File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF706OYX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF706OYX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF706OYX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF706OYX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF706OYX.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF292AJW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF292AJW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF292AJW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF292AJW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF292AJW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF706OYX.crop_101-2bp.nodup.pr1_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF706OYX.crop_101-2bp.nodup.pr1_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF706OYX.crop_101-2bp.nodup.pr1_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF706OYX.crop_101-2bp.nodup.pr1_x_ctl.pooled.278M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF706OYX.crop_101-2bp.nodup.pr2_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF706OYX.crop_101-2bp.nodup.pr2_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF706OYX.crop_101-2bp.nodup.pr2_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF706OYX.crop_101-2bp.nodup.pr2_x_ctl.pooled.278M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF292AJW.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF292AJW.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF292AJW.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF292AJW.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF292AJW.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF292AJW.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF292AJW.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF292AJW.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF706OYX.crop_101-2bp.nodup.pr1_x_ctl.pooled.278M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF706OYX.crop_101-2bp.nodup.pr2_x_ctl.pooled.278M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF706OYX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF706OYX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF706OYX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF706OYX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF706OYX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF706OYX.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF292AJW.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF292AJW.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF292AJW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF292AJW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF292AJW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF292AJW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF292AJW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF292AJW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF706OYX.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/c89636aa-64ab-4f17-ae78-a6819b3cc135/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.531M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.531M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF706OYX.crop_101-2bp.nodup_x_ctl.pooled.278M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF292AJW.crop_101-2bp.nodup_x_ctl.pooled.252M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1018180129972356657 chip.macs2_signal_track_pooled 7106117108705513076 BW FC -1018180129972356657->7106117108705513076 7888239271734151984 BW p-val -1018180129972356657->7888239271734151984 4350399726133937112 chip.call_peak_pooled -5035358638552153784 Peak (bfilt) 4350399726133937112->-5035358638552153784 6142246752433305977 Peak 4350399726133937112->6142246752433305977 -3677973345299145014 chip.idr_ppr 6142246752433305977->-3677973345299145014 -5899965963272171613 chip.idr 6142246752433305977->-5899965963272171613 -2320467775600661435 chip.overlap 6142246752433305977->-2320467775600661435 5679819133216312880 chip.overlap_ppr 6142246752433305977->5679819133216312880 5636916800042079305 chip.pool_ta -4156760730938614296 TAG-ALIGN 5636916800042079305->-4156760730938614296 -4156760730938614296->-1018180129972356657 -4156760730938614296->4350399726133937112 -4156760730938614296->-3677973345299145014 -4156760730938614296->-5899965963272171613 -4156760730938614296->-2320467775600661435 -4156760730938614296->5679819133216312880 -1863898208642726042 chip.call_peak -2585343023157422963 Peak (bfilt) -1863898208642726042->-2585343023157422963 1072127324567751765 Peak -1863898208642726042->1072127324567751765 1072127324567751765->-5899965963272171613 1072127324567751765->-2320467775600661435 -5765575021548056987 chip.reproducibility_overlap 1072127324567751765->-5765575021548056987 -9102681516074853774 chip.reproducibility_idr 1072127324567751765->-9102681516074853774 -8615270879687390914 chip.bam2ta 7380204714928419916 TAG-ALIGN -8615270879687390914->7380204714928419916 7380204714928419916->5636916800042079305 7380204714928419916->-1863898208642726042 2309148950346916691 chip.macs2_signal_track 7380204714928419916->2309148950346916691 7380204714928419916->-3677973345299145014 7380204714928419916->-5765575021548056987 7380204714928419916->-9102681516074853774 7380204714928419916->5679819133216312880 -9059260388397453751 chip.filter -5563714899350572814 SAMstats QC -9059260388397453751->-5563714899350572814 4272287365542127680 Filt/deduped BAM -9059260388397453751->4272287365542127680 -8789722348006626314 LibCmplx QC -9059260388397453751->-8789722348006626314 4272287365542127680->-8615270879687390914 -4186015994335011586 chip.jsd 4272287365542127680->-4186015994335011586 -2319202902236460711 chip.align -501187356480877793 SAMstats QC -2319202902236460711->-501187356480877793 -6406809494459504011 BAM -2319202902236460711->-6406809494459504011 -6406809494459504011->-9059260388397453751 -775451255121566678 chip.xcor -2470417399024372128 XCOR Plot -775451255121566678->-2470417399024372128 -9205060859674136430 BW FC 2309148950346916691->-9205060859674136430 898552408112155875 BW p-val 2309148950346916691->898552408112155875 -7680863062321430097 FASTQ R1 (1) -7680863062321430097->-2319202902236460711 -7680863062321430097->-775451255121566678 3585792709575934567 FASTQ R2 (1) 3585792709575934567->-2319202902236460711 2301323168052305031 chip.call_peak -8071124313504010496 Peak (bfilt) 2301323168052305031->-8071124313504010496 1770860993272906622 Peak 2301323168052305031->1770860993272906622 1770860993272906622->-5899965963272171613 1770860993272906622->-2320467775600661435 1770860993272906622->-5765575021548056987 1770860993272906622->-9102681516074853774 1377531996773409618 chip.bam2ta 6356430621009893517 TAG-ALIGN 1377531996773409618->6356430621009893517 6356430621009893517->5636916800042079305 6356430621009893517->2301323168052305031 -1236273497601296083 chip.macs2_signal_track 6356430621009893517->-1236273497601296083 6356430621009893517->-3677973345299145014 6356430621009893517->-5765575021548056987 6356430621009893517->-9102681516074853774 6356430621009893517->5679819133216312880 -8377537401990319980 chip.filter 70330721320563218 SAMstats QC -8377537401990319980->70330721320563218 7648892478966554980 Filt/deduped BAM -8377537401990319980->7648892478966554980 -2740604684345158889 LibCmplx QC -8377537401990319980->-2740604684345158889 7648892478966554980->1377531996773409618 7648892478966554980->-4186015994335011586 -5980429724800481267 chip.align -8451248398131206894 SAMstats QC -5980429724800481267->-8451248398131206894 2310472657462644143 BAM -5980429724800481267->2310472657462644143 2310472657462644143->-8377537401990319980 6231790021472806721 chip.xcor 4701179661596839606 XCOR Plot 6231790021472806721->4701179661596839606 -438679686020925688 BW FC -1236273497601296083->-438679686020925688 -6609725389612961123 BW p-val -1236273497601296083->-6609725389612961123 -4132605440291009751 FASTQ R1 (1) -4132605440291009751->-5980429724800481267 -4132605440291009751->6231790021472806721 7319928729102505560 FASTQ R2 (1) 7319928729102505560->-5980429724800481267 9028318448652136817 chip.pool_ta_ctl -4237352391330901718 TAG-ALIGN 9028318448652136817->-4237352391330901718 -4237352391330901718->-1018180129972356657 -4237352391330901718->4350399726133937112 -4237352391330901718->-1863898208642726042 -4237352391330901718->2309148950346916691 -4237352391330901718->2301323168052305031 -4237352391330901718->-1236273497601296083 -4237352391330901718->-3677973345299145014 -4237352391330901718->-5765575021548056987 -4237352391330901718->-9102681516074853774 -4237352391330901718->5679819133216312880 5692259010752754098 chip.bam2ta_ctl 6517986589572876136 TAG-ALIGN 5692259010752754098->6517986589572876136 6517986589572876136->9028318448652136817 -1542668769201497795 Filt/deduped BAM -1542668769201497795->5692259010752754098 -1542668769201497795->-4186015994335011586 5009289302836486694 chip.bam2ta_ctl 8719364308076018615 TAG-ALIGN 5009289302836486694->8719364308076018615 8719364308076018615->9028318448652136817 -8766975740907471925 Filt/deduped BAM -8766975740907471925->5009289302836486694 -8766975740907471925->-4186015994335011586 -9174159410217677867 chip.bam2ta_ctl -7683459603005774514 TAG-ALIGN -9174159410217677867->-7683459603005774514 -7683459603005774514->9028318448652136817 -5795882949580334450 Filt/deduped BAM -5795882949580334450->-9174159410217677867 -5795882949580334450->-4186015994335011586 -6865395850147959837 chip.bam2ta_ctl -2926484817699435452 TAG-ALIGN -6865395850147959837->-2926484817699435452 -2926484817699435452->9028318448652136817 -8927092721437916191 Filt/deduped BAM -8927092721437916191->-6865395850147959837 -8927092721437916191->-4186015994335011586 7163029294754174752 chip.bam2ta_ctl -2648848917477215824 TAG-ALIGN 7163029294754174752->-2648848917477215824 -2648848917477215824->9028318448652136817 7072980083376803959 Filt/deduped BAM 7072980083376803959->7163029294754174752 7072980083376803959->-4186015994335011586 -2476047288172111967 chip.bam2ta_ctl 1303272843979015418 TAG-ALIGN -2476047288172111967->1303272843979015418 1303272843979015418->9028318448652136817 182999789211489119 Filt/deduped BAM 182999789211489119->-2476047288172111967 182999789211489119->-4186015994335011586 -5285303204600723520 chip.bam2ta_ctl -8417006253503093093 TAG-ALIGN -5285303204600723520->-8417006253503093093 -8417006253503093093->9028318448652136817 -6742646888595400428 Filt/deduped BAM -6742646888595400428->-5285303204600723520 -6742646888595400428->-4186015994335011586 -501161011423805499 chip.bam2ta_ctl -8634087181860884533 TAG-ALIGN -501161011423805499->-8634087181860884533 -8634087181860884533->9028318448652136817 -7757665551115550694 Filt/deduped BAM -7757665551115550694->-501161011423805499 -7757665551115550694->-4186015994335011586 -1824094974514870995 chip.bam2ta_ctl 5625545409638469991 TAG-ALIGN -1824094974514870995->5625545409638469991 5625545409638469991->9028318448652136817 -328782641577280333 Filt/deduped BAM -328782641577280333->-1824094974514870995 -328782641577280333->-4186015994335011586 4919277839465861005 chip.bam2ta_ctl 7651477449793367444 TAG-ALIGN 4919277839465861005->7651477449793367444 7651477449793367444->9028318448652136817 7118218368554293833 Filt/deduped BAM 7118218368554293833->4919277839465861005 7118218368554293833->-4186015994335011586 -7874204261707522977 chip.bam2ta_ctl 8728865635460084244 TAG-ALIGN -7874204261707522977->8728865635460084244 8728865635460084244->9028318448652136817 -6348550705253070546 Filt/deduped BAM -6348550705253070546->-7874204261707522977 -6348550705253070546->-4186015994335011586 -5852419759799126918 chip.bam2ta_ctl 5386667263864500993 TAG-ALIGN -5852419759799126918->5386667263864500993 5386667263864500993->9028318448652136817 356467020863082295 Filt/deduped BAM 356467020863082295->-5852419759799126918 356467020863082295->-4186015994335011586 -6405372144142082068 chip.bam2ta_ctl -8031920386473549840 TAG-ALIGN -6405372144142082068->-8031920386473549840 -8031920386473549840->9028318448652136817 -6702142639658017093 Filt/deduped BAM -6702142639658017093->-6405372144142082068 -6702142639658017093->-4186015994335011586 -8705917957622159352 chip.bam2ta_ctl 8715756022605973847 TAG-ALIGN -8705917957622159352->8715756022605973847 8715756022605973847->9028318448652136817 -8577464594572396027 Filt/deduped BAM -8577464594572396027->-8705917957622159352 -8577464594572396027->-4186015994335011586 -8454235214981471176 chip.bam2ta_ctl -2374461768972471291 TAG-ALIGN -8454235214981471176->-2374461768972471291 -2374461768972471291->9028318448652136817 -954697084803024970 Filt/deduped BAM -954697084803024970->-8454235214981471176 -954697084803024970->-4186015994335011586 -5786367036747548163 chip.bam2ta_ctl 5620230785944328130 TAG-ALIGN -5786367036747548163->5620230785944328130 5620230785944328130->9028318448652136817 -6043898550453994555 Filt/deduped BAM -6043898550453994555->-5786367036747548163 -6043898550453994555->-4186015994335011586 -430515769458089478 chip.bam2ta_ctl -2176953127471421366 TAG-ALIGN -430515769458089478->-2176953127471421366 -2176953127471421366->9028318448652136817 -1911070071731071481 Filt/deduped BAM -1911070071731071481->-430515769458089478 -1911070071731071481->-4186015994335011586 -6759862063223118373 chip.bam2ta_ctl 5131661021654076365 TAG-ALIGN -6759862063223118373->5131661021654076365 5131661021654076365->9028318448652136817 1917865355578902556 Filt/deduped BAM 1917865355578902556->-6759862063223118373 1917865355578902556->-4186015994335011586 7529444239148112645 chip.bam2ta_ctl 2392111583559440260 TAG-ALIGN 7529444239148112645->2392111583559440260 2392111583559440260->9028318448652136817 -5616516506533734616 Filt/deduped BAM -5616516506533734616->7529444239148112645 -5616516506533734616->-4186015994335011586 1028461046963229861 chip.bam2ta_ctl 6034105743516734598 TAG-ALIGN 1028461046963229861->6034105743516734598 6034105743516734598->9028318448652136817 7183820194757677757 Filt/deduped BAM 7183820194757677757->1028461046963229861 7183820194757677757->-4186015994335011586 -6683427250926697925 chip.bam2ta_ctl 8740371903537680446 TAG-ALIGN -6683427250926697925->8740371903537680446 8740371903537680446->9028318448652136817 9142721814135798162 Filt/deduped BAM 9142721814135798162->-6683427250926697925 9142721814135798162->-4186015994335011586 8332191412301304932 chip.bam2ta_ctl 1713652252665546713 TAG-ALIGN 8332191412301304932->1713652252665546713 1713652252665546713->9028318448652136817 -6738579984019831737 Filt/deduped BAM -6738579984019831737->8332191412301304932 -6738579984019831737->-4186015994335011586 -2040961074468205128 chip.bam2ta_ctl 5277416703979774147 TAG-ALIGN -2040961074468205128->5277416703979774147 5277416703979774147->9028318448652136817 -6991783501617637788 Filt/deduped BAM -6991783501617637788->-2040961074468205128 -6991783501617637788->-4186015994335011586 -8910195427502696474 chip.bam2ta_ctl -6753252690205245895 TAG-ALIGN -8910195427502696474->-6753252690205245895 -6753252690205245895->9028318448652136817 -5975202190443085825 Filt/deduped BAM -5975202190443085825->-8910195427502696474 -5975202190443085825->-4186015994335011586 -3608250835761899191 IDR Plot ppr -3677973345299145014->-3608250835761899191 -363721222163773704 IDR Peak ppr -3677973345299145014->-363721222163773704 -363721222163773704->-9102681516074853774 -6266209461433070973 IDR Plot rep1_vs_rep2 -5899965963272171613->-6266209461433070973 8980887242518871924 IDR NPeak rep1_vs_rep2 -5899965963272171613->8980887242518871924 8980887242518871924->-9102681516074853774 8881617944685342303 Overlap Peak rep1_vs_rep2 -2320467775600661435->8881617944685342303 8881617944685342303->-5765575021548056987 -1072647316576142417 Overlap Peak optimal -5765575021548056987->-1072647316576142417 -5443285362593308482 Overlap reproducibility -5765575021548056987->-5443285362593308482 5375723008077218460 IDR Peak optimal -9102681516074853774->5375723008077218460 3078882574531446104 IDR reproducibility -9102681516074853774->3078882574531446104 8466653547050407338 Overlap Peak ppr 5679819133216312880->8466653547050407338 8466653547050407338->-5765575021548056987 -5782289117212904998 JSD Plot -4186015994335011586->-5782289117212904998

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/9f534577-5638-408d-9ee5-40b912522cb7/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.531M.pval.signal.bigwig?Expires=1601334700&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Uzqsn4vLDgq0y1szFK9dfjJwstqkBqzILQNthpwYMjXPKvmMCI7oDl%2FmDfbydgrXArzS9TZqCumVKOMXFoSEC5XfJ9i%2BGC5xYAyaz6LgPbD1R0W5nxbjDQQN27i41EhQGyj9FlBag3%2FwKffiGwdoFEUvJ0KD7HDSZzaQoJKHZGu9vQIlh1OJpgxFk8dSdrHGJ5LYQ0sFp2RPPPAK4hHbJs50BhcWda7c2py25kFhN1jEF2cvG1geLJmV8Bse6JqJNyWg3Ezk%2FqYIaJfLd4i52dYFlsZ3dujyB920eYD4byycB%2B7Shdae2138kYZ%2Bq3%2BJgm8ywjfg%2FyG%2FTVFxcaX7sA%3D%3D"
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