File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF590EUS.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF590EUS.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF590EUS.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF590EUS.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF590EUS.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF469HPU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF469HPU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469HPU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469HPU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF469HPU.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.436M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.436M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.436M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.436M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup.pr1_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup.pr2_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF590EUS.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF590EUS.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF590EUS.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF590EUS.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF590EUS.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF590EUS.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF469HPU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF469HPU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF469HPU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF469HPU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469HPU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469HPU.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF590EUS.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/7a5184b7-41df-468a-9868-6793bb79964f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.436M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.436M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF590EUS.crop_101-2bp.nodup_x_ctl.pooled.295M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF469HPU.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3617313065786684007 chip.macs2_signal_track_pooled 2757289768111774926 BW FC 3617313065786684007->2757289768111774926 7641777788140897029 BW p-val 3617313065786684007->7641777788140897029 4386330272223474409 chip.call_peak_pooled 8968940058422450367 Peak (bfilt) 4386330272223474409->8968940058422450367 3987051958506369700 Peak 4386330272223474409->3987051958506369700 -4036762202450793574 chip.idr_ppr 3987051958506369700->-4036762202450793574 4602885708976526952 chip.idr 3987051958506369700->4602885708976526952 8100238008891315977 chip.overlap 3987051958506369700->8100238008891315977 -8767082653098680321 chip.overlap_ppr 3987051958506369700->-8767082653098680321 8453550068701706659 chip.pool_ta 3226839488993479675 TAG-ALIGN 8453550068701706659->3226839488993479675 3226839488993479675->3617313065786684007 3226839488993479675->4386330272223474409 3226839488993479675->-4036762202450793574 3226839488993479675->4602885708976526952 3226839488993479675->8100238008891315977 3226839488993479675->-8767082653098680321 -3748857055543760569 chip.call_peak -3868971712204495088 Peak (bfilt) -3748857055543760569->-3868971712204495088 -8475760496709044203 Peak -3748857055543760569->-8475760496709044203 -8475760496709044203->4602885708976526952 -8475760496709044203->8100238008891315977 -141953079568793892 chip.reproducibility_overlap -8475760496709044203->-141953079568793892 4432416269758806360 chip.reproducibility_idr -8475760496709044203->4432416269758806360 7409993650320011224 chip.bam2ta 1342011455205703603 TAG-ALIGN 7409993650320011224->1342011455205703603 1342011455205703603->8453550068701706659 1342011455205703603->-3748857055543760569 -3934314381761627791 chip.macs2_signal_track 1342011455205703603->-3934314381761627791 