File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2bbc1e7f-3933-4c02-8ec9-ede594314af5/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF095MZW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF095MZW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF095MZW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF095MZW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF095MZW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF074LAP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF074LAP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF074LAP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF074LAP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF074LAP.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF095MZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF095MZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF095MZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF095MZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF095MZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF095MZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF095MZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF095MZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF074LAP.crop_101-2bp.nodup.pr1_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF074LAP.crop_101-2bp.nodup.pr1_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF074LAP.crop_101-2bp.nodup.pr1_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF074LAP.crop_101-2bp.nodup.pr1_x_ctl.pooled.306M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF074LAP.crop_101-2bp.nodup.pr2_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF074LAP.crop_101-2bp.nodup.pr2_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF074LAP.crop_101-2bp.nodup.pr2_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF074LAP.crop_101-2bp.nodup.pr2_x_ctl.pooled.306M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF095MZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF095MZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF095MZW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF095MZW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF095MZW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF095MZW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF095MZW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF095MZW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF074LAP.crop_101-2bp.nodup.pr1_x_ctl.pooled.306M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF074LAP.crop_101-2bp.nodup.pr2_x_ctl.pooled.306M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF074LAP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF074LAP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF074LAP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF074LAP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF074LAP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF074LAP.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/2dae14ee-d0b8-4c1c-abb8-b91fc4a44025/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF095MZW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF095MZW.crop_101-2bp.nodup_x_ctl.pooled.260M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c97db430-6852-4b69-ab20-44ba5a62c8a6/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF074LAP.crop_101-2bp.nodup_x_ctl.pooled.306M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 -1165459800056915754 chip.macs2_signal_track_pooled 2878358751475538709 BW FC -1165459800056915754->2878358751475538709 9131372428615764999 BW p-val -1165459800056915754->9131372428615764999 -6629109933384620843 chip.call_peak_pooled 4810014262973151978 Peak (bfilt) -6629109933384620843->4810014262973151978 -3132454752077300353 Peak -6629109933384620843->-3132454752077300353 -8247347277857153547 chip.idr_ppr -3132454752077300353->-8247347277857153547 5843195947507778758 chip.idr -3132454752077300353->5843195947507778758 903318520597723599 chip.overlap -3132454752077300353->903318520597723599 8880091296804549765 chip.overlap_ppr -3132454752077300353->8880091296804549765 5657368322299691116 chip.pool_ta 4550198979296144120 TAG-ALIGN 5657368322299691116->4550198979296144120 4550198979296144120->-1165459800056915754 4550198979296144120->-6629109933384620843 4550198979296144120->-8247347277857153547 4550198979296144120->5843195947507778758 4550198979296144120->903318520597723599 4550198979296144120->8880091296804549765 3777002093433958279 chip.call_peak -6942523257565796413 Peak (bfilt) 3777002093433958279->-6942523257565796413 4370449531437773414 Peak 3777002093433958279->4370449531437773414 4370449531437773414->5843195947507778758 4370449531437773414->903318520597723599 -3329473088991181427 chip.reproducibility_overlap 4370449531437773414->-3329473088991181427 7730093430250742739 chip.reproducibility_idr 4370449531437773414->7730093430250742739 7965029005791916979 chip.bam2ta -3398713955712904086 TAG-ALIGN 7965029005791916979->-3398713955712904086 -3398713955712904086->5657368322299691116 -3398713955712904086->3777002093433958279 -586437234959736252 chip.macs2_signal_track -3398713955712904086->-586437234959736252 -3398713955712904086->-8247347277857153547 -3398713955712904086->-3329473088991181427 -3398713955712904086->7730093430250742739 -3398713955712904086->8880091296804549765 -3713630223217923086 chip.filter 1580992372103571116 SAMstats QC -3713630223217923086->1580992372103571116 2771100026994373506 Filt/deduped BAM -3713630223217923086->2771100026994373506 3380719304666778755 LibCmplx QC -3713630223217923086->3380719304666778755 2771100026994373506->7965029005791916979 -1119263504618374702 chip.jsd 2771100026994373506->-1119263504618374702 -8648017281686466876 