File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF593YWJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF593YWJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF593YWJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF593YWJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF593YWJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF377KMZ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF377KMZ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF377KMZ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF377KMZ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF377KMZ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.437M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.437M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.437M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF593YWJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF593YWJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF593YWJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF593YWJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF593YWJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF593YWJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF593YWJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF593YWJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF377KMZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF377KMZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF377KMZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF377KMZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF377KMZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF377KMZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF377KMZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF377KMZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.437M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF593YWJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF593YWJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF593YWJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF593YWJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF593YWJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF593YWJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF593YWJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF593YWJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF377KMZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF377KMZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF377KMZ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF377KMZ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF377KMZ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF377KMZ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF377KMZ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF377KMZ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF593YWJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/bf976d41-fdc5-4625-a212-1f3f6d6a9fd3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.437M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.437M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF593YWJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/262f66c2-656e-40c9-bb67-bdb405ff75f2/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF377KMZ.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1330871576835845127 chip.macs2_signal_track_pooled 5403797714654243327 BW FC -1330871576835845127->5403797714654243327 8851319931992102260 BW p-val -1330871576835845127->8851319931992102260 -7053020575566974542 chip.call_peak_pooled -5905381096089076444 Peak (bfilt) -7053020575566974542->-5905381096089076444 3931106497293397731 Peak -7053020575566974542->3931106497293397731 8347041286875973139 chip.idr_ppr 3931106497293397731->8347041286875973139 -3496615903319249476 chip.idr 3931106497293397731->-3496615903319249476 -9136727543463305144 chip.overlap 3931106497293397731->-9136727543463305144 -3670852286135026963 chip.overlap_ppr 3931106497293397731->-3670852286135026963 9164681488558177325 chip.pool_ta -3913806407941425653 TAG-ALIGN 9164681488558177325->-3913806407941425653 -3913806407941425653->-1330871576835845127 -3913806407941425653->-7053020575566974542 -3913806407941425653->8347041286875973139 -3913806407941425653->-3496615903319249476 -3913806407941425653->-9136727543463305144 -3913806407941425653->-3670852286135026963 7397641853158457001 chip.call_peak -4406016947394789666 Peak (bfilt) 7397641853158457001->-4406016947394789666 5067678022471235287 Peak 7397641853158457001->5067678022471235287 5067678022471235287->-3496615903319249476 5067678022471235287->-9136727543463305144 -4145273446249784926 chip.reproducibility_overlap 5067678022471235287->-4145273446249784926 3816439553050419034 chip.reproducibility_idr 5067678022471235287->3816439553050419034 4174235797539410529 chip.bam2ta -1100843296698647072 TAG-ALIGN 4174235797539410529->-1100843296698647072 -1100843296698647072->9164681488558177325 -1100843296698647072->7397641853158457001 315850297348130789 chip.macs2_signal_track -1100843296698647072->315850297348130789 -1100843296698647072->8347041286875973139 -1100843296698647072->-4145273446249784926 -1100843296698647072->3816439553050419034 -1100843296698647072->-3670852286135026963 4852675514957939480 chip.filter -3349962529931340537 SAMstats QC 4852675514957939480->-3349962529931340537 4847766835892578319 Filt/deduped BAM 