File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF964ODQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF964ODQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF964ODQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF964ODQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF964ODQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF890MKU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF890MKU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF890MKU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF890MKU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF890MKU.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.695M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.695M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.695M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF964ODQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF964ODQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF964ODQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF964ODQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF964ODQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF964ODQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF964ODQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF964ODQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF890MKU.crop_101-2bp.nodup.pr1_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF890MKU.crop_101-2bp.nodup.pr1_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF890MKU.crop_101-2bp.nodup.pr1_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF890MKU.crop_101-2bp.nodup.pr1_x_ctl.pooled.376M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF890MKU.crop_101-2bp.nodup.pr2_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF890MKU.crop_101-2bp.nodup.pr2_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF890MKU.crop_101-2bp.nodup.pr2_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF890MKU.crop_101-2bp.nodup.pr2_x_ctl.pooled.376M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.695M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF964ODQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF964ODQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF964ODQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF964ODQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF964ODQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF964ODQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF964ODQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF964ODQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF890MKU.crop_101-2bp.nodup.pr1_x_ctl.pooled.376M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF890MKU.crop_101-2bp.nodup.pr2_x_ctl.pooled.376M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF890MKU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF890MKU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF890MKU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF890MKU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF890MKU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF890MKU.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF964ODQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/fc9d73ce-3be2-4a09-9bff-abcc8b9be598/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.695M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.695M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF964ODQ.crop_101-2bp.nodup_x_ctl.pooled.319M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f67baf31-00d0-45b9-b3f6-975532ea007e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF890MKU.crop_101-2bp.nodup_x_ctl.pooled.376M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3206135527187243775 chip.macs2_signal_track_pooled 2261872059327386829 BW FC 3206135527187243775->2261872059327386829 -7374243236166655897 BW p-val 3206135527187243775->-7374243236166655897 6421848672699175095 chip.call_peak_pooled -771343592435761040 Peak (bfilt) 6421848672699175095->-771343592435761040 7512334766857177075 Peak 6421848672699175095->7512334766857177075 -8787607928951531381 chip.idr_ppr 7512334766857177075->-8787607928951531381 -6897125911172933577 