File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF063SWH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF063SWH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF063SWH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF063SWH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF063SWH.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF895TQT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF895TQT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF895TQT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF895TQT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF895TQT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.614M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.614M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.614M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF063SWH.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF063SWH.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF063SWH.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF063SWH.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF063SWH.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF063SWH.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF063SWH.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF063SWH.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF895TQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF895TQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF895TQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF895TQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.434M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF895TQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF895TQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF895TQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF895TQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.434M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.614M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF063SWH.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF063SWH.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF063SWH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF063SWH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF063SWH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF063SWH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF063SWH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF063SWH.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF895TQT.crop_101-2bp.nodup.pr1_x_ctl.pooled.434M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF895TQT.crop_101-2bp.nodup.pr2_x_ctl.pooled.434M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF895TQT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF895TQT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF895TQT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF895TQT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF895TQT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF895TQT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF063SWH.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/b07bb69b-6753-4bc7-9ad6-c8e9d3e3126d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.614M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.614M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF063SWH.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/ce726d87-2d47-45e9-8b33-ffb64f2a2062/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF895TQT.crop_101-2bp.nodup_x_ctl.pooled.434M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5674869709305907289 chip.macs2_signal_track_pooled 2766405283880386255 BW FC -5674869709305907289->2766405283880386255 -6590438894204521731 BW p-val -5674869709305907289->-6590438894204521731 -4913841328321916014 chip.call_peak_pooled -5246728132532588444 Peak (bfilt) -4913841328321916014->-5246728132532588444 4325184858893657524 Peak -4913841328321916014->4325184858893657524 6654670014640940276 chip.idr_ppr 4325184858893657524->6654670014640940276 -1906713591406117510 chip.idr 4325184858893657524->-1906713591406117510 -9083995749122647813 chip.overlap 4325184858893657524->-9083995749122647813 