File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF590EUS.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF590EUS.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF590EUS.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF590EUS.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF590EUS.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF469HPU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF469HPU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469HPU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469HPU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF469HPU.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.436M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.436M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.436M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.436M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.436M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.436M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.436M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF590EUS.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF590EUS.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF590EUS.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF590EUS.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF590EUS.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF590EUS.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF469HPU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF469HPU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF469HPU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF469HPU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469HPU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469HPU.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF590EUS.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.436M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.436M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5547172444718949335 chip.macs2_signal_track_pooled 5692530706308769853 BW FC -5547172444718949335->5692530706308769853 -5863038203262936931 BW p-val -5547172444718949335->-5863038203262936931 -7230073886312263277 chip.call_peak_pooled -9100781601337107389 Peak (bfilt) -7230073886312263277->-9100781601337107389 -8696006422016475685 Peak -7230073886312263277->-8696006422016475685 6484423711961806201 chip.idr_ppr -8696006422016475685->6484423711961806201 7521093471738910437 chip.idr -8696006422016475685->7521093471738910437 2330327758786984588 chip.overlap -8696006422016475685->2330327758786984588 -6197832167616005984 chip.overlap_ppr -8696006422016475685->-6197832167616005984 6056316222367365008 chip.pool_ta 6533088642757558692 TAG-ALIGN 6056316222367365008->6533088642757558692 6533088642757558692->-5547172444718949335 6533088642757558692->-7230073886312263277 6533088642757558692->6484423711961806201 6533088642757558692->7521093471738910437 6533088642757558692->2330327758786984588 6533088642757558692->-6197832167616005984 5564275287787138318 chip.call_peak -6931865813150335604 Peak (bfilt) 5564275287787138318->-6931865813150335604 -4090308429139544193 Peak 5564275287787138318->-4090308429139544193 -4090308429139544193->7521093471738910437 -4090308429139544193->2330327758786984588 -1592159809363231526 chip.reproducibility_overlap -4090308429139544193->-1592159809363231526 3335385286176365132 chip.reproducibility_idr -4090308429139544193->3335385286176365132 471830174203767103 chip.bam2ta 7135266472273551614 TAG-ALIGN 471830174203767103->7135266472273551614 7135266472273551614->6056316222367365008 7135266472273551614->5564275287787138318 4544526326736769858 chip.macs2_signal_track 7135266472273551614->4544526326736769858 7135266472273551614->6484423711961806201 7135266472273551614->-1592159809363231526 7135266472273551614->3335385286176365132 7135266472273551614->-6197832167616005984 -482864149390910284 chip.filter -2031289199865890884 SAMstats QC -482864149390910284->-2031289199865890884 8407103767057196379 Filt/deduped BAM -482864149390910284->8407103767057196379 -7282389326749986406 LibCmplx QC -482864149390910284->-7282389326749986406 8407103767057196379->471830174203767103 5290843538056965587 chip.jsd 8407103767057196379->5290843538056965587 -8830785535047844803 chip.align -2572317984105267969 SAMstats QC -8830785535047844803->-2572317984105267969 615582015662625269 BAM -8830785535047844803->615582015662625269 615582015662625269->-482864149390910284 4870021069587049898 chip.xcor -7735703424114328845 XCOR Plot 4870021069587049898->-7735703424114328845 -667391679631448397 BW FC 4544526326736769858->-667391679631448397 -5329989442540313893 BW p-val 4544526326736769858->-5329989442540313893 -5123517944866490721 FASTQ R1 (1) -5123517944866490721->-8830785535047844803 -5123517944866490721->4870021069587049898 -3312094477122829576 FASTQ R2 (1) -3312094477122829576->-8830785535047844803 3028398939558456283 chip.call_peak -4323641086601558303 Peak (bfilt) 3028398939558456283->-4323641086601558303 5582101359561879577 Peak 3028398939558456283->5582101359561879577 5582101359561879577->7521093471738910437 5582101359561879577->2330327758786984588 5582101359561879577->-1592159809363231526 5582101359561879577->3335385286176365132 -8312343282727653672 chip.bam2ta -5268440281653692312 TAG-ALIGN -8312343282727653672->-5268440281653692312 -5268440281653692312->6056316222367365008 -5268440281653692312->3028398939558456283 -1980302565217781555 chip.macs2_signal_track -5268440281653692312->-1980302565217781555 -5268440281653692312->6484423711961806201 -5268440281653692312->-1592159809363231526 -5268440281653692312->3335385286176365132 -5268440281653692312->-6197832167616005984 -2685346844605457428 chip.filter -8505038451557897697 SAMstats QC -2685346844605457428->-8505038451557897697 -3679109523920335999 Filt/deduped BAM -2685346844605457428->-3679109523920335999 5324575991276673566 LibCmplx QC -2685346844605457428->5324575991276673566 -3679109523920335999->-8312343282727653672 -3679109523920335999->5290843538056965587 -6194206714706874713 chip.align 3137771114598224657 SAMstats QC -6194206714706874713->3137771114598224657 6624914655437427454 BAM -6194206714706874713->6624914655437427454 6624914655437427454->-2685346844605457428 -1099418133482020418 chip.xcor 2551404239370036260 XCOR Plot -1099418133482020418->2551404239370036260 -4718693516903361173 BW FC -1980302565217781555->-4718693516903361173 1815571208735517952 BW p-val -1980302565217781555->1815571208735517952 2082195443224542401 FASTQ R1 (1) 2082195443224542401->-6194206714706874713 2082195443224542401->-1099418133482020418 981526121424038557 FASTQ R2 (1) 981526121424038557->-6194206714706874713 263035524131296075 chip.pool_ta_ctl 529242458294769371 TAG-ALIGN 263035524131296075->529242458294769371 529242458294769371->-5547172444718949335 529242458294769371->-7230073886312263277 529242458294769371->5564275287787138318 529242458294769371->4544526326736769858 529242458294769371->3028398939558456283 529242458294769371->-1980302565217781555 529242458294769371->6484423711961806201 529242458294769371->-1592159809363231526 529242458294769371->3335385286176365132 529242458294769371->-6197832167616005984 -8292280351456759021 chip.bam2ta_ctl -717894733766168513 TAG-ALIGN -8292280351456759021->-717894733766168513 -717894733766168513->263035524131296075 6089294058628982820 Filt/deduped BAM 6089294058628982820->-8292280351456759021 6089294058628982820->5290843538056965587 -4308204940352652127 chip.bam2ta_ctl 187152382023276382 TAG-ALIGN -4308204940352652127->187152382023276382 187152382023276382->263035524131296075 -3407916056630235454 Filt/deduped BAM -3407916056630235454->-4308204940352652127 -3407916056630235454->5290843538056965587 4046356895408310537 chip.bam2ta_ctl 2494228547847999056 TAG-ALIGN 4046356895408310537->2494228547847999056 2494228547847999056->263035524131296075 2988041974543827033 Filt/deduped BAM 2988041974543827033->4046356895408310537 2988041974543827033->5290843538056965587 508324517701313711 chip.bam2ta_ctl -6732749509971408770 TAG-ALIGN 508324517701313711->-6732749509971408770 -6732749509971408770->263035524131296075 -6833336733957128810 Filt/deduped BAM -6833336733957128810->508324517701313711 -6833336733957128810->5290843538056965587 3210401482603984414 chip.bam2ta_ctl 8073937725725421985 TAG-ALIGN 3210401482603984414->8073937725725421985 8073937725725421985->263035524131296075 -9185909483037975853 Filt/deduped BAM -9185909483037975853->3210401482603984414 -9185909483037975853->5290843538056965587 -7261784631822243268 chip.bam2ta_ctl 4535248952124920048 TAG-ALIGN -7261784631822243268->4535248952124920048 4535248952124920048->263035524131296075 4676288640131466549 Filt/deduped BAM 4676288640131466549->-7261784631822243268 4676288640131466549->5290843538056965587 227169657210808923 chip.bam2ta_ctl -7747184475652126411 TAG-ALIGN 227169657210808923->-7747184475652126411 -7747184475652126411->263035524131296075 721745750215731616 Filt/deduped BAM 721745750215731616->227169657210808923 721745750215731616->5290843538056965587 -7748703087905165514 chip.bam2ta_ctl 3082197756073834832 TAG-ALIGN -7748703087905165514->3082197756073834832 3082197756073834832->263035524131296075 3319810889822703377 Filt/deduped BAM 3319810889822703377->-7748703087905165514 3319810889822703377->5290843538056965587 998023517171517850 chip.bam2ta_ctl -8580534997432930185 TAG-ALIGN 998023517171517850->-8580534997432930185 -8580534997432930185->263035524131296075 960155185924019661 Filt/deduped BAM 960155185924019661->998023517171517850 960155185924019661->5290843538056965587 5962922535338172863 chip.bam2ta_ctl -843812222592658117 TAG-ALIGN 5962922535338172863->-843812222592658117 -843812222592658117->263035524131296075 5793356426897903819 Filt/deduped BAM 5793356426897903819->5962922535338172863 5793356426897903819->5290843538056965587 