File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF873ZNT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF873ZNT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF873ZNT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF873ZNT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF873ZNT.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF853TFW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF853TFW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF853TFW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF853TFW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF853TFW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.902M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.902M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.902M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.902M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF873ZNT.crop_101-2bp.nodup.pr1_x_ctl.pooled.541M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF873ZNT.crop_101-2bp.nodup.pr1_x_ctl.pooled.541M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF873ZNT.crop_101-2bp.nodup.pr1_x_ctl.pooled.541M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF873ZNT.crop_101-2bp.nodup.pr1_x_ctl.pooled.541M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF873ZNT.crop_101-2bp.nodup.pr2_x_ctl.pooled.541M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF873ZNT.crop_101-2bp.nodup.pr2_x_ctl.pooled.541M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF873ZNT.crop_101-2bp.nodup.pr2_x_ctl.pooled.541M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF873ZNT.crop_101-2bp.nodup.pr2_x_ctl.pooled.541M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF853TFW.crop_101-2bp.nodup.pr1_x_ctl.pooled.360M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF853TFW.crop_101-2bp.nodup.pr1_x_ctl.pooled.360M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF853TFW.crop_101-2bp.nodup.pr1_x_ctl.pooled.360M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF853TFW.crop_101-2bp.nodup.pr1_x_ctl.pooled.360M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF853TFW.crop_101-2bp.nodup.pr2_x_ctl.pooled.360M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF853TFW.crop_101-2bp.nodup.pr2_x_ctl.pooled.360M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF853TFW.crop_101-2bp.nodup.pr2_x_ctl.pooled.360M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF853TFW.crop_101-2bp.nodup.pr2_x_ctl.pooled.360M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.902M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.902M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.902M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF873ZNT.crop_101-2bp.nodup.pr1_x_ctl.pooled.541M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF873ZNT.crop_101-2bp.nodup.pr2_x_ctl.pooled.541M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF873ZNT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF873ZNT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF873ZNT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF873ZNT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF873ZNT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF873ZNT.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853TFW.crop_101-2bp.nodup.pr1_x_ctl.pooled.360M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853TFW.crop_101-2bp.nodup.pr2_x_ctl.pooled.360M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF853TFW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF853TFW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF853TFW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF853TFW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF853TFW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF853TFW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF873ZNT.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.902M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.902M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF873ZNT.crop_101-2bp.nodup_x_ctl.pooled.541M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6a8c1c96-0477-495c-9ab6-926ffc616112/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF853TFW.crop_101-2bp.nodup_x_ctl.pooled.360M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 1439489269553538882 chip.macs2_signal_track_pooled -1212247016381861663 BW FC 1439489269553538882->-1212247016381861663 -7407345139360413163 BW p-val 1439489269553538882->-7407345139360413163 6515381276914591892 chip.call_peak_pooled 3232109822537372374 Peak (bfilt) 6515381276914591892->3232109822537372374 