6815387510456638492 chip.overlap_ppr 4325184858893657524->6815387510456638492 8478105634534277876 chip.pool_ta 1769075147694976779 TAG-ALIGN 8478105634534277876->1769075147694976779 1769075147694976779->-5674869709305907289 1769075147694976779->-4913841328321916014 1769075147694976779->6654670014640940276 1769075147694976779->-1906713591406117510 1769075147694976779->-9083995749122647813 1769075147694976779->6815387510456638492 7625122616258016215 chip.call_peak 664542885324640001 Peak (bfilt) 7625122616258016215->664542885324640001 -7016446047073971828 Peak 7625122616258016215->-7016446047073971828 -7016446047073971828->-1906713591406117510 -7016446047073971828->-9083995749122647813 1862748870058017589 chip.reproducibility_overlap -7016446047073971828->1862748870058017589 1821631326124084933 chip.reproducibility_idr -7016446047073971828->1821631326124084933 332164393541273527 chip.bam2ta -6775131535065917647 TAG-ALIGN 332164393541273527->-6775131535065917647 -6775131535065917647->8478105634534277876 -6775131535065917647->7625122616258016215 -6193304016336173603 chip.macs2_signal_track -6775131535065917647->-6193304016336173603 -6775131535065917647->6654670014640940276 -6775131535065917647->1862748870058017589 -6775131535065917647->1821631326124084933 -6775131535065917647->6815387510456638492 3755525764375861756 chip.filter 504784921697288775 SAMstats QC 3755525764375861756->504784921697288775 3776695151257038109 Filt/deduped BAM 3755525764375861756->3776695151257038109 364559445276521794 LibCmplx QC 3755525764375861756->364559445276521794 3776695151257038109->332164393541273527 -2385146426566008981 chip.jsd 3776695151257038109->-2385146426566008981 -8461365878399028084 chip.align 2040499598194515608 SAMstats QC -8461365878399028084->2040499598194515608 5080177047501934638 BAM -8461365878399028084->5080177047501934638 5080177047501934638->3755525764375861756 1266998855122470716 chip.xcor 6355445747451658369 XCOR Plot 1266998855122470716->6355445747451658369 6714639939787992733 BW FC -6193304016336173603->6714639939787992733 7795964647479272560 BW p-val -6193304016336173603->7795964647479272560 1280130808547956321 FASTQ R1 (1) 1280130808547956321->-8461365878399028084 1280130808547956321->1266998855122470716 9204259140288261911 FASTQ R2 (1) 9204259140288261911->-8461365878399028084 -6480635021276923631 chip.call_peak -1690854447388293989 Peak (bfilt) -6480635021276923631->-1690854447388293989 3987292881571812 Peak -6480635021276923631->3987292881571812 3987292881571812->-1906713591406117510 3987292881571812->-9083995749122647813 3987292881571812->1862748870058017589 3987292881571812->1821631326124084933 6112391108815126625 chip.bam2ta -8114248946112091800 TAG-ALIGN 6112391108815126625->-8114248946112091800 -8114248946112091800->8478105634534277876 -8114248946112091800->-6480635021276923631 -8850761578407339109 chip.macs2_signal_track -8114248946112091800->-8850761578407339109 -8114248946112091800->6654670014640940276 -8114248946112091800->1862748870058017589 -8114248946112091800->1821631326124084933 -8114248946112091800->6815387510456638492 -4274091807857567639 chip.filter -1570140880232866389 SAMstats QC -4274091807857567639->-1570140880232866389 7294237707387198659 Filt/deduped BAM -4274091807857567639->7294237707387198659 3276156202023691450 LibCmplx QC -4274091807857567639->3276156202023691450 7294237707387198659->6112391108815126625 7294237707387198659->-2385146426566008981 -1911023454816095110 chip.align 3270845021826716261 SAMstats QC -1911023454816095110->3270845021826716261 5300198418830829808 BAM -1911023454816095110->5300198418830829808 5300198418830829808->-4274091807857567639 -2486864826258258229 chip.xcor 882231775347385213 XCOR Plot -2486864826258258229->882231775347385213 1384718153209574240 BW FC -8850761578407339109->1384718153209574240 4151801296633432849 BW p-val -8850761578407339109->4151801296633432849 -1051111224553084511 FASTQ R1 (1) -1051111224553084511->-1911023454816095110 -1051111224553084511->-2486864826258258229 -2650430538977701305 FASTQ R2 (1) -2650430538977701305->-1911023454816095110 -1760472075087076796 chip.pool_ta_ctl -3059227238800345671 TAG-ALIGN -1760472075087076796->-3059227238800345671 -3059227238800345671->-5674869709305907289 -3059227238800345671->-4913841328321916014 -3059227238800345671->7625122616258016215 -3059227238800345671->-6193304016336173603 -3059227238800345671->-6480635021276923631 -3059227238800345671->-8850761578407339109 -3059227238800345671->6654670014640940276 -3059227238800345671->1862748870058017589 -3059227238800345671->1821631326124084933 -3059227238800345671->6815387510456638492 -7724285579918995664 chip.bam2ta_ctl -5772620181271999319 TAG-ALIGN -7724285579918995664->-5772620181271999319 -5772620181271999319->-1760472075087076796 2419566778805839179 Filt/deduped BAM 2419566778805839179->-7724285579918995664 2419566778805839179->-2385146426566008981 -709284977447118418 chip.bam2ta_ctl 2250128067075855777 TAG-ALIGN -709284977447118418->2250128067075855777 2250128067075855777->-1760472075087076796 -7848618319637258222 Filt/deduped BAM -7848618319637258222->-709284977447118418 -7848618319637258222->-2385146426566008981 -104547833163247574 chip.bam2ta_ctl -6486954511601147605 TAG-ALIGN -104547833163247574->-6486954511601147605 -6486954511601147605->-1760472075087076796 -7620643808564514259 Filt/deduped BAM -7620643808564514259->-104547833163247574 -7620643808564514259->-2385146426566008981 1436597458654496144 chip.bam2ta_ctl -6252904277996641301 TAG-ALIGN 1436597458654496144->-6252904277996641301 -6252904277996641301->-1760472075087076796 -2645034166678561356 Filt/deduped BAM -2645034166678561356->1436597458654496144 -2645034166678561356->-2385146426566008981 -3939900725740778796 chip.bam2ta_ctl -2606628488591009351 TAG-ALIGN -3939900725740778796->-2606628488591009351 -2606628488591009351->-1760472075087076796 3875871003121618043 Filt/deduped BAM 3875871003121618043->-3939900725740778796 3875871003121618043->-2385146426566008981 8530616680091505181 chip.bam2ta_ctl -175672225981388745 TAG-ALIGN 8530616680091505181->-175672225981388745 -175672225981388745->-1760472075087076796 4579146288661427311 Filt/deduped BAM 4579146288661427311->8530616680091505181 4579146288661427311->-2385146426566008981 3986573960570935375 chip.bam2ta_ctl 3820199419404857576 TAG-ALIGN 3986573960570935375->3820199419404857576 3820199419404857576->-1760472075087076796 2026072219036218021 Filt/deduped BAM 2026072219036218021->3986573960570935375 2026072219036218021->-2385146426566008981 4596105870185142299 chip.bam2ta_ctl -5512331284107648263 TAG-ALIGN 4596105870185142299->-5512331284107648263 -5512331284107648263->-1760472075087076796 -833026318149461955 Filt/deduped BAM -833026318149461955->4596105870185142299 -833026318149461955->-2385146426566008981 -5759695365533286245 chip.bam2ta_ctl -6703265295708947415 TAG-ALIGN -5759695365533286245->-6703265295708947415 -6703265295708947415->-1760472075087076796 -7582989747622032252 Filt/deduped BAM -7582989747622032252->-5759695365533286245 -7582989747622032252->-2385146426566008981 2751413489280607149 chip.bam2ta_ctl -6697637625152390677 TAG-ALIGN 2751413489280607149->-6697637625152390677 -6697637625152390677->-1760472075087076796 -7189224836906365321 Filt/deduped BAM -7189224836906365321->2751413489280607149 -7189224836906365321->-2385146426566008981 4110405235016059907 chip.bam2ta_ctl -6623858784610107182 TAG-ALIGN 4110405235016059907->-6623858784610107182 -6623858784610107182->-1760472075087076796 830649571351679391 Filt/deduped BAM 830649571351679391->4110405235016059907 830649571351679391->-2385146426566008981 -3497329987687541594 chip.bam2ta_ctl -1680202949648077975 TAG-ALIGN -3497329987687541594->-1680202949648077975 -1680202949648077975->-1760472075087076796 8483893490629804148 Filt/deduped BAM 8483893490629804148->-3497329987687541594 8483893490629804148->-2385146426566008981 7671215051668442789 chip.bam2ta_ctl -8336998165000597056 TAG-ALIGN 7671215051668442789->-8336998165000597056 -8336998165000597056->-1760472075087076796 4884246055640668221 Filt/deduped BAM 4884246055640668221->7671215051668442789 4884246055640668221->-2385146426566008981 -6299957146639434596 