File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF945NKO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF945NKO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF945NKO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF945NKO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF945NKO.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF147LKM.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF147LKM.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF147LKM.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF147LKM.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF147LKM.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.550M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.550M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.550M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF945NKO.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF945NKO.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF945NKO.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF945NKO.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF945NKO.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF945NKO.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF945NKO.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF945NKO.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF147LKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF147LKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF147LKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF147LKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF147LKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF147LKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF147LKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF147LKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.550M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF945NKO.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF945NKO.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF945NKO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF945NKO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF945NKO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF945NKO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF945NKO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF945NKO.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF147LKM.crop_101-2bp.nodup.pr1_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF147LKM.crop_101-2bp.nodup.pr2_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF147LKM.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF147LKM.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF147LKM.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF147LKM.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF147LKM.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF147LKM.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF945NKO.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d1d5f788-9255-456d-8cf1-01295b45d56d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.550M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.550M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF945NKO.crop_101-2bp.nodup_x_ctl.pooled.305M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/64f7e82e-4242-4587-bc8a-5e626c3c8d5f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF147LKM.crop_101-2bp.nodup_x_ctl.pooled.245M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -4580657256178346361 chip.macs2_signal_track_pooled -3720240361793864373 BW FC -4580657256178346361->-3720240361793864373 -2530942261310081126 BW p-val -4580657256178346361->-2530942261310081126 -8140667836048374541 chip.call_peak_pooled 2873914968934079810 Peak (bfilt) -8140667836048374541->2873914968934079810 -3136162361673244285 Peak -8140667836048374541->-3136162361673244285 8094453378667614374 chip.idr_ppr -3136162361673244285->8094453378667614374 -4631879293893733786 chip.idr -3136162361673244285->-4631879293893733786 -2261900883270934489 chip.overlap -3136162361673244285->-2261900883270934489 2520270752459658436 chip.overlap_ppr -3136162361673244285->2520270752459658436 -2736117743155807635 chip.pool_ta 7103252125015062248 TAG-ALIGN -2736117743155807635->7103252125015062248 7103252125015062248->-4580657256178346361 7103252125015062248->-8140667836048374541 7103252125015062248->8094453378667614374 7103252125015062248->-4631879293893733786 7103252125015062248->-2261900883270934489 7103252125015062248->2520270752459658436 7449912150827616481 chip.call_peak -2759227030583528208 Peak (bfilt) 7449912150827616481->-2759227030583528208 -8472189430660227011 Peak 7449912150827616481->-8472189430660227011 -8472189430660227011->-4631879293893733786 -8472189430660227011->-2261900883270934489 -7708430773681768857 chip.reproducibility_overlap -8472189430660227011->-7708430773681768857 6817083408135288142 chip.reproducibility_idr -8472189430660227011->6817083408135288142 2408656381652841741 chip.bam2ta 8614458354073734870 TAG-ALIGN 2408656381652841741->8614458354073734870 8614458354073734870->-2736117743155807635 8614458354073734870->7449912150827616481 7534717215247850399 chip.macs2_signal_track 8614458354073734870->7534717215247850399 8614458354073734870->8094453378667614374 8614458354073734870->-7708430773681768857 8614458354073734870->6817083408135288142 8614458354073734870->2520270752459658436 3024271914737266866 chip.filter -7509408830146424733 SAMstats QC 3024271914737266866->-7509408830146424733 4076185062513445256 Filt/deduped BAM 3024271914737266866->4076185062513445256 -1522417261503194193 LibCmplx QC 3024271914737266866->-1522417261503194193 4076185062513445256->2408656381652841741 2055883724734683469 chip.jsd 4076185062513445256->2055883724734683469 -5331650322855428409 chip.align 5007659881811783939 SAMstats QC -5331650322855428409->5007659881811783939 8574242969256681252 BAM -5331650322855428409->8574242969256681252 8574242969256681252->3024271914737266866 -3199119408106458823 chip.xcor -5842638980320429558 XCOR Plot -3199119408106458823->-5842638980320429558 7425456026139460262 BW FC 7534717215247850399->7425456026139460262 -2636814317319581730 BW p-val 7534717215247850399->-2636814317319581730 2063106982929927639 FASTQ R1 (1) 2063106982929927639->-5331650322855428409 2063106982929927639->-3199119408106458823 4007590263888086643 FASTQ R2 (1) 4007590263888086643->-5331650322855428409 -3053678563462554253 chip.call_peak -8797715164426003626 Peak (bfilt) -3053678563462554253->-8797715164426003626 -1335247951410719480 Peak -3053678563462554253->-1335247951410719480 -1335247951410719480->-4631879293893733786 -1335247951410719480->-2261900883270934489 -1335247951410719480->-7708430773681768857 -1335247951410719480->6817083408135288142 6354340917508596294 chip.bam2ta 2287684430464690481 TAG-ALIGN 6354340917508596294->2287684430464690481 2287684430464690481->-2736117743155807635 2287684430464690481->-3053678563462554253 -2642630523914489461 chip.macs2_signal_track 2287684430464690481->-2642630523914489461 2287684430464690481->8094453378667614374 2287684430464690481->-7708430773681768857 2287684430464690481->6817083408135288142 2287684430464690481->2520270752459658436 9068871384328128073 chip.filter -4535477915982026298 SAMstats QC 9068871384328128073->-4535477915982026298 3133566731986813745 Filt/deduped BAM 9068871384328128073->3133566731986813745 -8038109427118890964 LibCmplx QC 9068871384328128073->-8038109427118890964 3133566731986813745->6354340917508596294 3133566731986813745->2055883724734683469 6012497219465097850 chip.align -3379030531024231887 SAMstats QC 6012497219465097850->-3379030531024231887 -8792888054551387848 BAM 6012497219465097850->-8792888054551387848 -8792888054551387848->9068871384328128073 8055921218382289974 chip.xcor -6326801535766142032 XCOR Plot 8055921218382289974->-6326801535766142032 3711106859992355850 BW FC -2642630523914489461->3711106859992355850 8698270457872318449 BW p-val -2642630523914489461->8698270457872318449 -6386427635892737305 FASTQ R1 (1) -6386427635892737305->6012497219465097850 -6386427635892737305->8055921218382289974 3902679872486019723 FASTQ R2 (1) 3902679872486019723->6012497219465097850 -115199248325462623 chip.pool_ta_ctl 7227404147993465607 TAG-ALIGN -115199248325462623->7227404147993465607 7227404147993465607->-4580657256178346361 7227404147993465607->-8140667836048374541 7227404147993465607->7449912150827616481 7227404147993465607->7534717215247850399 7227404147993465607->-3053678563462554253 7227404147993465607->-2642630523914489461 7227404147993465607->8094453378667614374 7227404147993465607->-7708430773681768857 7227404147993465607->6817083408135288142 7227404147993465607->2520270752459658436 9024379134612504504 chip.bam2ta_ctl -3302491938136235044 TAG-ALIGN 9024379134612504504->-3302491938136235044 -3302491938136235044->-115199248325462623 1228642147210303343 Filt/deduped BAM 1228642147210303343->9024379134612504504 1228642147210303343->2055883724734683469 -6343468754232230940 chip.bam2ta_ctl -5390628094425556132 TAG-ALIGN -6343468754232230940->-5390628094425556132 -5390628094425556132->-115199248325462623 3450039066143464232 Filt/deduped BAM 3450039066143464232->-6343468754232230940 3450039066143464232->2055883724734683469 206172392029596106 chip.bam2ta_ctl -8648698574325957650 TAG-ALIGN 206172392029596106->-8648698574325957650 -8648698574325957650->-115199248325462623 -2857365956053618383 Filt/deduped BAM -2857365956053618383->206172392029596106 -2857365956053618383->2055883724734683469 791083601635223592 chip.bam2ta_ctl -4709461233095134723 TAG-ALIGN 791083601635223592->-4709461233095134723 -4709461233095134723->-115199248325462623 -6236312085728970483 Filt/deduped BAM -6236312085728970483->791083601635223592 -6236312085728970483->2055883724734683469 4132834035542140254 chip.bam2ta_ctl 5656135264190068610 TAG-ALIGN 4132834035542140254->5656135264190068610 5656135264190068610->-115199248325462623 -2828932423553190129 Filt/deduped BAM -2828932423553190129->4132834035542140254 -2828932423553190129->2055883724734683469 5329978870636722107 chip.bam2ta_ctl 7770415203223743519 TAG-ALIGN 5329978870636722107->7770415203223743519 7770415203223743519->-115199248325462623 6278080372555848186 Filt/deduped BAM 6278080372555848186->5329978870636722107 6278080372555848186->2055883724734683469 -6545346370331867104 chip.bam2ta_ctl -7269160869290952141 TAG-ALIGN -6545346370331867104->-7269160869290952141 -7269160869290952141->-115199248325462623 8320438060031247488 Filt/deduped BAM 8320438060031247488->-6545346370331867104 8320438060031247488->2055883724734683469 -1370913346955564557 chip.bam2ta_ctl -2779391686391556437 TAG-ALIGN -1370913346955564557->-2779391686391556437 -2779391686391556437->-115199248325462623 -5278286732744047808 Filt/deduped BAM -5278286732744047808->-1370913346955564557 -5278286732744047808->2055883724734683469 -5892542787690824703 chip.bam2ta_ctl -5733849959570755440 TAG-ALIGN -5892542787690824703->-5733849959570755440 -5733849959570755440->-115199248325462623 9032695088732545578 Filt/deduped BAM 9032695088732545578->-5892542787690824703 9032695088732545578->2055883724734683469 -1654283969739660018 chip.bam2ta_ctl 2651056616444117758 TAG-ALIGN -1654283969739660018->2651056616444117758 2651056616444117758->-115199248325462623 1445115110902628452 Filt/deduped BAM 1445115110902628452->-1654283969739660018 1445115110902628452->2055883724734683469 -3756046788156665630 chip.bam2ta_ctl -6049256417464484236 TAG-ALIGN -3756046788156665630->-6049256417464484236 -6049256417464484236->-115199248325462623 2645894298696922619 Filt/deduped BAM 2645894298696922619->-3756046788156665630 2645894298696922619->2055883724734683469 8483257208691379011 chip.bam2ta_ctl 6633928159567032592 TAG-ALIGN 8483257208691379011->6633928159567032592 6633928159567032592->-115199248325462623 2640189450235651949 Filt/deduped BAM 2640189450235651949->8483257208691379011 2640189450235651949->2055883724734683469 4810032181564506803 chip.bam2ta_ctl -4641782100773568153 TAG-ALIGN 4810032181564506803->-4641782100773568153 -4641782100773568153->-115199248325462623 243792524934874953 Filt/deduped BAM 243792524934874953->4810032181564506803 243792524934874953->2055883724734683469 