chip.idr 7512334766857177075->-6897125911172933577 1454430761778777031 chip.overlap 7512334766857177075->1454430761778777031 4273363779708048402 chip.overlap_ppr 7512334766857177075->4273363779708048402 -5877142879179212775 chip.pool_ta 8081579083668302896 TAG-ALIGN -5877142879179212775->8081579083668302896 8081579083668302896->3206135527187243775 8081579083668302896->6421848672699175095 8081579083668302896->-8787607928951531381 8081579083668302896->-6897125911172933577 8081579083668302896->1454430761778777031 8081579083668302896->4273363779708048402 4784984576043880485 chip.call_peak -9073143951479646687 Peak (bfilt) 4784984576043880485->-9073143951479646687 4181387353085168643 Peak 4784984576043880485->4181387353085168643 4181387353085168643->-6897125911172933577 4181387353085168643->1454430761778777031 -2469890712817830499 chip.reproducibility_overlap 4181387353085168643->-2469890712817830499 -5802333978132980828 chip.reproducibility_idr 4181387353085168643->-5802333978132980828 -7389665115661495084 chip.bam2ta 5193993919846440900 TAG-ALIGN -7389665115661495084->5193993919846440900 5193993919846440900->-5877142879179212775 5193993919846440900->4784984576043880485 7870336092009204207 chip.macs2_signal_track 5193993919846440900->7870336092009204207 5193993919846440900->-8787607928951531381 5193993919846440900->-2469890712817830499 5193993919846440900->-5802333978132980828 5193993919846440900->4273363779708048402 -8073375019639765185 chip.filter 2619809877024869637 SAMstats QC -8073375019639765185->2619809877024869637 6875005845517876514 Filt/deduped BAM -8073375019639765185->6875005845517876514 -8824947326389107278 LibCmplx QC -8073375019639765185->-8824947326389107278 6875005845517876514->-7389665115661495084 -8511288797933280432 chip.jsd 6875005845517876514->-8511288797933280432 7074899823505377904 chip.align -8877588128101768099 SAMstats QC 7074899823505377904->-8877588128101768099 -4364100387345450239 BAM 7074899823505377904->-4364100387345450239 -4364100387345450239->-8073375019639765185 4894350265485057243 chip.xcor -1233063636627848671 XCOR Plot 4894350265485057243->-1233063636627848671 6280951509461669763 BW FC 7870336092009204207->6280951509461669763 7399715326548222505 BW p-val 7870336092009204207->7399715326548222505 8333360693528245864 FASTQ R1 (1) 8333360693528245864->7074899823505377904 8333360693528245864->4894350265485057243 -3971847932375398554 FASTQ R2 (1) -3971847932375398554->7074899823505377904 8320870700646306407 chip.call_peak 4627235743777709003 Peak (bfilt) 8320870700646306407->4627235743777709003 -8451514934483676568 Peak 8320870700646306407->-8451514934483676568 -8451514934483676568->-6897125911172933577 -8451514934483676568->1454430761778777031 -8451514934483676568->-2469890712817830499 -8451514934483676568->-5802333978132980828 5547791509392705018 chip.bam2ta 7970891199429806325 TAG-ALIGN 5547791509392705018->7970891199429806325 7970891199429806325->-5877142879179212775 7970891199429806325->8320870700646306407 -8402750964584952978 chip.macs2_signal_track 7970891199429806325->-8402750964584952978 7970891199429806325->-8787607928951531381 7970891199429806325->-2469890712817830499 7970891199429806325->-5802333978132980828 7970891199429806325->4273363779708048402 1108664618146120162 chip.filter -604608626888649303 SAMstats QC 1108664618146120162->-604608626888649303 8624826111198925008 Filt/deduped BAM 1108664618146120162->8624826111198925008 -2703597885989672978 LibCmplx QC 1108664618146120162->-2703597885989672978 8624826111198925008->5547791509392705018 8624826111198925008->-8511288797933280432 3750108963837018244 chip.align 3765978529132998483 SAMstats QC 3750108963837018244->3765978529132998483 2853861390193013626 BAM 3750108963837018244->2853861390193013626 2853861390193013626->1108664618146120162 -4207156135711950774 chip.xcor 5644945532116036815 XCOR Plot -4207156135711950774->5644945532116036815 -442990486163696142 BW FC -8402750964584952978->-442990486163696142 -2874308329279305191 BW p-val -8402750964584952978->-2874308329279305191 -2417366445592997489 FASTQ R1 (1) -2417366445592997489->3750108963837018244 -2417366445592997489->-4207156135711950774 -3398327319439618373 FASTQ R2 (1) -3398327319439618373->3750108963837018244 7505576556156750834 chip.pool_ta_ctl -5283682274858507532 TAG-ALIGN 7505576556156750834->-5283682274858507532 -5283682274858507532->3206135527187243775 -5283682274858507532->6421848672699175095 -5283682274858507532->4784984576043880485 -5283682274858507532->7870336092009204207 -5283682274858507532->8320870700646306407 -5283682274858507532->-8402750964584952978 -5283682274858507532->-8787607928951531381 -5283682274858507532->-2469890712817830499 -5283682274858507532->-5802333978132980828 -5283682274858507532->4273363779708048402 -1279603686392212357 chip.bam2ta_ctl -6174061948582829987 TAG-ALIGN -1279603686392212357->-6174061948582829987 -6174061948582829987->7505576556156750834 -906840408063244334 Filt/deduped BAM -906840408063244334->-1279603686392212357 -906840408063244334->-8511288797933280432 -5033990584631824619 chip.bam2ta_ctl -6192729247003770620 TAG-ALIGN -5033990584631824619->-6192729247003770620 -6192729247003770620->7505576556156750834 3043323814027846284 Filt/deduped BAM 3043323814027846284->-5033990584631824619 3043323814027846284->-8511288797933280432 -9015170299645686162 chip.bam2ta_ctl -8919832307059682977 TAG-ALIGN -9015170299645686162->-8919832307059682977 -8919832307059682977->7505576556156750834 -4771279677973815753 Filt/deduped BAM -4771279677973815753->-9015170299645686162 -4771279677973815753->-8511288797933280432 -5554360629588845237 chip.bam2ta_ctl -7519784218516092786 TAG-ALIGN -5554360629588845237->-7519784218516092786 -7519784218516092786->7505576556156750834 -373297548413834886 Filt/deduped BAM -373297548413834886->-5554360629588845237 -373297548413834886->-8511288797933280432 -7839511723995288824 chip.bam2ta_ctl 8349818101462334685 TAG-ALIGN -7839511723995288824->8349818101462334685 8349818101462334685->7505576556156750834 1298984893473631605 Filt/deduped BAM 1298984893473631605->-7839511723995288824 1298984893473631605->-8511288797933280432 5456537237630861360 chip.bam2ta_ctl 4321642803487873124 TAG-ALIGN 5456537237630861360->4321642803487873124 4321642803487873124->7505576556156750834 8333487087303980625 Filt/deduped BAM 8333487087303980625->5456537237630861360 8333487087303980625->-8511288797933280432 8485686124564077997 chip.bam2ta_ctl 7309690491226326192 TAG-ALIGN 8485686124564077997->7309690491226326192 7309690491226326192->7505576556156750834 8357928454223541029 Filt/deduped BAM 8357928454223541029->8485686124564077997 8357928454223541029->-8511288797933280432 569839936428952551 chip.bam2ta_ctl -388454010809128383 TAG-ALIGN 569839936428952551->-388454010809128383 -388454010809128383->7505576556156750834 -3851919539615267241 Filt/deduped BAM -3851919539615267241->569839936428952551 -3851919539615267241->-8511288797933280432 -1247781696388443399 chip.bam2ta_ctl 8058067124720778658 TAG-ALIGN -1247781696388443399->8058067124720778658 8058067124720778658->7505576556156750834 155290054648426009 Filt/deduped BAM 155290054648426009->-1247781696388443399 155290054648426009->-8511288797933280432 8157941274990790943 chip.bam2ta_ctl 6685667625368773357 TAG-ALIGN 8157941274990790943->6685667625368773357 6685667625368773357->7505576556156750834 -6441729228277616767 Filt/deduped BAM -6441729228277616767->8157941274990790943 -6441729228277616767->-8511288797933280432 8745019211969184960 chip.bam2ta_ctl 4238326683390383221 TAG-ALIGN 8745019211969184960->4238326683390383221 4238326683390383221->7505576556156750834 1703280852370485199 Filt/deduped BAM 1703280852370485199->8745019211969184960 1703280852370485199->-8511288797933280432 -7905091607646868744 chip.bam2ta_ctl -1983818787786769437 TAG-ALIGN -7905091607646868744->-1983818787786769437 -1983818787786769437->7505576556156750834 2956753051009255974 Filt/deduped BAM 2956753051009255974->-7905091607646868744 2956753051009255974->-8511288797933280432 848333926931600373 chip.bam2ta_ctl -6945273061815761197 TAG-ALIGN 848333926931600373->-6945273061815761197 -6945273061815761197->7505576556156750834 6724933526335898038 Filt/deduped BAM 6724933526335898038->848333926931600373 