1342011455205703603->-4036762202450793574 1342011455205703603->-141953079568793892 1342011455205703603->4432416269758806360 1342011455205703603->-8767082653098680321 -3075834840211233967 chip.filter -5448370832391398835 SAMstats QC -3075834840211233967->-5448370832391398835 6202042980386717860 Filt/deduped BAM -3075834840211233967->6202042980386717860 8979904220343954063 LibCmplx QC -3075834840211233967->8979904220343954063 6202042980386717860->7409993650320011224 -117139178255512438 chip.jsd 6202042980386717860->-117139178255512438 -9066795747726737922 chip.align -8813160870543891385 SAMstats QC -9066795747726737922->-8813160870543891385 1518158597318398504 BAM -9066795747726737922->1518158597318398504 1518158597318398504->-3075834840211233967 -8756894453449023357 chip.xcor -8518415456738431480 XCOR Plot -8756894453449023357->-8518415456738431480 -3438164441390200668 BW FC -3934314381761627791->-3438164441390200668 -8035240840809639417 BW p-val -3934314381761627791->-8035240840809639417 6456258119500395991 FASTQ R1 (1) 6456258119500395991->-9066795747726737922 6456258119500395991->-8756894453449023357 -4439852404799772533 FASTQ R2 (1) -4439852404799772533->-9066795747726737922 114296103172630721 chip.call_peak 2452477763568695108 Peak (bfilt) 114296103172630721->2452477763568695108 7190960297103646306 Peak 114296103172630721->7190960297103646306 7190960297103646306->4602885708976526952 7190960297103646306->8100238008891315977 7190960297103646306->-141953079568793892 7190960297103646306->4432416269758806360 -825427061169816219 chip.bam2ta 2720026173781228628 TAG-ALIGN -825427061169816219->2720026173781228628 2720026173781228628->8453550068701706659 2720026173781228628->114296103172630721 7002672233083479341 chip.macs2_signal_track 2720026173781228628->7002672233083479341 2720026173781228628->-4036762202450793574 2720026173781228628->-141953079568793892 2720026173781228628->4432416269758806360 2720026173781228628->-8767082653098680321 -146709492462958587 chip.filter -5412538469365774094 SAMstats QC -146709492462958587->-5412538469365774094 8728379312066862115 Filt/deduped BAM -146709492462958587->8728379312066862115 -4778721538655846477 LibCmplx QC -146709492462958587->-4778721538655846477 8728379312066862115->-825427061169816219 8728379312066862115->-117139178255512438 3085021074074892783 chip.align -220382377276580063 SAMstats QC 3085021074074892783->-220382377276580063 -3588827447539708295 BAM 3085021074074892783->-3588827447539708295 -3588827447539708295->-146709492462958587 4359209285094293276 chip.xcor -6019974355537685546 XCOR Plot 4359209285094293276->-6019974355537685546 6549829662234733340 BW FC 7002672233083479341->6549829662234733340 -6647195740701086396 BW p-val 7002672233083479341->-6647195740701086396 -7683053998803647141 FASTQ R1 (1) -7683053998803647141->3085021074074892783 -7683053998803647141->4359209285094293276 6826114636490726375 FASTQ R2 (1) 6826114636490726375->3085021074074892783 -5077536172455874113 chip.pool_ta_ctl 8187095217035067425 TAG-ALIGN -5077536172455874113->8187095217035067425 8187095217035067425->3617313065786684007 8187095217035067425->4386330272223474409 8187095217035067425->-3748857055543760569 8187095217035067425->-3934314381761627791 8187095217035067425->114296103172630721 8187095217035067425->7002672233083479341 8187095217035067425->-4036762202450793574 8187095217035067425->-141953079568793892 8187095217035067425->4432416269758806360 8187095217035067425->-8767082653098680321 2083754069577456757 chip.bam2ta_ctl 8846872474754046274 TAG-ALIGN 2083754069577456757->8846872474754046274 8846872474754046274->-5077536172455874113 968442812843702752 Filt/deduped BAM 968442812843702752->2083754069577456757 968442812843702752->-117139178255512438 1890935609592944067 chip.bam2ta_ctl 8731389675918438145 TAG-ALIGN 1890935609592944067->8731389675918438145 8731389675918438145->-5077536172455874113 -2267105121569528288 