8517095964182880994 chip.bam2ta_ctl -907396624868608087 TAG-ALIGN 8517095964182880994->-907396624868608087 -907396624868608087->-115199248325462623 7405066209573217745 Filt/deduped BAM 7405066209573217745->8517095964182880994 7405066209573217745->2055883724734683469 9073639746900309478 chip.bam2ta_ctl -425289217785870268 TAG-ALIGN 9073639746900309478->-425289217785870268 -425289217785870268->-115199248325462623 -6912227250454405 Filt/deduped BAM -6912227250454405->9073639746900309478 -6912227250454405->2055883724734683469 -6471034654882052838 chip.bam2ta_ctl 5439596690773285427 TAG-ALIGN -6471034654882052838->5439596690773285427 5439596690773285427->-115199248325462623 -7727346046906373455 Filt/deduped BAM -7727346046906373455->-6471034654882052838 -7727346046906373455->2055883724734683469 -8442993675922618525 chip.bam2ta_ctl -6566055265635206633 TAG-ALIGN -8442993675922618525->-6566055265635206633 -6566055265635206633->-115199248325462623 -3641753476781321883 Filt/deduped BAM -3641753476781321883->-8442993675922618525 -3641753476781321883->2055883724734683469 8074546764178752772 chip.bam2ta_ctl -6301662406387959787 TAG-ALIGN 8074546764178752772->-6301662406387959787 -6301662406387959787->-115199248325462623 5610105486010848699 Filt/deduped BAM 5610105486010848699->8074546764178752772 5610105486010848699->2055883724734683469 7813355524955376801 chip.bam2ta_ctl 7639931098562480055 TAG-ALIGN 7813355524955376801->7639931098562480055 7639931098562480055->-115199248325462623 -2137870535424450355 Filt/deduped BAM -2137870535424450355->7813355524955376801 -2137870535424450355->2055883724734683469 1766669533515610841 chip.bam2ta_ctl -5480647241438704346 TAG-ALIGN 1766669533515610841->-5480647241438704346 -5480647241438704346->-115199248325462623 -6887216554136685271 Filt/deduped BAM -6887216554136685271->1766669533515610841 -6887216554136685271->2055883724734683469 3760855582012502534 chip.bam2ta_ctl 3771102993450893544 TAG-ALIGN 3760855582012502534->3771102993450893544 3771102993450893544->-115199248325462623 -9038269336988503443 Filt/deduped BAM -9038269336988503443->3760855582012502534 -9038269336988503443->2055883724734683469 -5853710781010972986 chip.bam2ta_ctl 3294186068553778350 TAG-ALIGN -5853710781010972986->3294186068553778350 3294186068553778350->-115199248325462623 5607753545636054264 Filt/deduped BAM 5607753545636054264->-5853710781010972986 5607753545636054264->2055883724734683469 -1391980719035823640 chip.bam2ta_ctl 7963870902748560931 TAG-ALIGN -1391980719035823640->7963870902748560931 7963870902748560931->-115199248325462623 8160611415922726408 Filt/deduped BAM 8160611415922726408->-1391980719035823640 8160611415922726408->2055883724734683469 5789962506557570789 chip.bam2ta_ctl 4891137578119365517 TAG-ALIGN 5789962506557570789->4891137578119365517 4891137578119365517->-115199248325462623 5965206625360451128 Filt/deduped BAM 5965206625360451128->5789962506557570789 5965206625360451128->2055883724734683469 505241646361516446 IDR Plot ppr 8094453378667614374->505241646361516446 -6368521797702950749 IDR Peak ppr 8094453378667614374->-6368521797702950749 -6368521797702950749->6817083408135288142 2370905491157441394 IDR Plot rep1_vs_rep2 -4631879293893733786->2370905491157441394 -2897888244629007672 IDR NPeak rep1_vs_rep2 -4631879293893733786->-2897888244629007672 -2897888244629007672->6817083408135288142 3739600174972752385 Overlap Peak rep1_vs_rep2 -2261900883270934489->3739600174972752385 3739600174972752385->-7708430773681768857 9075914294386473828 Overlap Peak optimal -7708430773681768857->9075914294386473828 -1855468118977359842 Overlap reproducibility -7708430773681768857->-1855468118977359842 8553539974779290687 IDR Peak optimal 6817083408135288142->8553539974779290687 31101537213316852 IDR reproducibility 6817083408135288142->31101537213316852 -4962505542804156420 Overlap Peak ppr 2520270752459658436->-4962505542804156420 -4962505542804156420->-7708430773681768857 8898675524432444991 JSD Plot 2055883724734683469->8898675524432444991

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