File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF299RKG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF299RKG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF299RKG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF299RKG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF299RKG.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF680BLN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF680BLN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF680BLN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF680BLN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF680BLN.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.536M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.536M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.536M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.536M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF299RKG.crop_101-2bp.nodup.pr1_x_ctl.pooled.232M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF299RKG.crop_101-2bp.nodup.pr1_x_ctl.pooled.232M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF299RKG.crop_101-2bp.nodup.pr1_x_ctl.pooled.232M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF299RKG.crop_101-2bp.nodup.pr1_x_ctl.pooled.232M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF299RKG.crop_101-2bp.nodup.pr2_x_ctl.pooled.232M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF299RKG.crop_101-2bp.nodup.pr2_x_ctl.pooled.232M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF299RKG.crop_101-2bp.nodup.pr2_x_ctl.pooled.232M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF299RKG.crop_101-2bp.nodup.pr2_x_ctl.pooled.232M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF680BLN.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF680BLN.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF680BLN.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF680BLN.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF680BLN.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF680BLN.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF680BLN.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF680BLN.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.536M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.536M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.536M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF299RKG.crop_101-2bp.nodup.pr1_x_ctl.pooled.232M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF299RKG.crop_101-2bp.nodup.pr2_x_ctl.pooled.232M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF299RKG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF299RKG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF299RKG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF299RKG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF299RKG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF299RKG.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF680BLN.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF680BLN.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF680BLN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF680BLN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF680BLN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF680BLN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF680BLN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF680BLN.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF299RKG.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.536M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.536M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF299RKG.crop_101-2bp.nodup_x_ctl.pooled.232M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/41e3364e-4951-46c6-b10b-afbd42bd2968/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF680BLN.crop_101-2bp.nodup_x_ctl.pooled.303M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 8243895744352512063 chip.macs2_signal_track_pooled 7188978461150631584 BW FC 8243895744352512063->7188978461150631584 5697119556245490039 BW p-val 8243895744352512063->5697119556245490039 1769915374204905396 chip.call_peak_pooled 5233017985416945772 Peak (bfilt) 1769915374204905396->5233017985416945772 5763096558573537697 Peak 