File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c3548036-7f18-4bdd-9223-fea062e056df/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF243REJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF243REJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF243REJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF243REJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF243REJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF632RYD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF632RYD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RYD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RYD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF632RYD.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF243REJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF243REJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF243REJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF243REJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF243REJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF243REJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF243REJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF243REJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF632RYD.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RYD.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RYD.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RYD.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF632RYD.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RYD.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RYD.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RYD.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF243REJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF243REJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF243REJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF243REJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF243REJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF243REJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF243REJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF243REJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RYD.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RYD.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF632RYD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF632RYD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF632RYD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF632RYD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RYD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RYD.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF243REJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF243REJ.crop_101-2bp.nodup_x_ctl.pooled.259M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/5573fa7a-a9f3-4367-b5b6-089bf46aafe3/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF632RYD.crop_101-2bp.nodup_x_ctl.pooled.269M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 -6861277771503759719 chip.macs2_signal_track_pooled 2721110992008411492 BW FC -6861277771503759719->2721110992008411492 -596521928096200736 BW p-val -6861277771503759719->-596521928096200736 4499353223319900743 chip.call_peak_pooled 5164313923597337989 Peak (bfilt) 4499353223319900743->5164313923597337989 -7551059609246392234 Peak 4499353223319900743->-7551059609246392234 -6710021377563234819 chip.idr_ppr -7551059609246392234->-6710021377563234819 -6997699511394552925 chip.idr -7551059609246392234->-6997699511394552925 -3592973150452667571 chip.overlap -7551059609246392234->-3592973150452667571 6020864174337529281 chip.overlap_ppr -7551059609246392234->6020864174337529281 1898430436021170679 chip.pool_ta 789819517366540047 TAG-ALIGN 1898430436021170679->789819517366540047 789819517366540047->-6861277771503759719 789819517366540047->4499353223319900743 789819517366540047->-6710021377563234819 789819517366540047->-6997699511394552925 789819517366540047->-3592973150452667571 789819517366540047->6020864174337529281 -5329904474908914607 chip.call_peak -60832054155867830 Peak (bfilt) -5329904474908914607->-60832054155867830 8652802993962220396 Peak -5329904474908914607->8652802993962220396 8652802993962220396->-6997699511394552925 8652802993962220396->-3592973150452667571 -5442430179241676664 chip.reproducibility_overlap 8652802993962220396->-5442430179241676664 -6697005970645198275 chip.reproducibility_idr 8652802993962220396->-6697005970645198275 5534061450327098073 chip.bam2ta 5883926815652103521 TAG-ALIGN 5534061450327098073->5883926815652103521 5883926815652103521->1898430436021170679 5883926815652103521->-5329904474908914607 7715120507511566338 chip.macs2_signal_track 5883926815652103521->7715120507511566338 5883926815652103521->-6710021377563234819 5883926815652103521->-5442430179241676664 5883926815652103521->-6697005970645198275 5883926815652103521->6020864174337529281 -1740362840403829896 chip.filter 3604136108875246214 SAMstats QC -1740362840403829896->3604136108875246214 -5281544423192867378 Filt/deduped BAM -1740362840403829896->-5281544423192867378 7097214175102079081 LibCmplx QC -1740362840403829896->7097214175102079081 -5281544423192867378->5534061450327098073 2825986395806962473 chip.jsd -5281544423192867378->2825986395806962473 -6201005626292254399 chip.align 1034209612210658160 SAMstats QC -6201005626292254399->1034209612210658160 4478596147950182136 BAM -6201005626292254399->4478596147950182136 4478596147950182136->-1740362840403829896 8944032093414256348 chip.xcor -2440846983123385394 XCOR Plot 8944032093414256348->-2440846983123385394 2688169972919007321 BW FC 7715120507511566338->2688169972919007321 -2825141417383494905 BW p-val 7715120507511566338->-2825141417383494905 935513411730069298 FASTQ R1 (1) 935513411730069298->-6201005626292254399 935513411730069298->8944032093414256348 9001835584741007807 FASTQ R2 (1) 9001835584741007807->-6201005626292254399 -7724942973273542131 chip.call_peak 6050992580982731763 Peak (bfilt) -7724942973273542131->6050992580982731763 480220395954890855 Peak -7724942973273542131->480220395954890855 480220395954890855->-6997699511394552925 480220395954890855->-3592973150452667571 480220395954890855->-5442430179241676664 480220395954890855->-6697005970645198275 8066935108281499383 chip.bam2ta -4688220392547833996 TAG-ALIGN 8066935108281499383->-4688220392547833996 -4688220392547833996->1898430436021170679 -4688220392547833996->-7724942973273542131 -6661288379895833583 chip.macs2_signal_track -4688220392547833996->-6661288379895833583 -4688220392547833996->-6710021377563234819 -4688220392547833996->-5442430179241676664 -4688220392547833996->-6697005970645198275 -4688220392547833996->6020864174337529281 4790614526184353997 chip.filter 6137181743035934530 SAMstats QC 4790614526184353997->6137181743035934530 -618089162378008784 Filt/deduped BAM 4790614526184353997->-618089162378008784 8639638570983492124 LibCmplx QC 4790614526184353997->8639638570983492124 -618089162378008784->8066935108281499383 -618089162378008784->2825986395806962473 -2519579143879441476 chip.align 352558295587969532 SAMstats QC -2519579143879441476->352558295587969532 -6278311555298796390 BAM -2519579143879441476->-6278311555298796390 -6278311555298796390->4790614526184353997 6800761940194701091 chip.xcor -4707052180701496822 XCOR Plot 6800761940194701091->-4707052180701496822 -5853041832003114342 BW FC -6661288379895833583->-5853041832003114342 -5411189255818634058 BW p-val -6661288379895833583->-5411189255818634058 -3684427053898964925 FASTQ R1 (1) -3684427053898964925->-2519579143879441476 -3684427053898964925->6800761940194701091 -5934331858741440879 FASTQ R2 (1) -5934331858741440879->-2519579143879441476 315534045703212529 chip.pool_ta_ctl 4165469260305517503 TAG-ALIGN 315534045703212529->4165469260305517503 4165469260305517503->-6861277771503759719 4165469260305517503->4499353223319900743 4165469260305517503->-5329904474908914607 4165469260305517503->7715120507511566338 4165469260305517503->-7724942973273542131 4165469260305517503->-6661288379895833583 4165469260305517503->-6710021377563234819 4165469260305517503->-5442430179241676664 4165469260305517503->-6697005970645198275 4165469260305517503->6020864174337529281 -3162198434328802981 chip.bam2ta_ctl 5597070925847373199 TAG-ALIGN -3162198434328802981->5597070925847373199 5597070925847373199->315534045703212529 -1530235468313415050 Filt/deduped BAM -1530235468313415050->-3162198434328802981 -1530235468313415050->2825986395806962473 -482583067908098055 chip.bam2ta_ctl 3612376778594013187 TAG-ALIGN -482583067908098055->3612376778594013187 3612376778594013187->315534045703212529 -4067755923994083681 Filt/deduped BAM -4067755923994083681->-482583067908098055 -4067755923994083681->2825986395806962473 383388110587541832 chip.bam2ta_ctl -2249045434427991706 TAG-ALIGN 383388110587541832->-2249045434427991706 -2249045434427991706->315534045703212529 -1528192398858524476 Filt/deduped BAM -1528192398858524476->383388110587541832 -1528192398858524476->2825986395806962473 1829900381377297115 chip.bam2ta_ctl 693865210306784826 TAG-ALIGN 1829900381377297115->693865210306784826 693865210306784826->315534045703212529 4846489336814624832 Filt/deduped BAM 4846489336814624832->1829900381377297115 4846489336814624832->2825986395806962473 -5162116121573537949 chip.bam2ta_ctl -2268682289341077685 TAG-ALIGN -5162116121573537949->-2268682289341077685 -2268682289341077685->315534045703212529 -2078922633264186690 Filt/deduped BAM -2078922633264186690->-5162116121573537949 -2078922633264186690->2825986395806962473 4633912492202692647 chip.bam2ta_ctl 7801678000398682302 TAG-ALIGN 4633912492202692647->7801678000398682302 7801678000398682302->315534045703212529 5685440642023919374 Filt/deduped BAM 5685440642023919374->4633912492202692647 5685440642023919374->2825986395806962473 5988039814328705125 IDR Plot ppr -6710021377563234819->5988039814328705125 -7005188946082870830 IDR Peak ppr -6710021377563234819->-7005188946082870830 -7005188946082870830->-6697005970645198275 -1970529920648662148 IDR Plot rep1_vs_rep2 -6997699511394552925->-1970529920648662148 -2683131777977992375 IDR NPeak rep1_vs_rep2 -6997699511394552925->-2683131777977992375 -2683131777977992375->-6697005970645198275 3961476385265496823 Overlap Peak rep1_vs_rep2 -3592973150452667571->3961476385265496823 3961476385265496823->-5442430179241676664 1545988581133834864 Overlap Peak optimal -5442430179241676664->1545988581133834864 -8279656745819001250 Overlap reproducibility -5442430179241676664->-8279656745819001250 -8257618917822653043 IDR Peak optimal -6697005970645198275->-8257618917822653043 -3095712281765261841 IDR reproducibility -6697005970645198275->-3095712281765261841 -2418303860913414683 Overlap Peak ppr 6020864174337529281->-2418303860913414683 -2418303860913414683->-5442430179241676664 7943304077419504832 JSD Plot 2825986395806962473->7943304077419504832

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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