3532218393826780265 chip.bam2ta_ctl -3257855407763260856 TAG-ALIGN 3532218393826780265->-3257855407763260856 -3257855407763260856->263035524131296075 192774073414587305 Filt/deduped BAM 192774073414587305->3532218393826780265 192774073414587305->5290843538056965587 -5787506775778979071 chip.bam2ta_ctl 5855892848159128166 TAG-ALIGN -5787506775778979071->5855892848159128166 5855892848159128166->263035524131296075 -5692840771312857532 Filt/deduped BAM -5692840771312857532->-5787506775778979071 -5692840771312857532->5290843538056965587 1897112472293056251 chip.bam2ta_ctl -710686202639746774 TAG-ALIGN 1897112472293056251->-710686202639746774 -710686202639746774->263035524131296075 583971229531920623 Filt/deduped BAM 583971229531920623->1897112472293056251 583971229531920623->5290843538056965587 -5358021928019513637 chip.bam2ta_ctl 6417286449409637644 TAG-ALIGN -5358021928019513637->6417286449409637644 6417286449409637644->263035524131296075 4822972096452308678 Filt/deduped BAM 4822972096452308678->-5358021928019513637 4822972096452308678->5290843538056965587 -1138924584677800051 chip.bam2ta_ctl -3076141231129863152 TAG-ALIGN -1138924584677800051->-3076141231129863152 -3076141231129863152->263035524131296075 6657851662486434345 Filt/deduped BAM 6657851662486434345->-1138924584677800051 6657851662486434345->5290843538056965587 7149065930848884552 chip.bam2ta_ctl -4462353737688624056 TAG-ALIGN 7149065930848884552->-4462353737688624056 -4462353737688624056->263035524131296075 6668122182308854267 Filt/deduped BAM 6668122182308854267->7149065930848884552 6668122182308854267->5290843538056965587 1300083564321068632 chip.bam2ta_ctl 7019492957222787577 TAG-ALIGN 1300083564321068632->7019492957222787577 7019492957222787577->263035524131296075 5520332248940822485 Filt/deduped BAM 5520332248940822485->1300083564321068632 5520332248940822485->5290843538056965587 -1600692259702846072 chip.bam2ta_ctl -5499539063601551806 TAG-ALIGN -1600692259702846072->-5499539063601551806 -5499539063601551806->263035524131296075 -2085947118824294465 Filt/deduped BAM -2085947118824294465->-1600692259702846072 -2085947118824294465->5290843538056965587 4669075931091929265 chip.bam2ta_ctl -6210506304430298571 TAG-ALIGN 4669075931091929265->-6210506304430298571 -6210506304430298571->263035524131296075 926084560206819514 Filt/deduped BAM 926084560206819514->4669075931091929265 926084560206819514->5290843538056965587 -4486569411541266040 chip.bam2ta_ctl 7085716334381593555 TAG-ALIGN -4486569411541266040->7085716334381593555 7085716334381593555->263035524131296075 -3230400030270433626 Filt/deduped BAM -3230400030270433626->-4486569411541266040 -3230400030270433626->5290843538056965587 5598741739929937367 chip.bam2ta_ctl -2396092895654221453 TAG-ALIGN 5598741739929937367->-2396092895654221453 -2396092895654221453->263035524131296075 -6445474090804204984 Filt/deduped BAM -6445474090804204984->5598741739929937367 -6445474090804204984->5290843538056965587 5548866353559368327 chip.bam2ta_ctl -6365243586163383455 TAG-ALIGN 5548866353559368327->-6365243586163383455 -6365243586163383455->263035524131296075 7671080552374373589 Filt/deduped BAM 7671080552374373589->5548866353559368327 7671080552374373589->5290843538056965587 6494220471531684004 chip.bam2ta_ctl 6455498011196752501 TAG-ALIGN 6494220471531684004->6455498011196752501 6455498011196752501->263035524131296075 8925639857225827675 Filt/deduped BAM 8925639857225827675->6494220471531684004 8925639857225827675->5290843538056965587 -2259538859647227903 chip.bam2ta_ctl -7671625658133264683 TAG-ALIGN -2259538859647227903->-7671625658133264683 -7671625658133264683->263035524131296075 4834205882885725741 Filt/deduped BAM 4834205882885725741->-2259538859647227903 4834205882885725741->5290843538056965587 934643119712669964 IDR Plot ppr 6484423711961806201->934643119712669964 -5393144938140975874 IDR Peak ppr 6484423711961806201->-5393144938140975874 -5393144938140975874->3335385286176365132 4560785703397303934 IDR Plot rep1_vs_rep2 7521093471738910437->4560785703397303934 -7293990918020115081 IDR NPeak rep1_vs_rep2 7521093471738910437->-7293990918020115081 -7293990918020115081->3335385286176365132 45435753197506319 Overlap Peak rep1_vs_rep2 2330327758786984588->45435753197506319 45435753197506319->-1592159809363231526 -8408725228124016211 Overlap Peak optimal -1592159809363231526->-8408725228124016211 -1891646936521977928 Overlap reproducibility -1592159809363231526->-1891646936521977928 -232449006852680676 IDR Peak optimal 3335385286176365132->-232449006852680676 8972225590474584470 IDR reproducibility 3335385286176365132->8972225590474584470 1317507726956252019 Overlap Peak ppr -6197832167616005984->1317507726956252019 1317507726956252019->-1592159809363231526 -1392401509267012486 JSD Plot 5290843538056965587->-1392401509267012486

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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