File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF173JBW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF173JBW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF173JBW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF173JBW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF173JBW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF662MFL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF662MFL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF662MFL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF662MFL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF662MFL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.540M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.540M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.540M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF173JBW.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF173JBW.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF173JBW.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF173JBW.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF173JBW.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF173JBW.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF173JBW.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF173JBW.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF662MFL.crop_101-2bp.nodup.pr1_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF662MFL.crop_101-2bp.nodup.pr1_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF662MFL.crop_101-2bp.nodup.pr1_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF662MFL.crop_101-2bp.nodup.pr1_x_ctl.pooled.283M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF662MFL.crop_101-2bp.nodup.pr2_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF662MFL.crop_101-2bp.nodup.pr2_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF662MFL.crop_101-2bp.nodup.pr2_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF662MFL.crop_101-2bp.nodup.pr2_x_ctl.pooled.283M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.540M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF173JBW.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF173JBW.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF173JBW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF173JBW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF173JBW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF173JBW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF173JBW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF173JBW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF662MFL.crop_101-2bp.nodup.pr1_x_ctl.pooled.283M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF662MFL.crop_101-2bp.nodup.pr2_x_ctl.pooled.283M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF662MFL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF662MFL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF662MFL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF662MFL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF662MFL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF662MFL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF173JBW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d6fe648f-cde5-4f56-8faa-3f3381706d18/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.540M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.540M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF173JBW.crop_101-2bp.nodup_x_ctl.pooled.257M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a0dacd3d-2b40-48ee-a117-d2785600a77f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF662MFL.crop_101-2bp.nodup_x_ctl.pooled.283M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3305325012372158545 chip.macs2_signal_track_pooled -3492941695466451626 BW FC 3305325012372158545->-3492941695466451626 -8655044185886186864 BW p-val 3305325012372158545->-8655044185886186864 4224181117958717070 chip.call_peak_pooled -7048616796275999733 Peak (bfilt) 4224181117958717070->-7048616796275999733 1685204041478779946 Peak 4224181117958717070->1685204041478779946 6510361099840164649 chip.idr_ppr 1685204041478779946->6510361099840164649 5418588420630758573 