BAM 1053615877837079816->-2994558851492089754 1053615877837079816->556968673232960916 -7751587897576851830 chip.bam2ta_ctl 6828473371599440510 TAG-ALIGN -7751587897576851830->6828473371599440510 6828473371599440510->7343666912701302253 -7607991797167094129 Filt/deduped BAM -7607991797167094129->-7751587897576851830 -7607991797167094129->556968673232960916 -6993497528857878779 chip.bam2ta_ctl -4709809051085932264 TAG-ALIGN -6993497528857878779->-4709809051085932264 -4709809051085932264->7343666912701302253 8225129737581603393 Filt/deduped BAM 8225129737581603393->-6993497528857878779 8225129737581603393->556968673232960916 324735842896262525 chip.bam2ta_ctl -3272082752799556132 TAG-ALIGN 324735842896262525->-3272082752799556132 -3272082752799556132->7343666912701302253 4592374056277303580 Filt/deduped BAM 4592374056277303580->324735842896262525 4592374056277303580->556968673232960916 -4943831241094008123 chip.bam2ta_ctl 3629018570581461592 TAG-ALIGN -4943831241094008123->3629018570581461592 3629018570581461592->7343666912701302253 -559152337054439373 Filt/deduped BAM -559152337054439373->-4943831241094008123 -559152337054439373->556968673232960916 -525034567539794497 IDR Plot ppr -8200475339636454111->-525034567539794497 4949101363256823593 IDR Peak ppr -8200475339636454111->4949101363256823593 4949101363256823593->-2552246381290471324 -5037275279436342970 IDR Plot rep1_vs_rep2 3068451375309405295->-5037275279436342970 783536316519391215 IDR NPeak rep1_vs_rep2 3068451375309405295->783536316519391215 783536316519391215->-2552246381290471324 -5717007572917945219 Overlap Peak rep1_vs_rep2 -6040604930560950227->-5717007572917945219 -5717007572917945219->-5795048027885295138 3523730751896575444 Overlap Peak optimal -5795048027885295138->3523730751896575444 8848275539468563780 Overlap reproducibility -5795048027885295138->8848275539468563780 3509392673520253154 IDR Peak optimal -2552246381290471324->3509392673520253154 -8034143057625742287 IDR reproducibility -2552246381290471324->-8034143057625742287 -922305377347883603 Overlap Peak ppr -910431035431040634->-922305377347883603 -922305377347883603->-5795048027885295138 2010977440165153632 JSD Plot 556968673232960916->2010977440165153632

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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