Filt/deduped BAM -2267105121569528288->1890935609592944067 -2267105121569528288->-117139178255512438 5625616724735423833 chip.bam2ta_ctl -6887204219390839876 TAG-ALIGN 5625616724735423833->-6887204219390839876 -6887204219390839876->-5077536172455874113 1399009412652129676 Filt/deduped BAM 1399009412652129676->5625616724735423833 1399009412652129676->-117139178255512438 -5940474151063843104 chip.bam2ta_ctl 4053714552782249950 TAG-ALIGN -5940474151063843104->4053714552782249950 4053714552782249950->-5077536172455874113 4352478728414128076 Filt/deduped BAM 4352478728414128076->-5940474151063843104 4352478728414128076->-117139178255512438 3512521164547412827 chip.bam2ta_ctl -4705084086606759263 TAG-ALIGN 3512521164547412827->-4705084086606759263 -4705084086606759263->-5077536172455874113 7622540448057209827 Filt/deduped BAM 7622540448057209827->3512521164547412827 7622540448057209827->-117139178255512438 3755628727446808818 chip.bam2ta_ctl -8673541763173183449 TAG-ALIGN 3755628727446808818->-8673541763173183449 -8673541763173183449->-5077536172455874113 -6842636083802221945 Filt/deduped BAM -6842636083802221945->3755628727446808818 -6842636083802221945->-117139178255512438 8509381756276773680 chip.bam2ta_ctl -4434982970015355958 TAG-ALIGN 8509381756276773680->-4434982970015355958 -4434982970015355958->-5077536172455874113 8014257543520520439 Filt/deduped BAM 8014257543520520439->8509381756276773680 8014257543520520439->-117139178255512438 6231011325886608523 chip.bam2ta_ctl 7924568876305196014 TAG-ALIGN 6231011325886608523->7924568876305196014 7924568876305196014->-5077536172455874113 5632343818355287215 Filt/deduped BAM 5632343818355287215->6231011325886608523 5632343818355287215->-117139178255512438 5961259489159142054 chip.bam2ta_ctl 972181800611144850 TAG-ALIGN 5961259489159142054->972181800611144850 972181800611144850->-5077536172455874113 -5046712012215743605 Filt/deduped BAM -5046712012215743605->5961259489159142054 -5046712012215743605->-117139178255512438 -4196726087819782844 chip.bam2ta_ctl 8852646971599870245 TAG-ALIGN -4196726087819782844->8852646971599870245 8852646971599870245->-5077536172455874113 -2169633644342849185 Filt/deduped BAM -2169633644342849185->-4196726087819782844 -2169633644342849185->-117139178255512438 606959424988720244 chip.bam2ta_ctl 5280131675959788857 TAG-ALIGN 606959424988720244->5280131675959788857 5280131675959788857->-5077536172455874113 6209231699364768658 Filt/deduped BAM 6209231699364768658->606959424988720244 6209231699364768658->-117139178255512438 7214373689487857940 chip.bam2ta_ctl 6608832460599939538 TAG-ALIGN 7214373689487857940->6608832460599939538 6608832460599939538->-5077536172455874113 -6101073346936789940 Filt/deduped BAM -6101073346936789940->7214373689487857940 -6101073346936789940->-117139178255512438 3155126195368283278 chip.bam2ta_ctl -3158559183594136846 TAG-ALIGN 3155126195368283278->-3158559183594136846 -3158559183594136846->-5077536172455874113 -5117148096174564353 Filt/deduped BAM -5117148096174564353->3155126195368283278 -5117148096174564353->-117139178255512438 -8246861161574466425 chip.bam2ta_ctl -2450013447210951215 TAG-ALIGN -8246861161574466425->-2450013447210951215 -2450013447210951215->-5077536172455874113 -1782188800963796352 Filt/deduped BAM -1782188800963796352->-8246861161574466425 -1782188800963796352->-117139178255512438 -6204503697975987349 chip.bam2ta_ctl 111514884991747122 TAG-ALIGN -6204503697975987349->111514884991747122 111514884991747122->-5077536172455874113 4112848703494664152 Filt/deduped BAM 4112848703494664152->-6204503697975987349 4112848703494664152->-117139178255512438 3926887413497779797 chip.bam2ta_ctl 5513864823994324846 TAG-ALIGN 3926887413497779797->5513864823994324846 5513864823994324846->-5077536172455874113 5289082543365362785 Filt/deduped BAM 5289082543365362785->3926887413497779797 5289082543365362785->-117139178255512438 -3925909802364637338 chip.bam2ta_ctl -2355590263807481018 TAG-ALIGN -3925909802364637338->-2355590263807481018 -2355590263807481018->-5077536172455874113 6716990307521919695 Filt/deduped BAM 6716990307521919695->-3925909802364637338 6716990307521919695->-117139178255512438 6324862142642014769 chip.bam2ta_ctl 3660946433229483271 TAG-ALIGN 6324862142642014769->3660946433229483271 3660946433229483271->-5077536172455874113 4776692282921840792 Filt/deduped BAM 4776692282921840792->6324862142642014769 4776692282921840792->-117139178255512438 2738992975886734661 chip.bam2ta_ctl 337883847323755459 TAG-ALIGN 2738992975886734661->337883847323755459 337883847323755459->-5077536172455874113 -9087287824638686755 Filt/deduped BAM -9087287824638686755->2738992975886734661 -9087287824638686755->-117139178255512438 -6564892180174769509 chip.bam2ta_ctl -6177162925244961398 TAG-ALIGN -6564892180174769509->-6177162925244961398 -6177162925244961398->-5077536172455874113 -955059461551146641 Filt/deduped BAM -955059461551146641->-6564892180174769509 -955059461551146641->-117139178255512438 6094723152619086400 chip.bam2ta_ctl -7990039350478389931 TAG-ALIGN 6094723152619086400->-7990039350478389931 -7990039350478389931->-5077536172455874113 3076500464878782024 Filt/deduped BAM 3076500464878782024->6094723152619086400 3076500464878782024->-117139178255512438 -5112399753032115633 chip.bam2ta_ctl -5316841766754194603 TAG-ALIGN -5112399753032115633->-5316841766754194603 -5316841766754194603->-5077536172455874113 -8969495413941453092 Filt/deduped BAM -8969495413941453092->-5112399753032115633 -8969495413941453092->-117139178255512438 -7640733102366305736 chip.bam2ta_ctl 5930785065280647284 TAG-ALIGN -7640733102366305736->5930785065280647284 5930785065280647284->-5077536172455874113 -2666442319398657051 Filt/deduped BAM -2666442319398657051->-7640733102366305736 -2666442319398657051->-117139178255512438 -6768043115769725453 chip.bam2ta_ctl -7961176418837975787 TAG-ALIGN -6768043115769725453->-7961176418837975787 -7961176418837975787->-5077536172455874113 1250760348328464006 Filt/deduped BAM 1250760348328464006->-6768043115769725453 1250760348328464006->-117139178255512438 7552440780194367233 IDR Plot ppr -4036762202450793574->7552440780194367233 2958570294581307151 IDR Peak ppr -4036762202450793574->2958570294581307151 2958570294581307151->4432416269758806360 -6026568985070826884 IDR Plot rep1_vs_rep2 4602885708976526952->-6026568985070826884 4714539885020122560 IDR NPeak rep1_vs_rep2 4602885708976526952->4714539885020122560 4714539885020122560->4432416269758806360 3939456153911628123 Overlap Peak rep1_vs_rep2 8100238008891315977->3939456153911628123 3939456153911628123->-141953079568793892 -7960481913958486439 Overlap Peak optimal -141953079568793892->-7960481913958486439 -2268573918385005575 Overlap reproducibility -141953079568793892->-2268573918385005575 3628652256331082073 IDR Peak optimal 4432416269758806360->3628652256331082073 5198660891254366554 IDR reproducibility 4432416269758806360->5198660891254366554 2599742448263864059 Overlap Peak ppr -8767082653098680321->2599742448263864059 2599742448263864059->-141953079568793892 -4321567064628954009 JSD Plot -117139178255512438->-4321567064628954009

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/91e44264-e545-4004-a109-12c5cd79d41c/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.436M.pval.signal.bigwig?Expires=1601332922&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=N2YKaBuR%2BC%2FzrkObg8tDCtCyeX0uObY6URzU2w2eSb4sdB%2FLoezU0DG%2BZo5j6x9qCnFWqAJryoE43qaO3YJGJny%2FOsxx%2BYwHK6i3B%2BPTn6W3b74W38e88NIWnJlA0dCll7%2B6IYTLT%2FCO46nSx%2FQJbSI0zYzSbz7HPoMGwPHjfepNOcZf8b0kaYGNWjzGdApNV9zg9CmY5n1iouPpsKl7uw%2FYafpZCxgDjn10O4IMr8BURWyXsCCDnkZEoBcR0Kz2jTNdPWPa%2BVebg0hK18FLe1TFJwnL%2B3AOdL4SL%2FG0eh%2BHxeGbtQ%2FW8jG96Ncp6kES%2BFNmerL5024BGj7LZrifeA%3D%3D"
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