1978109397522621781 Peak 6515381276914591892->1978109397522621781 -7130149727442441780 chip.idr_ppr 1978109397522621781->-7130149727442441780 -3025749177535330266 chip.idr 1978109397522621781->-3025749177535330266 -1223866928024567755 chip.overlap 1978109397522621781->-1223866928024567755 5598205249789338854 chip.overlap_ppr 1978109397522621781->5598205249789338854 5425392367539076629 chip.pool_ta 943815230804163295 TAG-ALIGN 5425392367539076629->943815230804163295 943815230804163295->1439489269553538882 943815230804163295->6515381276914591892 943815230804163295->-7130149727442441780 943815230804163295->-3025749177535330266 943815230804163295->-1223866928024567755 943815230804163295->5598205249789338854 -4917137478272955068 chip.call_peak 1613652762243232285 Peak (bfilt) -4917137478272955068->1613652762243232285 6244415688007959277 Peak -4917137478272955068->6244415688007959277 6244415688007959277->-3025749177535330266 6244415688007959277->-1223866928024567755 1632332987322486271 chip.reproducibility_overlap 6244415688007959277->1632332987322486271 2810404082736109028 chip.reproducibility_idr 6244415688007959277->2810404082736109028 -2551846992693448967 chip.bam2ta -422527499641845243 TAG-ALIGN -2551846992693448967->-422527499641845243 -422527499641845243->5425392367539076629 -422527499641845243->-4917137478272955068 8975408872931704320 chip.macs2_signal_track -422527499641845243->8975408872931704320 -422527499641845243->-7130149727442441780 -422527499641845243->1632332987322486271 -422527499641845243->2810404082736109028 -422527499641845243->5598205249789338854 -3168894220011348801 chip.filter 3215788152081625092 SAMstats QC -3168894220011348801->3215788152081625092 6876100438444831271 Filt/deduped BAM -3168894220011348801->6876100438444831271 -7112616109239949705 LibCmplx QC -3168894220011348801->-7112616109239949705 6876100438444831271->-2551846992693448967 2696138654691716639 chip.jsd 6876100438444831271->2696138654691716639 1716862278295882806 chip.jsd 6876100438444831271->1716862278295882806 7932764538624715720 chip.align -2455885589031305043 SAMstats QC 7932764538624715720->-2455885589031305043 6244240563939422660 BAM 7932764538624715720->6244240563939422660 6244240563939422660->-3168894220011348801 7839506491951168047 chip.xcor 5410128947103491579 XCOR Plot 7839506491951168047->5410128947103491579 3107509921060481125 BW FC 8975408872931704320->3107509921060481125 8248379769429903310 BW p-val 8975408872931704320->8248379769429903310 -7974388313395765310 FASTQ R1 (1) -7974388313395765310->7932764538624715720 -7974388313395765310->7839506491951168047 8913580333251760514 FASTQ R2 (1) 8913580333251760514->7932764538624715720 -6484980825677706380 chip.call_peak -580893407706673545 Peak (bfilt) -6484980825677706380->-580893407706673545 -6249350139719920076 Peak -6484980825677706380->-6249350139719920076 -6249350139719920076->-3025749177535330266 -6249350139719920076->-1223866928024567755 -6249350139719920076->1632332987322486271 -6249350139719920076->2810404082736109028 2766527510992246258 chip.bam2ta 2224361790329568088 TAG-ALIGN 2766527510992246258->2224361790329568088 2224361790329568088->5425392367539076629 2224361790329568088->-6484980825677706380 1420244345101602138 chip.macs2_signal_track 2224361790329568088->1420244345101602138 2224361790329568088->-7130149727442441780 2224361790329568088->1632332987322486271 2224361790329568088->2810404082736109028 2224361790329568088->5598205249789338854 -1146193857580165 chip.filter 8505824649142046235 SAMstats QC -1146193857580165->8505824649142046235 4027949491317289292 Filt/deduped BAM -1146193857580165->4027949491317289292 3861958700207457476 LibCmplx QC -1146193857580165->3861958700207457476 4027949491317289292->2766527510992246258 4027949491317289292->2696138654691716639 4027949491317289292->1716862278295882806 -2282833343979991700 chip.align -3419032890961315184 SAMstats QC -2282833343979991700->-3419032890961315184 -805853225786075548 BAM -2282833343979991700->-805853225786075548 -805853225786075548->-1146193857580165 -3300387437868534983 chip.xcor 8071875792027183942 XCOR Plot -3300387437868534983->8071875792027183942 1081685302707152531 BW FC 1420244345101602138->1081685302707152531 -7018434983095328338 BW p-val 1420244345101602138->-7018434983095328338 1627771662393515441 FASTQ R1 (1) 1627771662393515441->-2282833343979991700 1627771662393515441->-3300387437868534983 6724144354739253412 FASTQ R2 (1) 6724144354739253412->-2282833343979991700 8720655358327782383 chip.pool_ta_ctl -6286441861553746211 TAG-ALIGN 