4852675514957939480->4847766835892578319 250349183873615720 LibCmplx QC 4852675514957939480->250349183873615720 4847766835892578319->4174235797539410529 3608759852522011444 chip.jsd 4847766835892578319->3608759852522011444 -8225553959537110503 chip.align 9179930045209758935 SAMstats QC -8225553959537110503->9179930045209758935 -552378573824374576 BAM -8225553959537110503->-552378573824374576 -552378573824374576->4852675514957939480 -484956296768253475 chip.xcor -3403141432860315083 XCOR Plot -484956296768253475->-3403141432860315083 9153417850777015681 BW FC 315850297348130789->9153417850777015681 -3214865834955223878 BW p-val 315850297348130789->-3214865834955223878 -9029303618919919807 FASTQ R1 (1) -9029303618919919807->-8225553959537110503 -9029303618919919807->-484956296768253475 -776558737075024252 FASTQ R2 (1) -776558737075024252->-8225553959537110503 -3108342768526542845 chip.call_peak -9194918191039614560 Peak (bfilt) -3108342768526542845->-9194918191039614560 -4565893476123880951 Peak -3108342768526542845->-4565893476123880951 -4565893476123880951->-3496615903319249476 -4565893476123880951->-9136727543463305144 -4565893476123880951->-4145273446249784926 -4565893476123880951->3816439553050419034 3752298697773992433 chip.bam2ta 2953008324231689540 TAG-ALIGN 3752298697773992433->2953008324231689540 2953008324231689540->9164681488558177325 2953008324231689540->-3108342768526542845 599377870864281803 chip.macs2_signal_track 2953008324231689540->599377870864281803 2953008324231689540->8347041286875973139 2953008324231689540->-4145273446249784926 2953008324231689540->3816439553050419034 2953008324231689540->-3670852286135026963 8813470929367382744 chip.filter 4735314829065352128 SAMstats QC 8813470929367382744->4735314829065352128 8736204936694431792 Filt/deduped BAM 8813470929367382744->8736204936694431792 5184215116562536471 LibCmplx QC 8813470929367382744->5184215116562536471 8736204936694431792->3752298697773992433 8736204936694431792->3608759852522011444 -750118884897602544 chip.align 8180310087797847160 SAMstats QC -750118884897602544->8180310087797847160 -2704829232127906232 BAM -750118884897602544->-2704829232127906232 -2704829232127906232->8813470929367382744 2451576462028719467 chip.xcor -1672220413400435161 XCOR Plot 2451576462028719467->-1672220413400435161 -7320764390356822625 BW FC 599377870864281803->-7320764390356822625 812138968332514268 BW p-val 599377870864281803->812138968332514268 -8702172021675444330 FASTQ R1 (1) -8702172021675444330->-750118884897602544 -8702172021675444330->2451576462028719467 -21857788045592537 FASTQ R2 (1) -21857788045592537->-750118884897602544 90655674610734247 chip.pool_ta_ctl 8044843362605246261 TAG-ALIGN 90655674610734247->8044843362605246261 8044843362605246261->-1330871576835845127 8044843362605246261->-7053020575566974542 8044843362605246261->7397641853158457001 8044843362605246261->315850297348130789 8044843362605246261->-3108342768526542845 8044843362605246261->599377870864281803 8044843362605246261->8347041286875973139 8044843362605246261->-4145273446249784926 8044843362605246261->3816439553050419034 8044843362605246261->-3670852286135026963 6266072583805040337 chip.bam2ta_ctl -786126471195586696 TAG-ALIGN 6266072583805040337->-786126471195586696 -786126471195586696->90655674610734247 8935508921740561570 Filt/deduped BAM 8935508921740561570->6266072583805040337 8935508921740561570->3608759852522011444 8507243491916271755 chip.bam2ta_ctl 487094711228742660 TAG-ALIGN 8507243491916271755->487094711228742660 487094711228742660->90655674610734247 4051905272280312311 Filt/deduped BAM 4051905272280312311->8507243491916271755 4051905272280312311->3608759852522011444 -4558478453115408442 chip.bam2ta_ctl 5534675826924944388 TAG-ALIGN -4558478453115408442->5534675826924944388 5534675826924944388->90655674610734247 4105696551095789747 Filt/deduped BAM 4105696551095789747->-4558478453115408442 4105696551095789747->3608759852522011444 -1637677312790671054 chip.bam2ta_ctl 5373230601045642894 TAG-ALIGN -1637677312790671054->5373230601045642894 5373230601045642894->90655674610734247 -4637973481881481482 Filt/deduped BAM -4637973481881481482->-1637677312790671054 -4637973481881481482->3608759852522011444 4652747440359027849 chip.bam2ta_ctl 4247305677711873345 TAG-ALIGN 4652747440359027849->4247305677711873345 4247305677711873345->90655674610734247 9093094519202216225 Filt/deduped BAM 9093094519202216225->4652747440359027849 9093094519202216225->3608759852522011444 6131246859177558681 chip.bam2ta_ctl 8445626062259592650 TAG-ALIGN 6131246859177558681->8445626062259592650 8445626062259592650->90655674610734247 9211660513380484775 Filt/deduped BAM 9211660513380484775->6131246859177558681 9211660513380484775->3608759852522011444 -7396079443840257472 chip.bam2ta_ctl 1801650760893021121 TAG-ALIGN -7396079443840257472->1801650760893021121 1801650760893021121->90655674610734247 1848695415023036222 Filt/deduped BAM 1848695415023036222->-7396079443840257472 1848695415023036222->3608759852522011444 -5137677602634203513 chip.bam2ta_ctl 6426372172643770894 TAG-ALIGN -5137677602634203513->6426372172643770894 6426372172643770894->90655674610734247 8639681054588672899 Filt/deduped BAM 8639681054588672899->-5137677602634203513 8639681054588672899->3608759852522011444 -5993906810981793591 chip.bam2ta_ctl 327787441561934875 TAG-ALIGN -5993906810981793591->327787441561934875 327787441561934875->90655674610734247 -3373680946167946177 Filt/deduped BAM -3373680946167946177->-5993906810981793591 -3373680946167946177->3608759852522011444 5715734358305125672 chip.bam2ta_ctl 6168871257543797018 TAG-ALIGN 5715734358305125672->6168871257543797018 6168871257543797018->90655674610734247 -531245010222781070 Filt/deduped BAM -531245010222781070->5715734358305125672 -531245010222781070->3608759852522011444 5083049871161574983 chip.bam2ta_ctl 7807636186240729625 TAG-ALIGN 5083049871161574983->7807636186240729625 7807636186240729625->90655674610734247 8570322509744279637 Filt/deduped BAM 8570322509744279637->5083049871161574983 8570322509744279637->3608759852522011444 3312906583703567373 chip.bam2ta_ctl -5650263982812827335 TAG-ALIGN 3312906583703567373->-5650263982812827335 -5650263982812827335->90655674610734247 -2822052313611549780 Filt/deduped BAM -2822052313611549780->3312906583703567373 -2822052313611549780->3608759852522011444 -2728448253816300549 chip.bam2ta_ctl -2540916976499160534 TAG-ALIGN -2728448253816300549->-2540916976499160534 -2540916976499160534->90655674610734247 4813115975205155990 Filt/deduped BAM 4813115975205155990->-2728448253816300549 4813115975205155990->3608759852522011444 174013617984192428 chip.bam2ta_ctl -6735582185634921787 TAG-ALIGN 174013617984192428->-6735582185634921787 -6735582185634921787->90655674610734247 5391753405200568727 Filt/deduped BAM 5391753405200568727->174013617984192428 5391753405200568727->3608759852522011444 -9118524358011141946 chip.bam2ta_ctl 2233539868458301643 TAG-ALIGN -9118524358011141946->2233539868458301643 2233539868458301643->90655674610734247 6592115299186119934 Filt/deduped BAM 6592115299186119934->-9118524358011141946 6592115299186119934->3608759852522011444 3620187520882880599 chip.bam2ta_ctl -3887848963027382640 TAG-ALIGN 3620187520882880599->-3887848963027382640 -3887848963027382640->90655674610734247 -7916116837414748603 Filt/deduped BAM -7916116837414748603->3620187520882880599 -7916116837414748603->3608759852522011444 4947175795794916755 chip.bam2ta_ctl 8285995490273330614 TAG-ALIGN 4947175795794916755->8285995490273330614 8285995490273330614->90655674610734247 6441340568381086198 Filt/deduped BAM 6441340568381086198->4947175795794916755 6441340568381086198->3608759852522011444 -6515503906396422194 chip.bam2ta_ctl 6098931423328005744 TAG-ALIGN -6515503906396422194->6098931423328005744 6098931423328005744->90655674610734247 -2497241058427149454 Filt/deduped BAM -2497241058427149454->-6515503906396422194 -2497241058427149454->3608759852522011444 -1341411056061041632 chip.bam2ta_ctl 4158593508628387018 TAG-ALIGN -1341411056061041632->4158593508628387018 4158593508628387018->90655674610734247 3450977955259205039 Filt/deduped BAM 3450977955259205039->-1341411056061041632 3450977955259205039->3608759852522011444 5702936369899507335 chip.bam2ta_ctl -3219020763017838098 TAG-ALIGN 5702936369899507335->-3219020763017838098 -3219020763017838098->90655674610734247 -5853662950866766985 Filt/deduped BAM -5853662950866766985->5702936369899507335 -5853662950866766985->3608759852522011444 6002193217565144509 chip.bam2ta_ctl -6011197914873535439 TAG-ALIGN 6002193217565144509->-6011197914873535439 -6011197914873535439->90655674610734247 1480382757365262885 Filt/deduped BAM 1480382757365262885->6002193217565144509 1480382757365262885->3608759852522011444 2955369096657434949 chip.bam2ta_ctl 1077303637898141610 TAG-ALIGN 2955369096657434949->1077303637898141610 1077303637898141610->90655674610734247 8725500168935348539 Filt/deduped BAM 8725500168935348539->2955369096657434949 8725500168935348539->3608759852522011444 452446351242653415 chip.bam2ta_ctl -2720126724267145083 TAG-ALIGN 452446351242653415->-2720126724267145083 -2720126724267145083->90655674610734247 -4111822768140237051 Filt/deduped BAM -4111822768140237051->452446351242653415 -4111822768140237051->3608759852522011444 3485916198514405220 chip.bam2ta_ctl 2100048517829125231 TAG-ALIGN 3485916198514405220->2100048517829125231 2100048517829125231->90655674610734247 6587899081166279451 Filt/deduped BAM 6587899081166279451->3485916198514405220 6587899081166279451->3608759852522011444 -1605703012002897058 IDR Plot ppr 8347041286875973139->-1605703012002897058 -2120191140470599756 IDR Peak ppr 8347041286875973139->-2120191140470599756 -2120191140470599756->3816439553050419034 -7716751342318624118 IDR Plot rep1_vs_rep2 -3496615903319249476->-7716751342318624118 -5911045746228147710 IDR NPeak rep1_vs_rep2 -3496615903319249476->-5911045746228147710 -5911045746228147710->3816439553050419034 -7067657117541295386 Overlap Peak rep1_vs_rep2 -9136727543463305144->-7067657117541295386 -7067657117541295386->-4145273446249784926 2969945479753586453 Overlap Peak optimal -4145273446249784926->2969945479753586453 8921415545470645817 Overlap reproducibility -4145273446249784926->8921415545470645817 -2780740143992332075 IDR Peak optimal 3816439553050419034->-2780740143992332075 5819480892259585333 IDR reproducibility 3816439553050419034->5819480892259585333 7189315925385095380 Overlap Peak ppr -3670852286135026963->7189315925385095380 7189315925385095380->-4145273446249784926 -7099095806001325875 JSD Plot 3608759852522011444->-7099095806001325875

UCSC browser tracks

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