chip.idr 1685204041478779946->5418588420630758573 -8238418410802450136 chip.overlap 1685204041478779946->-8238418410802450136 -8693389198017880792 chip.overlap_ppr 1685204041478779946->-8693389198017880792 3200450211601776106 chip.pool_ta 2614722013681460873 TAG-ALIGN 3200450211601776106->2614722013681460873 2614722013681460873->3305325012372158545 2614722013681460873->4224181117958717070 2614722013681460873->6510361099840164649 2614722013681460873->5418588420630758573 2614722013681460873->-8238418410802450136 2614722013681460873->-8693389198017880792 -4051475881265928831 chip.call_peak 8647659209484552763 Peak (bfilt) -4051475881265928831->8647659209484552763 -31848597384151371 Peak -4051475881265928831->-31848597384151371 -31848597384151371->5418588420630758573 -31848597384151371->-8238418410802450136 -2210422244945697537 chip.reproducibility_overlap -31848597384151371->-2210422244945697537 -8745689328319187957 chip.reproducibility_idr -31848597384151371->-8745689328319187957 5783782677428154880 chip.bam2ta -293599976361805601 TAG-ALIGN 5783782677428154880->-293599976361805601 -293599976361805601->3200450211601776106 -293599976361805601->-4051475881265928831 6923295186214145357 chip.macs2_signal_track -293599976361805601->6923295186214145357 -293599976361805601->6510361099840164649 -293599976361805601->-2210422244945697537 -293599976361805601->-8745689328319187957 -293599976361805601->-8693389198017880792 9123713879979101095 chip.filter 5553967025380781628 SAMstats QC 9123713879979101095->5553967025380781628 7638091333829436664 Filt/deduped BAM 9123713879979101095->7638091333829436664 5258084799177126139 LibCmplx QC 9123713879979101095->5258084799177126139 7638091333829436664->5783782677428154880 1774065407316675932 chip.jsd 7638091333829436664->1774065407316675932 -5842691112660186534 chip.align -8079010813485893682 SAMstats QC -5842691112660186534->-8079010813485893682 -5520020298528063748 BAM -5842691112660186534->-5520020298528063748 -5520020298528063748->9123713879979101095 -2327286353366924373 chip.xcor -899768992201885464 XCOR Plot -2327286353366924373->-899768992201885464 -8143038846821553812 BW FC 6923295186214145357->-8143038846821553812 -2134620939847226628 BW p-val 6923295186214145357->-2134620939847226628 -6130349178858530133 FASTQ R1 (1) -6130349178858530133->-5842691112660186534 -6130349178858530133->-2327286353366924373 -9192463519594349927 FASTQ R2 (1) -9192463519594349927->-5842691112660186534 -5161720269325095764 chip.call_peak -4034303563945053293 Peak (bfilt) -5161720269325095764->-4034303563945053293 1775294372723198192 Peak -5161720269325095764->1775294372723198192 1775294372723198192->5418588420630758573 1775294372723198192->-8238418410802450136 1775294372723198192->-2210422244945697537 1775294372723198192->-8745689328319187957 -2238795671945174406 chip.bam2ta 1972744480496573980 TAG-ALIGN -2238795671945174406->1972744480496573980 1972744480496573980->3200450211601776106 1972744480496573980->-5161720269325095764 1654297060878163963 chip.macs2_signal_track 1972744480496573980->1654297060878163963 1972744480496573980->6510361099840164649 1972744480496573980->-2210422244945697537 1972744480496573980->-8745689328319187957 1972744480496573980->-8693389198017880792 -9106071848902359699 chip.filter -4113309734589198780 SAMstats QC -9106071848902359699->-4113309734589198780 1931268954220952628 Filt/deduped BAM -9106071848902359699->1931268954220952628 -8819771028641251709 LibCmplx QC -9106071848902359699->-8819771028641251709 1931268954220952628->-2238795671945174406 1931268954220952628->1774065407316675932 6939434053383824572 chip.align -3556698068202134913 SAMstats QC 6939434053383824572->-3556698068202134913 -6691172808814126919 BAM 6939434053383824572->-6691172808814126919 -6691172808814126919->-9106071848902359699 -6339695140502597453 chip.xcor 6475947172433807719 XCOR Plot -6339695140502597453->6475947172433807719 -7418208765244405980 BW FC 1654297060878163963->-7418208765244405980 5497789461995725065 BW p-val 1654297060878163963->5497789461995725065 451213559573738583 FASTQ R1 (1) 451213559573738583->6939434053383824572 451213559573738583->-6339695140502597453 -13194244935702055 FASTQ R2 (1) -13194244935702055->6939434053383824572 5487040356938207280 chip.pool_ta_ctl -6224289961199533125 TAG-ALIGN 5487040356938207280->-6224289961199533125 -6224289961199533125->3305325012372158545 -6224289961199533125->4224181117958717070 -6224289961199533125->-4051475881265928831 -6224289961199533125->6923295186214145357 -6224289961199533125->-5161720269325095764 -6224289961199533125->1654297060878163963 -6224289961199533125->6510361099840164649 -6224289961199533125->-2210422244945697537 -6224289961199533125->-8745689328319187957 -6224289961199533125->-8693389198017880792 5502840808100384264 chip.bam2ta_ctl -3744122774309749265 TAG-ALIGN 5502840808100384264->-3744122774309749265 -3744122774309749265->5487040356938207280 -2894870297781043811 Filt/deduped BAM -2894870297781043811->5502840808100384264 -2894870297781043811->1774065407316675932 4616963006892201929 chip.bam2ta_ctl -5732064549704735945 TAG-ALIGN 4616963006892201929->-5732064549704735945 -5732064549704735945->5487040356938207280 -4644427647128320965 Filt/deduped BAM -4644427647128320965->4616963006892201929 -4644427647128320965->1774065407316675932 4756682454024454900 chip.bam2ta_ctl 124347079645239692 TAG-ALIGN 4756682454024454900->124347079645239692 124347079645239692->5487040356938207280 7575266230725314790 Filt/deduped BAM 7575266230725314790->4756682454024454900 7575266230725314790->1774065407316675932 -7926048764802445583 chip.bam2ta_ctl -2380065498189284720 TAG-ALIGN -7926048764802445583->-2380065498189284720 -2380065498189284720->5487040356938207280 6601631282399356600 Filt/deduped BAM 6601631282399356600->-7926048764802445583 6601631282399356600->1774065407316675932 -3446232932640629342 chip.bam2ta_ctl -8916208088713999380 TAG-ALIGN -3446232932640629342->-8916208088713999380 -8916208088713999380->5487040356938207280 -2643381057896928666 Filt/deduped BAM -2643381057896928666->-3446232932640629342 -2643381057896928666->1774065407316675932 -708012029203907947 chip.bam2ta_ctl -3175552870465250657 TAG-ALIGN -708012029203907947->-3175552870465250657 -3175552870465250657->5487040356938207280 -3662944413855748381 Filt/deduped BAM -3662944413855748381->-708012029203907947 -3662944413855748381->1774065407316675932 1991181211294688014 chip.bam2ta_ctl 552540360256489387 TAG-ALIGN 1991181211294688014->552540360256489387 552540360256489387->5487040356938207280 4026912876647635137 Filt/deduped BAM 4026912876647635137->1991181211294688014 4026912876647635137->1774065407316675932 -2454152959536373024 chip.bam2ta_ctl -8497073133794778895 TAG-ALIGN -2454152959536373024->-8497073133794778895 -8497073133794778895->5487040356938207280 6996038619502412478 Filt/deduped BAM 6996038619502412478->-2454152959536373024 6996038619502412478->1774065407316675932 -1432638828403290337 chip.bam2ta_ctl 6043079152837207275 TAG-ALIGN -1432638828403290337->6043079152837207275 6043079152837207275->5487040356938207280 3339669644542565806 Filt/deduped BAM 3339669644542565806->-1432638828403290337 3339669644542565806->1774065407316675932 150601087043359684 chip.bam2ta_ctl -5228855785329726241 TAG-ALIGN 150601087043359684->-5228855785329726241 -5228855785329726241->5487040356938207280 -4044905607384708498 Filt/deduped BAM -4044905607384708498->150601087043359684 -4044905607384708498->1774065407316675932 1639986387922226235 chip.bam2ta_ctl 5874809865241575603 TAG-ALIGN 1639986387922226235->5874809865241575603 5874809865241575603->5487040356938207280 7308382463024851616 Filt/deduped BAM 7308382463024851616->1639986387922226235 7308382463024851616->1774065407316675932 -8232584732555594283 chip.bam2ta_ctl 2998669151380568721 TAG-ALIGN -8232584732555594283->2998669151380568721 2998669151380568721->5487040356938207280 -8564698109896970745 Filt/deduped BAM -8564698109896970745->-8232584732555594283 -8564698109896970745->1774065407316675932 -2519425675213503314 chip.bam2ta_ctl 5435140560719069616 TAG-ALIGN -2519425675213503314->5435140560719069616 5435140560719069616->5487040356938207280 -6272144365717732842 Filt/deduped BAM -6272144365717732842->-2519425675213503314 -6272144365717732842->1774065407316675932 