8720655358327782383->-6286441861553746211 -6286441861553746211->1439489269553538882 -6286441861553746211->6515381276914591892 -6286441861553746211->-4917137478272955068 -6286441861553746211->8975408872931704320 -6286441861553746211->-6484980825677706380 -6286441861553746211->1420244345101602138 -6286441861553746211->-7130149727442441780 -6286441861553746211->1632332987322486271 -6286441861553746211->2810404082736109028 -6286441861553746211->5598205249789338854 -8978534290251815816 chip.bam2ta_ctl -5561196561428280581 TAG-ALIGN -8978534290251815816->-5561196561428280581 -5561196561428280581->8720655358327782383 1702254086322485626 Filt/deduped BAM 1702254086322485626->-8978534290251815816 1702254086322485626->2696138654691716639 1702254086322485626->1716862278295882806 -6684886302394633719 chip.bam2ta_ctl -2965200670404987946 TAG-ALIGN -6684886302394633719->-2965200670404987946 -2965200670404987946->8720655358327782383 -6053167327932018089 Filt/deduped BAM -6053167327932018089->-6684886302394633719 -6053167327932018089->2696138654691716639 -6053167327932018089->1716862278295882806 -5834649740853058736 chip.bam2ta_ctl 6505914985826986336 TAG-ALIGN -5834649740853058736->6505914985826986336 6505914985826986336->8720655358327782383 9179563558574862589 Filt/deduped BAM 9179563558574862589->-5834649740853058736 9179563558574862589->2696138654691716639 9179563558574862589->1716862278295882806 4499965144758278311 chip.bam2ta_ctl 5149283758032452422 TAG-ALIGN 4499965144758278311->5149283758032452422 5149283758032452422->8720655358327782383 -6475667705452681133 Filt/deduped BAM -6475667705452681133->4499965144758278311 -6475667705452681133->2696138654691716639 -6475667705452681133->1716862278295882806 5686491737062373662 chip.bam2ta_ctl -8939387830386956808 TAG-ALIGN 5686491737062373662->-8939387830386956808 -8939387830386956808->8720655358327782383 3220505642019739153 Filt/deduped BAM 3220505642019739153->5686491737062373662 3220505642019739153->2696138654691716639 3220505642019739153->1716862278295882806 -875498537414576867 chip.bam2ta_ctl 1852366842822812654 TAG-ALIGN -875498537414576867->1852366842822812654 1852366842822812654->8720655358327782383 4042754863845696703 Filt/deduped BAM 4042754863845696703->-875498537414576867 4042754863845696703->2696138654691716639 4042754863845696703->1716862278295882806 -4641918582215341251 chip.bam2ta_ctl 1365628678593458990 TAG-ALIGN -4641918582215341251->1365628678593458990 1365628678593458990->8720655358327782383 -3295087205076255130 Filt/deduped BAM -3295087205076255130->-4641918582215341251 -3295087205076255130->2696138654691716639 -3295087205076255130->1716862278295882806 -8420388422929397568 chip.bam2ta_ctl 1830898141565202379 TAG-ALIGN -8420388422929397568->1830898141565202379 1830898141565202379->8720655358327782383 1445504780010611819 Filt/deduped BAM 1445504780010611819->-8420388422929397568 1445504780010611819->2696138654691716639 1445504780010611819->1716862278295882806 39987547864886268 chip.bam2ta_ctl 8623217558415765638 TAG-ALIGN 39987547864886268->8623217558415765638 8623217558415765638->8720655358327782383 5690066653705477641 Filt/deduped BAM 5690066653705477641->39987547864886268 5690066653705477641->2696138654691716639 5690066653705477641->1716862278295882806 8834521143504067682 chip.bam2ta_ctl 5239465537094031246 TAG-ALIGN 8834521143504067682->5239465537094031246 5239465537094031246->8720655358327782383 8567001620238260940 Filt/deduped BAM 8567001620238260940->8834521143504067682 8567001620238260940->2696138654691716639 8567001620238260940->1716862278295882806 -4090357293137163707 chip.bam2ta_ctl 1604704258821391353 TAG-ALIGN -4090357293137163707->1604704258821391353 1604704258821391353->8720655358327782383 -7108602128391671245 Filt/deduped BAM -7108602128391671245->-4090357293137163707 -7108602128391671245->2696138654691716639 -7108602128391671245->1716862278295882806 5701412944318453206 chip.bam2ta_ctl 3226615927917505037 TAG-ALIGN 5701412944318453206->3226615927917505037 3226615927917505037->8720655358327782383 8189866754968071559 Filt/deduped BAM 8189866754968071559->5701412944318453206 8189866754968071559->2696138654691716639 8189866754968071559->1716862278295882806 -1787956183601998657 chip.bam2ta_ctl -7389013246558881278 TAG-ALIGN -1787956183601998657->-7389013246558881278 -7389013246558881278->8720655358327782383 -7682349919524334126 Filt/deduped BAM -7682349919524334126->-1787956183601998657 -7682349919524334126->2696138654691716639 -7682349919524334126->1716862278295882806 4914748937108820161 chip.bam2ta_ctl 1722637135242266177 