File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF280GIQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF280GIQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF280GIQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF280GIQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF280GIQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF950RDX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF950RDX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF950RDX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF950RDX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF950RDX.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.552M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.552M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.552M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF280GIQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF280GIQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF280GIQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF280GIQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF280GIQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF280GIQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF280GIQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF280GIQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF950RDX.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF950RDX.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF950RDX.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF950RDX.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF950RDX.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF950RDX.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF950RDX.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF950RDX.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.552M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF280GIQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF280GIQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF280GIQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF280GIQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF280GIQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF280GIQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF280GIQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF280GIQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF950RDX.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF950RDX.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF950RDX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF950RDX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF950RDX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF950RDX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF950RDX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF950RDX.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/fa97672b-b57f-45d0-b8f8-30098712c1b3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/fa97672b-b57f-45d0-b8f8-30098712c1b3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF280GIQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/67695b25-936b-4e2d-b462-f8c12b67c624/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.552M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.552M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF280GIQ.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF950RDX.crop_101-2bp.nodup_x_ctl.pooled.269M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2007201293420933268 chip.macs2_signal_track_pooled 5675177537765439869 BW FC 2007201293420933268->5675177537765439869 -3872158235451317068 BW p-val 2007201293420933268->-3872158235451317068 5068021257884736341 chip.call_peak_pooled -569137104236272036 Peak (bfilt) 5068021257884736341->-569137104236272036 -3042681635347218351 Peak 5068021257884736341->-3042681635347218351 -2997714103472423994 chip.idr_ppr -3042681635347218351->-2997714103472423994 8083626382663653075 chip.idr -3042681635347218351->8083626382663653075 -1714494955832163407 chip.overlap -3042681635347218351->-1714494955832163407 -5277137415283371801 chip.overlap_ppr -3042681635347218351->-5277137415283371801 -2756862180071102974 chip.pool_ta 3911501280020623885 TAG-ALIGN -2756862180071102974->3911501280020623885 3911501280020623885->2007201293420933268 3911501280020623885->5068021257884736341 3911501280020623885->-2997714103472423994 3911501280020623885->8083626382663653075 3911501280020623885->-1714494955832163407 3911501280020623885->-5277137415283371801 -7103974433995478994 chip.call_peak 344104757559067701 Peak (bfilt) -7103974433995478994->344104757559067701 -13227128882965335 Peak -7103974433995478994->-13227128882965335 -13227128882965335->8083626382663653075 -13227128882965335->-1714494955832163407 7392786585638335764 chip.reproducibility_overlap -13227128882965335->7392786585638335764 5343331112561279077 chip.reproducibility_idr -13227128882965335->5343331112561279077 -7093800468515618538 chip.bam2ta 6202184764581502016 TAG-ALIGN -7093800468515618538->6202184764581502016 6202184764581502016->-2756862180071102974 6202184764581502016->-7103974433995478994 121383710917786002 chip.macs2_signal_track 6202184764581502016->121383710917786002 6202184764581502016->-2997714103472423994 6202184764581502016->7392786585638335764 6202184764581502016->5343331112561279077 6202184764581502016->-5277137415283371801 -2962371014242303333 chip.filter -7465552074310429942 SAMstats QC -2962371014242303333->-7465552074310429942 -1316934980590049732 Filt/deduped BAM -2962371014242303333->-1316934980590049732 7412867099358437604 LibCmplx QC -2962371014242303333->7412867099358437604 -1316934980590049732->-7093800468515618538 4541602871472052364 chip.jsd -1316934980590049732->4541602871472052364 7044036764376282590 chip.align -7397450402108495592 SAMstats QC 7044036764376282590->-7397450402108495592 -8865726924278886286 BAM 7044036764376282590->-8865726924278886286 -8865726924278886286->-2962371014242303333 -539575610002630030 chip.xcor -3419062971712550295 XCOR Plot -539575610002630030->-3419062971712550295 1096930625678817352 BW FC 121383710917786002->1096930625678817352 6210291350183587258 BW p-val 121383710917786002->6210291350183587258 -2855543210905418637 FASTQ R1 (1) -2855543210905418637->7044036764376282590 -2855543210905418637->-539575610002630030 4437314699466087519 FASTQ R2 (1) 4437314699466087519->7044036764376282590 5063307134536689046 chip.call_peak 3484415808510961850 Peak (bfilt) 5063307134536689046->3484415808510961850 8942122982368077309 Peak 5063307134536689046->8942122982368077309 8942122982368077309->8083626382663653075 8942122982368077309->-1714494955832163407 8942122982368077309->7392786585638335764 8942122982368077309->5343331112561279077 2611152372794731769 chip.bam2ta -4117069460496226340 TAG-ALIGN 2611152372794731769->-4117069460496226340 -4117069460496226340->-2756862180071102974 -4117069460496226340->5063307134536689046 3015483053764794191 chip.macs2_signal_track -4117069460496226340->3015483053764794191 -4117069460496226340->-2997714103472423994 -4117069460496226340->7392786585638335764 -4117069460496226340->5343331112561279077 -4117069460496226340->-5277137415283371801 6872545269690813894 chip.filter 8822267784255075251 SAMstats QC 6872545269690813894->8822267784255075251 -827275455863409156 Filt/deduped BAM 6872545269690813894->-827275455863409156 -6762486962679375750 LibCmplx QC 6872545269690813894->-6762486962679375750 -827275455863409156->2611152372794731769 -827275455863409156->4541602871472052364 2514760818947573422 chip.align 4701807191597749675 SAMstats QC 2514760818947573422->4701807191597749675 -4002202074117268912 BAM 2514760818947573422->-4002202074117268912 -4002202074117268912->6872545269690813894 -6833185738591560287 chip.xcor 7001825349479211347 XCOR Plot -6833185738591560287->7001825349479211347 -6144058559215007915 BW FC 3015483053764794191->-6144058559215007915 -2322946096702803077 BW p-val 3015483053764794191->-2322946096702803077 7755079727898647163 FASTQ R1 (1) 7755079727898647163->2514760818947573422 7755079727898647163->-6833185738591560287 5048792079723695666 FASTQ R2 (1) 5048792079723695666->2514760818947573422 -6549657260608562737 chip.pool_ta_ctl -2555704821492604475 TAG-ALIGN -6549657260608562737->-2555704821492604475 -2555704821492604475->2007201293420933268 -2555704821492604475->5068021257884736341 -2555704821492604475->-7103974433995478994 -2555704821492604475->121383710917786002 -2555704821492604475->5063307134536689046 -2555704821492604475->3015483053764794191 -2555704821492604475->-2997714103472423994 -2555704821492604475->7392786585638335764 -2555704821492604475->5343331112561279077 -2555704821492604475->-5277137415283371801 -5686487974218092283 chip.bam2ta_ctl -8425000764347378092 TAG-ALIGN -5686487974218092283->-8425000764347378092 -8425000764347378092->-6549657260608562737 8977638571920185899 Filt/deduped BAM 8977638571920185899->-5686487974218092283 8977638571920185899->4541602871472052364 -5826545540301963292 chip.bam2ta_ctl -9209599710173704957 TAG-ALIGN -5826545540301963292->-9209599710173704957 -9209599710173704957->-6549657260608562737 1383137244636902052 Filt/deduped BAM 1383137244636902052->-5826545540301963292 1383137244636902052->4541602871472052364 -1440598419229642498 chip.bam2ta_ctl -1479957693466832543 TAG-ALIGN -1440598419229642498->-1479957693466832543 -1479957693466832543->-6549657260608562737 2956655647475196873 Filt/deduped BAM 2956655647475196873->-1440598419229642498 2956655647475196873->4541602871472052364 -2708091311042643095 chip.bam2ta_ctl 1292815115946352280 TAG-ALIGN -2708091311042643095->1292815115946352280 1292815115946352280->-6549657260608562737 -6108976173215789386 Filt/deduped BAM -6108976173215789386->-2708091311042643095 -6108976173215789386->4541602871472052364 -4021529243373611448 chip.bam2ta_ctl 886511200000343527 TAG-ALIGN -4021529243373611448->886511200000343527 886511200000343527->-6549657260608562737 6936322108538336003 Filt/deduped BAM 6936322108538336003->-4021529243373611448 6936322108538336003->4541602871472052364 -8678838384878031930 chip.bam2ta_ctl 3962874239610052859 TAG-ALIGN -8678838384878031930->3962874239610052859 3962874239610052859->-6549657260608562737 -6491217227306221590 Filt/deduped BAM -6491217227306221590->-8678838384878031930 -6491217227306221590->4541602871472052364 -6489688685562482801 chip.bam2ta_ctl -6293030931497527870 TAG-ALIGN -6489688685562482801->-6293030931497527870 -6293030931497527870->-6549657260608562737 7690293870220506953 Filt/deduped BAM 7690293870220506953->-6489688685562482801 7690293870220506953->4541602871472052364 -6251071948410876551 chip.bam2ta_ctl 1973361286873266077 TAG-ALIGN -6251071948410876551->1973361286873266077 1973361286873266077->-6549657260608562737 8001437724599966413 Filt/deduped BAM 8001437724599966413->-6251071948410876551 8001437724599966413->4541602871472052364 5553780518814147075 chip.bam2ta_ctl 1386875803737564557 TAG-ALIGN 5553780518814147075->1386875803737564557 1386875803737564557->-6549657260608562737 898298688822013586 Filt/deduped BAM 898298688822013586->5553780518814147075 898298688822013586->4541602871472052364 -4923797403167003839 chip.bam2ta_ctl 4634336453498769290 TAG-ALIGN -4923797403167003839->4634336453498769290 4634336453498769290->-6549657260608562737 -4456151155985957794 Filt/deduped BAM -4456151155985957794->-4923797403167003839 -4456151155985957794->4541602871472052364 -4037595790446109264 chip.bam2ta_ctl -4555152727075526311 TAG-ALIGN -4037595790446109264->-4555152727075526311 -4555152727075526311->-6549657260608562737 -888486446608244421 Filt/deduped BAM -888486446608244421->-4037595790446109264 -888486446608244421->4541602871472052364 -4165773608108923895 chip.bam2ta_ctl 576436776761114014 TAG-ALIGN -4165773608108923895->576436776761114014 576436776761114014->-6549657260608562737 -3461223085029515584 Filt/deduped BAM -3461223085029515584->-4165773608108923895 -3461223085029515584->4541602871472052364 2708755966137241191 chip.bam2ta_ctl 1178045395850793976 TAG-ALIGN 2708755966137241191->1178045395850793976 1178045395850793976->-6549657260608562737 7724152799504385953 Filt/deduped BAM 7724152799504385953->2708755966137241191 7724152799504385953->4541602871472052364 -829491139795617595 chip.bam2ta_ctl 1416661335902138810 TAG-ALIGN -829491139795617595->1416661335902138810 1416661335902138810->-6549657260608562737 -3954784734791341986 Filt/deduped BAM -3954784734791341986->-829491139795617595 -3954784734791341986->4541602871472052364 4807917957278767784 chip.bam2ta_ctl -3482322444307308044 TAG-ALIGN 4807917957278767784->-3482322444307308044 -3482322444307308044->-6549657260608562737 -1182357544600688128 Filt/deduped BAM -1182357544600688128->4807917957278767784 -1182357544600688128->4541602871472052364 -1987974658332771291 chip.bam2ta_ctl -1643693624859159847 TAG-ALIGN -1987974658332771291->-1643693624859159847 -1643693624859159847->-6549657260608562737 -9149148192277720995 Filt/deduped BAM -9149148192277720995->-1987974658332771291 -9149148192277720995->4541602871472052364 -2396636848373691962 chip.bam2ta_ctl -9218702145754912192 TAG-ALIGN -2396636848373691962->-9218702145754912192 -9218702145754912192->-6549657260608562737 -6121323012099334572 Filt/deduped BAM -6121323012099334572->-2396636848373691962 -6121323012099334572->4541602871472052364 -7001854543586733978 chip.bam2ta_ctl 6929187369376175155 TAG-ALIGN -7001854543586733978->6929187369376175155 6929187369376175155->-6549657260608562737 -2671836043479576402 Filt/deduped BAM -2671836043479576402->-7001854543586733978 -2671836043479576402->4541602871472052364 7637958978367694531 chip.bam2ta_ctl 533475076745890519 TAG-ALIGN 7637958978367694531->533475076745890519 533475076745890519->-6549657260608562737 -3027185698875287686 Filt/deduped BAM -3027185698875287686->7637958978367694531 -3027185698875287686->4541602871472052364 7678226922224386644 chip.bam2ta_ctl -4448106759902559584 TAG-ALIGN 7678226922224386644->-4448106759902559584 -4448106759902559584->-6549657260608562737 6990036940314357643 Filt/deduped BAM 6990036940314357643->7678226922224386644 6990036940314357643->4541602871472052364 2831358878772482566 chip.bam2ta_ctl -3254078918531438987 TAG-ALIGN 2831358878772482566->-3254078918531438987 -3254078918531438987->-6549657260608562737 -934432703962528537 Filt/deduped BAM -934432703962528537->2831358878772482566 -934432703962528537->4541602871472052364 881382420297831769 chip.bam2ta_ctl -6968549131979999501 TAG-ALIGN 881382420297831769->-6968549131979999501 -6968549131979999501->-6549657260608562737 3535057910430135457 Filt/deduped BAM 3535057910430135457->881382420297831769 3535057910430135457->4541602871472052364 -4606802777655958542 chip.bam2ta_ctl -3776219653583368472 TAG-ALIGN -4606802777655958542->-3776219653583368472 -3776219653583368472->-6549657260608562737 -7176992119633002122 Filt/deduped BAM -7176992119633002122->-4606802777655958542 -7176992119633002122->4541602871472052364 8868331829049550706 chip.bam2ta_ctl 1242561090494566209 TAG-ALIGN 8868331829049550706->1242561090494566209 1242561090494566209->-6549657260608562737 5128462917898040262 Filt/deduped BAM 5128462917898040262->8868331829049550706 5128462917898040262->4541602871472052364 4666672653829074574 IDR Plot ppr -2997714103472423994->4666672653829074574 3376163760791774952 IDR Peak ppr -2997714103472423994->3376163760791774952 3376163760791774952->5343331112561279077 396012277633383180 IDR Plot rep1_vs_rep2 8083626382663653075->396012277633383180 1815350455756133484 IDR NPeak rep1_vs_rep2 8083626382663653075->1815350455756133484 1815350455756133484->5343331112561279077 2441506243398974028 Overlap Peak rep1_vs_rep2 -1714494955832163407->2441506243398974028 2441506243398974028->7392786585638335764 -2074130500802294491 Overlap Peak optimal 7392786585638335764->-2074130500802294491 3131893673726772077 Overlap reproducibility 7392786585638335764->3131893673726772077 5851836330322069476 IDR Peak optimal 5343331112561279077->5851836330322069476 -6667927071740541597 IDR reproducibility 5343331112561279077->-6667927071740541597 -2100460255733351985 Overlap Peak ppr -5277137415283371801->-2100460255733351985 -2100460255733351985->7392786585638335764 4008599838149291821 JSD Plot 4541602871472052364->4008599838149291821

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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