6724933526335898038->-8511288797933280432 -2124252696357333140 chip.bam2ta_ctl 3057432239047987518 TAG-ALIGN -2124252696357333140->3057432239047987518 3057432239047987518->7505576556156750834 6720542486891483287 Filt/deduped BAM 6720542486891483287->-2124252696357333140 6720542486891483287->-8511288797933280432 8253133634805255510 chip.bam2ta_ctl -6814865269266203827 TAG-ALIGN 8253133634805255510->-6814865269266203827 -6814865269266203827->7505576556156750834 -6617498266775594599 Filt/deduped BAM -6617498266775594599->8253133634805255510 -6617498266775594599->-8511288797933280432 4922594407082229262 chip.bam2ta_ctl 1855122481925150177 TAG-ALIGN 4922594407082229262->1855122481925150177 1855122481925150177->7505576556156750834 211689863245889378 Filt/deduped BAM 211689863245889378->4922594407082229262 211689863245889378->-8511288797933280432 8109677977630294124 chip.bam2ta_ctl 4554901014330597979 TAG-ALIGN 8109677977630294124->4554901014330597979 4554901014330597979->7505576556156750834 6258080966818814347 Filt/deduped BAM 6258080966818814347->8109677977630294124 6258080966818814347->-8511288797933280432 -4364196292658391636 chip.bam2ta_ctl -3223746248079669534 TAG-ALIGN -4364196292658391636->-3223746248079669534 -3223746248079669534->7505576556156750834 547985155687618327 Filt/deduped BAM 547985155687618327->-4364196292658391636 547985155687618327->-8511288797933280432 -6707425519445891360 chip.bam2ta_ctl -7618111223570666912 TAG-ALIGN -6707425519445891360->-7618111223570666912 -7618111223570666912->7505576556156750834 1412367170198442192 Filt/deduped BAM 1412367170198442192->-6707425519445891360 1412367170198442192->-8511288797933280432 -496658182998138182 chip.bam2ta_ctl 8208937845273785327 TAG-ALIGN -496658182998138182->8208937845273785327 8208937845273785327->7505576556156750834 6933759336092808912 Filt/deduped BAM 6933759336092808912->-496658182998138182 6933759336092808912->-8511288797933280432 3681863946629234411 chip.bam2ta_ctl 1016031484310405451 TAG-ALIGN 3681863946629234411->1016031484310405451 1016031484310405451->7505576556156750834 -2257833528641697068 Filt/deduped BAM -2257833528641697068->3681863946629234411 -2257833528641697068->-8511288797933280432 -273840743011981307 chip.bam2ta_ctl 4169807210179365772 TAG-ALIGN -273840743011981307->4169807210179365772 4169807210179365772->7505576556156750834 -2602094894432758136 Filt/deduped BAM -2602094894432758136->-273840743011981307 -2602094894432758136->-8511288797933280432 5043412124306707963 chip.bam2ta_ctl -5707264157743440268 TAG-ALIGN 5043412124306707963->-5707264157743440268 -5707264157743440268->7505576556156750834 -8611004636272334641 Filt/deduped BAM -8611004636272334641->5043412124306707963 -8611004636272334641->-8511288797933280432 3777447310562120350 chip.bam2ta_ctl -2969830742830841989 TAG-ALIGN 3777447310562120350->-2969830742830841989 -2969830742830841989->7505576556156750834 -7297612774089450508 Filt/deduped BAM -7297612774089450508->3777447310562120350 -7297612774089450508->-8511288797933280432 -8433696906538128144 IDR Plot ppr -8787607928951531381->-8433696906538128144 -5922207104387679946 IDR Peak ppr -8787607928951531381->-5922207104387679946 -5922207104387679946->-5802333978132980828 6602747864307399454 IDR Plot rep1_vs_rep2 -6897125911172933577->6602747864307399454 6897621835044633270 IDR NPeak rep1_vs_rep2 -6897125911172933577->6897621835044633270 6897621835044633270->-5802333978132980828 761748116540799702 Overlap Peak rep1_vs_rep2 1454430761778777031->761748116540799702 761748116540799702->-2469890712817830499 -5641351652371246997 Overlap Peak optimal -2469890712817830499->-5641351652371246997 642456088204525095 Overlap reproducibility -2469890712817830499->642456088204525095 8678045259493309359 IDR Peak optimal -5802333978132980828->8678045259493309359 2736293655334125106 IDR reproducibility -5802333978132980828->2736293655334125106 3549251854601888677 Overlap Peak ppr 4273363779708048402->3549251854601888677 3549251854601888677->-2469890712817830499 1538386988451125873 JSD Plot -8511288797933280432->1538386988451125873

UCSC browser tracks

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