TAG-ALIGN 4914748937108820161->1722637135242266177 1722637135242266177->8720655358327782383 -9081185506385523554 Filt/deduped BAM -9081185506385523554->4914748937108820161 -9081185506385523554->2696138654691716639 -9081185506385523554->1716862278295882806 -2739860393959331429 chip.bam2ta_ctl -7235467741517851590 TAG-ALIGN -2739860393959331429->-7235467741517851590 -7235467741517851590->8720655358327782383 -2944056053125803368 Filt/deduped BAM -2944056053125803368->-2739860393959331429 -2944056053125803368->2696138654691716639 -2944056053125803368->1716862278295882806 1464289250120664879 chip.bam2ta_ctl 3325616412106875891 TAG-ALIGN 1464289250120664879->3325616412106875891 3325616412106875891->8720655358327782383 3668674291965754016 Filt/deduped BAM 3668674291965754016->1464289250120664879 3668674291965754016->2696138654691716639 3668674291965754016->1716862278295882806 7011986599488069637 chip.bam2ta_ctl 8161519661150411766 TAG-ALIGN 7011986599488069637->8161519661150411766 8161519661150411766->8720655358327782383 6706005767379407316 Filt/deduped BAM 6706005767379407316->7011986599488069637 6706005767379407316->2696138654691716639 6706005767379407316->1716862278295882806 4295078648045190915 chip.bam2ta_ctl -3201142929709154097 TAG-ALIGN 4295078648045190915->-3201142929709154097 -3201142929709154097->8720655358327782383 348656850853879634 Filt/deduped BAM 348656850853879634->4295078648045190915 348656850853879634->2696138654691716639 348656850853879634->1716862278295882806 2027729331127855870 chip.bam2ta_ctl -5360272494444406875 TAG-ALIGN 2027729331127855870->-5360272494444406875 -5360272494444406875->8720655358327782383 -921908999904585764 Filt/deduped BAM -921908999904585764->2027729331127855870 -921908999904585764->2696138654691716639 -921908999904585764->1716862278295882806 8682741233223859380 chip.bam2ta_ctl -442809731143032162 TAG-ALIGN 8682741233223859380->-442809731143032162 -442809731143032162->8720655358327782383 7320962967132832572 Filt/deduped BAM 7320962967132832572->8682741233223859380 7320962967132832572->2696138654691716639 7320962967132832572->1716862278295882806 4457751057579504474 chip.bam2ta_ctl -1354620257955559370 TAG-ALIGN 4457751057579504474->-1354620257955559370 -1354620257955559370->8720655358327782383 4154369048534227519 Filt/deduped BAM 4154369048534227519->4457751057579504474 4154369048534227519->2696138654691716639 4154369048534227519->1716862278295882806 3285433425429088984 chip.bam2ta_ctl -3561911589765981969 TAG-ALIGN 3285433425429088984->-3561911589765981969 -3561911589765981969->8720655358327782383 5183828058998306941 Filt/deduped BAM 5183828058998306941->3285433425429088984 5183828058998306941->2696138654691716639 5183828058998306941->1716862278295882806 875745809434088381 chip.bam2ta_ctl 5907068081463845213 TAG-ALIGN 875745809434088381->5907068081463845213 5907068081463845213->8720655358327782383 3290864430198176347 Filt/deduped BAM 3290864430198176347->875745809434088381 3290864430198176347->2696138654691716639 3290864430198176347->1716862278295882806 7076221660316318408 chip.bam2ta_ctl 9205392032388567411 TAG-ALIGN 7076221660316318408->9205392032388567411 9205392032388567411->8720655358327782383 8596609645033315019 Filt/deduped BAM 8596609645033315019->7076221660316318408 8596609645033315019->2696138654691716639 8596609645033315019->1716862278295882806 -717688395846720281 IDR Plot ppr -7130149727442441780->-717688395846720281 -8933017337597617964 IDR Peak ppr -7130149727442441780->-8933017337597617964 -8933017337597617964->2810404082736109028 -6020396252129176758 IDR Plot rep1_vs_rep2 -3025749177535330266->-6020396252129176758 -4107262697547396728 IDR NPeak rep1_vs_rep2 -3025749177535330266->-4107262697547396728 -4107262697547396728->2810404082736109028 -154831922653066297 Overlap Peak rep1_vs_rep2 -1223866928024567755->-154831922653066297 -154831922653066297->1632332987322486271 -2508140250621992368 Overlap Peak optimal 1632332987322486271->-2508140250621992368 811895294170091643 Overlap reproducibility 1632332987322486271->811895294170091643 8919148931734665667 IDR Peak optimal 2810404082736109028->8919148931734665667 -4026725379208206777 IDR reproducibility 2810404082736109028->-4026725379208206777 -7749531504170155048 Overlap Peak ppr 5598205249789338854->-7749531504170155048 -7749531504170155048->1632332987322486271 6746645316986664552 JSD Plot 2696138654691716639->6746645316986664552 1716862278295882806->6746645316986664552

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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