6525282517722233846 chip.bam2ta_ctl 5326789038756720119 TAG-ALIGN 6525282517722233846->5326789038756720119 5326789038756720119->5487040356938207280 7488344969235543616 Filt/deduped BAM 7488344969235543616->6525282517722233846 7488344969235543616->1774065407316675932 -8722044128087735982 chip.bam2ta_ctl -7387978712383955634 TAG-ALIGN -8722044128087735982->-7387978712383955634 -7387978712383955634->5487040356938207280 -6763864885440259966 Filt/deduped BAM -6763864885440259966->-8722044128087735982 -6763864885440259966->1774065407316675932 4900866360670007339 chip.bam2ta_ctl 1539202843092925030 TAG-ALIGN 4900866360670007339->1539202843092925030 1539202843092925030->5487040356938207280 2572887307340059152 Filt/deduped BAM 2572887307340059152->4900866360670007339 2572887307340059152->1774065407316675932 -7452311896514214228 chip.bam2ta_ctl -7960902244818418773 TAG-ALIGN -7452311896514214228->-7960902244818418773 -7960902244818418773->5487040356938207280 671940910507934157 Filt/deduped BAM 671940910507934157->-7452311896514214228 671940910507934157->1774065407316675932 -8145202033183487701 chip.bam2ta_ctl 8477496100979457515 TAG-ALIGN -8145202033183487701->8477496100979457515 8477496100979457515->5487040356938207280 -5841311673269327163 Filt/deduped BAM -5841311673269327163->-8145202033183487701 -5841311673269327163->1774065407316675932 -1419151365415639504 chip.bam2ta_ctl 2655568168886555334 TAG-ALIGN -1419151365415639504->2655568168886555334 2655568168886555334->5487040356938207280 -8856928581245616620 Filt/deduped BAM -8856928581245616620->-1419151365415639504 -8856928581245616620->1774065407316675932 6948743068352371563 chip.bam2ta_ctl 5988950261468729118 TAG-ALIGN 6948743068352371563->5988950261468729118 5988950261468729118->5487040356938207280 -6515923736026510036 Filt/deduped BAM -6515923736026510036->6948743068352371563 -6515923736026510036->1774065407316675932 -874592431051933998 chip.bam2ta_ctl 2127650257893764650 TAG-ALIGN -874592431051933998->2127650257893764650 2127650257893764650->5487040356938207280 -8773338224447177020 Filt/deduped BAM -8773338224447177020->-874592431051933998 -8773338224447177020->1774065407316675932 -7976698268689150017 chip.bam2ta_ctl 3992260953309406269 TAG-ALIGN -7976698268689150017->3992260953309406269 3992260953309406269->5487040356938207280 6238118220451030067 Filt/deduped BAM 6238118220451030067->-7976698268689150017 6238118220451030067->1774065407316675932 6803815946793238232 chip.bam2ta_ctl 2979023403209305377 TAG-ALIGN 6803815946793238232->2979023403209305377 2979023403209305377->5487040356938207280 8101057150690021697 Filt/deduped BAM 8101057150690021697->6803815946793238232 8101057150690021697->1774065407316675932 -3987880637762338038 chip.bam2ta_ctl -1439090671652905241 TAG-ALIGN -3987880637762338038->-1439090671652905241 -1439090671652905241->5487040356938207280 -2506816336890310658 Filt/deduped BAM -2506816336890310658->-3987880637762338038 -2506816336890310658->1774065407316675932 -8870724035637242566 IDR Plot ppr 6510361099840164649->-8870724035637242566 -8212212201209447711 IDR Peak ppr 6510361099840164649->-8212212201209447711 -8212212201209447711->-8745689328319187957 -8231183762224000205 IDR Plot rep1_vs_rep2 5418588420630758573->-8231183762224000205 -4497195042125660427 IDR NPeak rep1_vs_rep2 5418588420630758573->-4497195042125660427 -4497195042125660427->-8745689328319187957 9035089997739527955 Overlap Peak rep1_vs_rep2 -8238418410802450136->9035089997739527955 9035089997739527955->-2210422244945697537 279197966496558449 Overlap Peak optimal -2210422244945697537->279197966496558449 3921652250274951277 Overlap reproducibility -2210422244945697537->3921652250274951277 -3990568774678432747 IDR Peak optimal -8745689328319187957->-3990568774678432747 4494344413496619172 IDR reproducibility -8745689328319187957->4494344413496619172 3065243654457882570 Overlap Peak ppr -8693389198017880792->3065243654457882570 3065243654457882570->-2210422244945697537 4825477241740045245 JSD Plot 1774065407316675932->4825477241740045245

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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