chip.bam2ta_ctl -4511065061960739524 TAG-ALIGN -6299957146639434596->-4511065061960739524 -4511065061960739524->-1760472075087076796 -4302604587755218553 Filt/deduped BAM -4302604587755218553->-6299957146639434596 -4302604587755218553->-2385146426566008981 8764994041315199937 chip.bam2ta_ctl 5893685393244215695 TAG-ALIGN 8764994041315199937->5893685393244215695 5893685393244215695->-1760472075087076796 9134017555866261442 Filt/deduped BAM 9134017555866261442->8764994041315199937 9134017555866261442->-2385146426566008981 5998070566129881714 chip.bam2ta_ctl 4760262252928989681 TAG-ALIGN 5998070566129881714->4760262252928989681 4760262252928989681->-1760472075087076796 -773539032756726700 Filt/deduped BAM -773539032756726700->5998070566129881714 -773539032756726700->-2385146426566008981 -106635505086700052 chip.bam2ta_ctl 4113331983315999547 TAG-ALIGN -106635505086700052->4113331983315999547 4113331983315999547->-1760472075087076796 -7391349274296077827 Filt/deduped BAM -7391349274296077827->-106635505086700052 -7391349274296077827->-2385146426566008981 -8179440239895309296 chip.bam2ta_ctl -8869995333850582416 TAG-ALIGN -8179440239895309296->-8869995333850582416 -8869995333850582416->-1760472075087076796 8597784534787128131 Filt/deduped BAM 8597784534787128131->-8179440239895309296 8597784534787128131->-2385146426566008981 -2696016802558950151 chip.bam2ta_ctl -3246295160472120589 TAG-ALIGN -2696016802558950151->-3246295160472120589 -3246295160472120589->-1760472075087076796 3458815883865329682 Filt/deduped BAM 3458815883865329682->-2696016802558950151 3458815883865329682->-2385146426566008981 4916260835946244951 chip.bam2ta_ctl -1923037221459507609 TAG-ALIGN 4916260835946244951->-1923037221459507609 -1923037221459507609->-1760472075087076796 -8281468237069146581 Filt/deduped BAM -8281468237069146581->4916260835946244951 -8281468237069146581->-2385146426566008981 -3174979373108373559 chip.bam2ta_ctl 5052854907807330185 TAG-ALIGN -3174979373108373559->5052854907807330185 5052854907807330185->-1760472075087076796 -601547574020589682 Filt/deduped BAM -601547574020589682->-3174979373108373559 -601547574020589682->-2385146426566008981 5059016125768483119 chip.bam2ta_ctl -3397793364239475433 TAG-ALIGN 5059016125768483119->-3397793364239475433 -3397793364239475433->-1760472075087076796 1377599352340004597 Filt/deduped BAM 1377599352340004597->5059016125768483119 1377599352340004597->-2385146426566008981 -65371886377910717 chip.bam2ta_ctl -7889292730962948329 TAG-ALIGN -65371886377910717->-7889292730962948329 -7889292730962948329->-1760472075087076796 -6466586169640466508 Filt/deduped BAM -6466586169640466508->-65371886377910717 -6466586169640466508->-2385146426566008981 8688553874631816528 chip.bam2ta_ctl -4302511725424723619 TAG-ALIGN 8688553874631816528->-4302511725424723619 -4302511725424723619->-1760472075087076796 2736802176616063098 Filt/deduped BAM 2736802176616063098->8688553874631816528 2736802176616063098->-2385146426566008981 -3909420762820310424 IDR Plot ppr 6654670014640940276->-3909420762820310424 3210934234557275973 IDR Peak ppr 6654670014640940276->3210934234557275973 3210934234557275973->1821631326124084933 2215185217637350592 IDR Plot rep1_vs_rep2 -1906713591406117510->2215185217637350592 2795115950274606991 IDR NPeak rep1_vs_rep2 -1906713591406117510->2795115950274606991 2795115950274606991->1821631326124084933 1706698657345470535 Overlap Peak rep1_vs_rep2 -9083995749122647813->1706698657345470535 1706698657345470535->1862748870058017589 2830037155631721514 Overlap Peak optimal 1862748870058017589->2830037155631721514 5328611651136717619 Overlap reproducibility 1862748870058017589->5328611651136717619 -1218840808766592103 IDR Peak optimal 1821631326124084933->-1218840808766592103 -5469063934713926457 IDR reproducibility 1821631326124084933->-5469063934713926457 8496456425809487555 Overlap Peak ppr 6815387510456638492->8496456425809487555 8496456425809487555->1862748870058017589 -2488381872943396695 JSD Plot -2385146426566008981->-2488381872943396695

UCSC browser tracks

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