chip.align -3867060422727461336 SAMstats QC -8648017281686466876->-3867060422727461336 2050415976192235814 BAM -8648017281686466876->2050415976192235814 2050415976192235814->-3713630223217923086 6000592177531125866 chip.xcor 6916010654821783619 XCOR Plot 6000592177531125866->6916010654821783619 -4529505162844436192 BW FC -586437234959736252->-4529505162844436192 337527468891896425 BW p-val -586437234959736252->337527468891896425 -1420187943057352171 FASTQ R1 (1) -1420187943057352171->-8648017281686466876 -1420187943057352171->6000592177531125866 6902043501402181296 FASTQ R2 (1) 6902043501402181296->-8648017281686466876 5724292740205172678 chip.call_peak -6803745954311897145 Peak (bfilt) 5724292740205172678->-6803745954311897145 977116804004305605 Peak 5724292740205172678->977116804004305605 977116804004305605->5843195947507778758 977116804004305605->903318520597723599 977116804004305605->-3329473088991181427 977116804004305605->7730093430250742739 -8709960497944484831 chip.bam2ta 8351982295011711103 TAG-ALIGN -8709960497944484831->8351982295011711103 8351982295011711103->5657368322299691116 8351982295011711103->5724292740205172678 -6395720826339986871 chip.macs2_signal_track 8351982295011711103->-6395720826339986871 8351982295011711103->-8247347277857153547 8351982295011711103->-3329473088991181427 8351982295011711103->7730093430250742739 8351982295011711103->8880091296804549765 63023467023147121 chip.filter -3738950946927397391 SAMstats QC 63023467023147121->-3738950946927397391 -1739755215175192908 Filt/deduped BAM 63023467023147121->-1739755215175192908 -7565269535315741983 LibCmplx QC 63023467023147121->-7565269535315741983 -1739755215175192908->-8709960497944484831 -1739755215175192908->-1119263504618374702 4243954223182640904 chip.align -7248147091588680125 SAMstats QC 4243954223182640904->-7248147091588680125 -4691543021692740783 BAM 4243954223182640904->-4691543021692740783 -4691543021692740783->63023467023147121 8984755401062254226 chip.xcor -3359120495906464645 XCOR Plot 8984755401062254226->-3359120495906464645 -3013418258837924638 BW FC -6395720826339986871->-3013418258837924638 4395269311008771463 BW p-val -6395720826339986871->4395269311008771463 5989315245425229212 FASTQ R1 (1) 5989315245425229212->4243954223182640904 5989315245425229212->8984755401062254226 -4976738921610260556 FASTQ R2 (1) -4976738921610260556->4243954223182640904 -6132084367767693438 chip.pool_ta_ctl 669001550408523231 TAG-ALIGN -6132084367767693438->669001550408523231 669001550408523231->-1165459800056915754 669001550408523231->-6629109933384620843 669001550408523231->3777002093433958279 669001550408523231->-586437234959736252 669001550408523231->5724292740205172678 669001550408523231->-6395720826339986871 669001550408523231->-8247347277857153547 669001550408523231->-3329473088991181427 669001550408523231->7730093430250742739 669001550408523231->8880091296804549765 8408281732216320902 chip.bam2ta_ctl 4374147582693857384 TAG-ALIGN 8408281732216320902->4374147582693857384 4374147582693857384->-6132084367767693438 3728460842792932848 Filt/deduped BAM 3728460842792932848->8408281732216320902 3728460842792932848->-1119263504618374702 9012798744684832628 chip.bam2ta_ctl 567045060707428581 TAG-ALIGN 9012798744684832628->567045060707428581 567045060707428581->-6132084367767693438 1322753127689434934 Filt/deduped BAM 1322753127689434934->9012798744684832628 1322753127689434934->-1119263504618374702 -5829460099737982320 chip.bam2ta_ctl 3692625000589156555 TAG-ALIGN -5829460099737982320->3692625000589156555 3692625000589156555->-6132084367767693438 6909639475592131941 Filt/deduped BAM 6909639475592131941->-5829460099737982320 6909639475592131941->-1119263504618374702 3545701570303668990 chip.bam2ta_ctl -8995938072882307480 TAG-ALIGN 3545701570303668990->-8995938072882307480 -8995938072882307480->-6132084367767693438 -5112480717306107259 Filt/deduped BAM -5112480717306107259->3545701570303668990 -5112480717306107259->-1119263504618374702 3838545188159289119 chip.bam2ta_ctl 4043074038081816597 TAG-ALIGN 3838545188159289119->4043074038081816597 4043074038081816597->-6132084367767693438 -3324476288668269670 Filt/deduped BAM -3324476288668269670->3838545188159289119 -3324476288668269670->-1119263504618374702 8473885049811457050 chip.bam2ta_ctl 1710223990232854387 TAG-ALIGN 8473885049811457050->1710223990232854387 1710223990232854387->-6132084367767693438 3635095818270947642 Filt/deduped BAM 3635095818270947642->8473885049811457050 3635095818270947642->-1119263504618374702 -2149485405040575088 IDR Plot ppr -8247347277857153547->-2149485405040575088 -7495563373770477661 IDR Peak ppr -8247347277857153547->-7495563373770477661 -7495563373770477661->7730093430250742739 -6926008840520336322 IDR Plot rep1_vs_rep2 5843195947507778758->-6926008840520336322 -6287006563529212322 IDR NPeak rep1_vs_rep2 5843195947507778758->-6287006563529212322 -6287006563529212322->7730093430250742739 -4743100136019002088 Overlap Peak rep1_vs_rep2 903318520597723599->-4743100136019002088 -4743100136019002088->-3329473088991181427 1691358515973845664 Overlap Peak optimal -3329473088991181427->1691358515973845664 6541751571858201002 Overlap reproducibility -3329473088991181427->6541751571858201002 -5562899003839339317 IDR Peak optimal 7730093430250742739->-5562899003839339317 670541575132301904 IDR reproducibility 7730093430250742739->670541575132301904 -5225715845354348394 Overlap Peak ppr 8880091296804549765->-5225715845354348394 -5225715845354348394->-3329473088991181427 -4169488001424236029 JSD Plot -1119263504618374702->-4169488001424236029

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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