1769915374204905396->5763096558573537697 7673504710106134235 chip.idr_ppr 5763096558573537697->7673504710106134235 -3197413606095604658 chip.idr 5763096558573537697->-3197413606095604658 5072202611925552290 chip.overlap 5763096558573537697->5072202611925552290 -6096424400835827827 chip.overlap_ppr 5763096558573537697->-6096424400835827827 -7337069181149669552 chip.pool_ta 1412850317279423332 TAG-ALIGN -7337069181149669552->1412850317279423332 1412850317279423332->8243895744352512063 1412850317279423332->1769915374204905396 1412850317279423332->7673504710106134235 1412850317279423332->-3197413606095604658 1412850317279423332->5072202611925552290 1412850317279423332->-6096424400835827827 -3594259036037328912 chip.call_peak -4023614478785847668 Peak (bfilt) -3594259036037328912->-4023614478785847668 1405804078497153059 Peak -3594259036037328912->1405804078497153059 1405804078497153059->-3197413606095604658 1405804078497153059->5072202611925552290 1650365511752211728 chip.reproducibility_overlap 1405804078497153059->1650365511752211728 4810739772666532772 chip.reproducibility_idr 1405804078497153059->4810739772666532772 -315827711564553149 chip.bam2ta 3882707626286903235 TAG-ALIGN -315827711564553149->3882707626286903235 3882707626286903235->-7337069181149669552 3882707626286903235->-3594259036037328912 5652593478014017910 chip.macs2_signal_track 3882707626286903235->5652593478014017910 3882707626286903235->7673504710106134235 3882707626286903235->1650365511752211728 3882707626286903235->4810739772666532772 3882707626286903235->-6096424400835827827 6283119201606366669 chip.filter -8278685552110991048 SAMstats QC 6283119201606366669->-8278685552110991048 -1566485119675686062 Filt/deduped BAM 6283119201606366669->-1566485119675686062 -7797362484892008310 LibCmplx QC 6283119201606366669->-7797362484892008310 -1566485119675686062->-315827711564553149 -8067640331949663725 chip.jsd -1566485119675686062->-8067640331949663725 6349857721436734800 chip.align 7348772354083572835 SAMstats QC 6349857721436734800->7348772354083572835 9201317252494571091 BAM 6349857721436734800->9201317252494571091 9201317252494571091->6283119201606366669 -2168114526326018856 chip.xcor 2940644691707634025 XCOR Plot -2168114526326018856->2940644691707634025 -7416505338060106753 BW FC 5652593478014017910->-7416505338060106753 1915205661181118778 BW p-val 5652593478014017910->1915205661181118778 -9207193653443025896 FASTQ R1 (1) -9207193653443025896->6349857721436734800 -9207193653443025896->-2168114526326018856 4711237434449737649 FASTQ R2 (1) 4711237434449737649->6349857721436734800 4711024031178675352 chip.call_peak 7981264381900897791 Peak (bfilt) 4711024031178675352->7981264381900897791 -7576267144754061635 Peak 4711024031178675352->-7576267144754061635 -7576267144754061635->-3197413606095604658 -7576267144754061635->5072202611925552290 -7576267144754061635->1650365511752211728 -7576267144754061635->4810739772666532772 8962142770787193085 chip.bam2ta 2642412737439482877 TAG-ALIGN 8962142770787193085->2642412737439482877 2642412737439482877->-7337069181149669552 2642412737439482877->4711024031178675352 -5336489625871823662 chip.macs2_signal_track 2642412737439482877->-5336489625871823662 2642412737439482877->7673504710106134235 2642412737439482877->1650365511752211728 2642412737439482877->4810739772666532772 2642412737439482877->-6096424400835827827 3278940169554226435 chip.filter 8587779689270922899 SAMstats QC 3278940169554226435->8587779689270922899 -6546447104228732047 Filt/deduped BAM 3278940169554226435->-6546447104228732047 75066726071837123 LibCmplx QC 3278940169554226435->75066726071837123 -6546447104228732047->8962142770787193085 -6546447104228732047->-8067640331949663725 4749353221318893592 chip.align -5937195980786721037 SAMstats QC 4749353221318893592->-5937195980786721037 3776795859939396234 BAM 4749353221318893592->3776795859939396234 3776795859939396234->3278940169554226435 4856846772325898691 chip.xcor 1348424309990062893 XCOR Plot 4856846772325898691->1348424309990062893 -8595704589992234669 BW FC -5336489625871823662->-8595704589992234669 8772279073780661752 BW p-val -5336489625871823662->8772279073780661752 2773514614670051221 FASTQ R1 (1) 2773514614670051221->4749353221318893592 2773514614670051221->4856846772325898691 1189687759117426912 FASTQ R2 (1) 1189687759117426912->4749353221318893592 -8602737136451795764 chip.pool_ta_ctl -7449668337402339391 TAG-ALIGN -8602737136451795764->-7449668337402339391 -7449668337402339391->8243895744352512063 -7449668337402339391->1769915374204905396 -7449668337402339391->-3594259036037328912 -7449668337402339391->5652593478014017910 -7449668337402339391->4711024031178675352 -7449668337402339391->-5336489625871823662 -7449668337402339391->7673504710106134235 -7449668337402339391->1650365511752211728 -7449668337402339391->4810739772666532772 -7449668337402339391->-6096424400835827827 -3164746791482717404 chip.bam2ta_ctl -5410344995933743212 TAG-ALIGN -3164746791482717404->-5410344995933743212 -5410344995933743212->-8602737136451795764 -7667825902522660687 Filt/deduped BAM -7667825902522660687->-3164746791482717404 -7667825902522660687->-8067640331949663725 -7178349867948318909 chip.bam2ta_ctl -6911522531215333657 TAG-ALIGN -7178349867948318909->-6911522531215333657 -6911522531215333657->-8602737136451795764 5051928943706454140 Filt/deduped BAM 5051928943706454140->-7178349867948318909 5051928943706454140->-8067640331949663725 -3944392775815779780 chip.bam2ta_ctl -6022204410215719846 TAG-ALIGN -3944392775815779780->-6022204410215719846 -6022204410215719846->-8602737136451795764 3298780781295371049 Filt/deduped BAM 3298780781295371049->-3944392775815779780 3298780781295371049->-8067640331949663725 -7199443982503829697 chip.bam2ta_ctl -3607758272937477041 TAG-ALIGN -7199443982503829697->-3607758272937477041 -3607758272937477041->-8602737136451795764 5078686097922615882 Filt/deduped BAM 5078686097922615882->-7199443982503829697 5078686097922615882->-8067640331949663725 -915551682850309746 chip.bam2ta_ctl -6078568465946388932 TAG-ALIGN -915551682850309746->-6078568465946388932 -6078568465946388932->-8602737136451795764 -6328071041430172709 Filt/deduped BAM -6328071041430172709->-915551682850309746 -6328071041430172709->-8067640331949663725 3675537696712757038 chip.bam2ta_ctl 7003146703693270787 TAG-ALIGN 3675537696712757038->7003146703693270787 7003146703693270787->-8602737136451795764 4011110121598760849 Filt/deduped BAM 4011110121598760849->3675537696712757038 4011110121598760849->-8067640331949663725 3695213221739868076 chip.bam2ta_ctl -547224492281941272 TAG-ALIGN 3695213221739868076->-547224492281941272 -547224492281941272->-8602737136451795764 -7403224608460407281 Filt/deduped BAM -7403224608460407281->3695213221739868076 -7403224608460407281->-8067640331949663725 5710826710341607762 chip.bam2ta_ctl 7923589372440412391 TAG-ALIGN 5710826710341607762->7923589372440412391 7923589372440412391->-8602737136451795764 938337463731187015 Filt/deduped BAM 938337463731187015->5710826710341607762 938337463731187015->-8067640331949663725 3459972487581967982 chip.bam2ta_ctl -4910621400243431856 TAG-ALIGN 3459972487581967982->-4910621400243431856 -4910621400243431856->-8602737136451795764 8529727573285478651 Filt/deduped BAM 8529727573285478651->3459972487581967982 8529727573285478651->-8067640331949663725 3547351024351088791 chip.bam2ta_ctl 9111954675830457360 TAG-ALIGN 3547351024351088791->9111954675830457360 9111954675830457360->-8602737136451795764 2778771124461350873 Filt/deduped BAM 2778771124461350873->3547351024351088791 2778771124461350873->-8067640331949663725 -7325152315500780045 chip.bam2ta_ctl 4990450349168805290 TAG-ALIGN -7325152315500780045->4990450349168805290 4990450349168805290->-8602737136451795764 -92096351442928426 Filt/deduped BAM -92096351442928426->-7325152315500780045 -92096351442928426->-8067640331949663725 5327860187541007031 chip.bam2ta_ctl -114597119418202969 TAG-ALIGN 5327860187541007031->-114597119418202969 -114597119418202969->-8602737136451795764 -2038918878357569598 Filt/deduped BAM -2038918878357569598->5327860187541007031 -2038918878357569598->-8067640331949663725 -8911844617865285199 chip.bam2ta_ctl -299540694519751461 TAG-ALIGN -8911844617865285199->-299540694519751461 -299540694519751461->-8602737136451795764 -5083772590601191375 Filt/deduped BAM -5083772590601191375->-8911844617865285199 -5083772590601191375->-8067640331949663725 1456817219714134432 chip.bam2ta_ctl -8851827875355461794 TAG-ALIGN 1456817219714134432->-8851827875355461794 -8851827875355461794->-8602737136451795764 9130564913630833376 Filt/deduped BAM 9130564913630833376->1456817219714134432 9130564913630833376->-8067640331949663725 -2220054301445199924 chip.bam2ta_ctl 5796973319967099701 TAG-ALIGN -2220054301445199924->5796973319967099701 5796973319967099701->-8602737136451795764 -8763346748093313128 Filt/deduped BAM -8763346748093313128->-2220054301445199924 -8763346748093313128->-8067640331949663725 1061239075033997224 chip.bam2ta_ctl -2844627651231254649 TAG-ALIGN 1061239075033997224->-2844627651231254649 -2844627651231254649->-8602737136451795764 -7208352972198837063 Filt/deduped BAM -7208352972198837063->1061239075033997224 -7208352972198837063->-8067640331949663725 -5661344790333552022 chip.bam2ta_ctl -5233946245449280438 TAG-ALIGN -5661344790333552022->-5233946245449280438 -5233946245449280438->-8602737136451795764 -9012137084839557803 Filt/deduped BAM -9012137084839557803->-5661344790333552022 -9012137084839557803->-8067640331949663725 718164794980565191 chip.bam2ta_ctl -8623287599995310943 TAG-ALIGN 718164794980565191->-8623287599995310943 -8623287599995310943->-8602737136451795764 -1324731196516631470 Filt/deduped BAM -1324731196516631470->718164794980565191 -1324731196516631470->-8067640331949663725 -8526911737555404920 chip.bam2ta_ctl 9090711765821158362 TAG-ALIGN -8526911737555404920->9090711765821158362 9090711765821158362->-8602737136451795764 999792688727208293 Filt/deduped BAM 999792688727208293->-8526911737555404920 999792688727208293->-8067640331949663725 -8070921461672695117 chip.bam2ta_ctl -3456406218502178380 TAG-ALIGN -8070921461672695117->-3456406218502178380 -3456406218502178380->-8602737136451795764 3843683773775683439 Filt/deduped BAM 3843683773775683439->-8070921461672695117 3843683773775683439->-8067640331949663725 2767783676945613136 chip.bam2ta_ctl -1397783974405999665 TAG-ALIGN 2767783676945613136->-1397783974405999665 -1397783974405999665->-8602737136451795764 -2359898142387392096 Filt/deduped BAM -2359898142387392096->2767783676945613136 -2359898142387392096->-8067640331949663725 7237711437209518434 chip.bam2ta_ctl 554300211223505668 TAG-ALIGN 7237711437209518434->554300211223505668 554300211223505668->-8602737136451795764 -2127478004695663788 Filt/deduped BAM -2127478004695663788->7237711437209518434 -2127478004695663788->-8067640331949663725 -2696747127302094358 chip.bam2ta_ctl -6804180185910323367 TAG-ALIGN -2696747127302094358->-6804180185910323367 -6804180185910323367->-8602737136451795764 4890527737218136210 Filt/deduped BAM 4890527737218136210->-2696747127302094358 4890527737218136210->-8067640331949663725 6156631682928508775 chip.bam2ta_ctl -5457294661988651170 TAG-ALIGN 6156631682928508775->-5457294661988651170 -5457294661988651170->-8602737136451795764 -8185038016722171739 Filt/deduped BAM -8185038016722171739->6156631682928508775 -8185038016722171739->-8067640331949663725 5463627995045777897 IDR Plot ppr 7673504710106134235->5463627995045777897 128012280280821041 IDR Peak ppr 7673504710106134235->128012280280821041 128012280280821041->4810739772666532772 -7450788477336323277 IDR Plot rep1_vs_rep2 -3197413606095604658->-7450788477336323277 6646688586557386955 IDR NPeak rep1_vs_rep2 -3197413606095604658->6646688586557386955 6646688586557386955->4810739772666532772 6130785910704327978 Overlap Peak rep1_vs_rep2 5072202611925552290->6130785910704327978 6130785910704327978->1650365511752211728 -7458126858273853591 Overlap Peak optimal 1650365511752211728->-7458126858273853591 -6419473756107419456 Overlap reproducibility 1650365511752211728->-6419473756107419456 5736509196897403005 IDR Peak optimal 4810739772666532772->5736509196897403005 5269714139599426399 IDR reproducibility 4810739772666532772->5269714139599426399 6096240842099522662 Overlap Peak ppr -6096424400835827827->6096240842099522662 6096240842099522662->1650365511752211728 5458435185066854283 JSD Plot -8067640331949663725->5458435185066854283

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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