File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF436WRK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF436WRK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF436WRK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF436WRK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF436WRK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF176QOJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF176QOJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF176QOJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF176QOJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF176QOJ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.415M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.415M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.415M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.415M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF436WRK.crop_101-2bp.nodup.pr1_x_ctl.pooled.217M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF436WRK.crop_101-2bp.nodup.pr1_x_ctl.pooled.217M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF436WRK.crop_101-2bp.nodup.pr1_x_ctl.pooled.217M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF436WRK.crop_101-2bp.nodup.pr1_x_ctl.pooled.217M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF436WRK.crop_101-2bp.nodup.pr2_x_ctl.pooled.217M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF436WRK.crop_101-2bp.nodup.pr2_x_ctl.pooled.217M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF436WRK.crop_101-2bp.nodup.pr2_x_ctl.pooled.217M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF436WRK.crop_101-2bp.nodup.pr2_x_ctl.pooled.217M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF176QOJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF176QOJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF176QOJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF176QOJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF176QOJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF176QOJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF176QOJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF176QOJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.415M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.415M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.415M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF436WRK.crop_101-2bp.nodup.pr1_x_ctl.pooled.217M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF436WRK.crop_101-2bp.nodup.pr2_x_ctl.pooled.217M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF436WRK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF436WRK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF436WRK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF436WRK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF436WRK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF436WRK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176QOJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176QOJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF176QOJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF176QOJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF176QOJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF176QOJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF176QOJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF176QOJ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/efe80703-1961-4f62-8d70-0cb3de40d61d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/efe80703-1961-4f62-8d70-0cb3de40d61d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/efe80703-1961-4f62-8d70-0cb3de40d61d/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF436WRK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/638db20f-c179-484a-8732-32d1febd91cf/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.415M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.415M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF436WRK.crop_101-2bp.nodup_x_ctl.pooled.217M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/fd0c7b77-46db-4811-b981-8938b9b93c97/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF176QOJ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2721682231621600186 chip.macs2_signal_track_pooled -497527297679690393 BW FC -2721682231621600186->-497527297679690393 -803613296158868467 BW p-val -2721682231621600186->-803613296158868467 -987547031068223332 chip.call_peak_pooled -6648318779809008146 Peak (bfilt) -987547031068223332->-6648318779809008146 -4596836335108739909 Peak -987547031068223332->-4596836335108739909 -5732049642243430513 chip.idr_ppr -4596836335108739909->-5732049642243430513 -7992312923565387697 chip.idr -4596836335108739909->-7992312923565387697 -5873002873540217251 chip.overlap -4596836335108739909->-5873002873540217251 2658605540260565227 chip.overlap_ppr -4596836335108739909->2658605540260565227 -4176830447869617584 chip.pool_ta -2363841941665369721 TAG-ALIGN -4176830447869617584->-2363841941665369721 -2363841941665369721->-2721682231621600186 -2363841941665369721->-987547031068223332 -2363841941665369721->-5732049642243430513 -2363841941665369721->-7992312923565387697 -2363841941665369721->-5873002873540217251 -2363841941665369721->2658605540260565227 -3271705065709828582 chip.call_peak -5769656591061647730 Peak (bfilt) -3271705065709828582->-5769656591061647730 -1995865964694734734 Peak -3271705065709828582->-1995865964694734734 -1995865964694734734->-7992312923565387697 -1995865964694734734->-5873002873540217251 -4090638534426349172 chip.reproducibility_overlap -1995865964694734734->-4090638534426349172 -4702867239774777833 chip.reproducibility_idr -1995865964694734734->-4702867239774777833 -1645016041198160116 chip.bam2ta 6250810537792373514 TAG-ALIGN -1645016041198160116->6250810537792373514 6250810537792373514->-4176830447869617584 6250810537792373514->-3271705065709828582 -6701768937363261246 chip.macs2_signal_track 6250810537792373514->-6701768937363261246 6250810537792373514->-5732049642243430513 6250810537792373514->-4090638534426349172 6250810537792373514->-4702867239774777833 6250810537792373514->2658605540260565227 598880709237571351 chip.filter -2121156229405255245 SAMstats QC 598880709237571351->-2121156229405255245 792857159028338348 Filt/deduped BAM 598880709237571351->792857159028338348 5934848229216680835 LibCmplx QC 598880709237571351->5934848229216680835 792857159028338348->-1645016041198160116 91759848873202609 chip.jsd 792857159028338348->91759848873202609 7166446205565982955 chip.jsd 792857159028338348->7166446205565982955 2555730254688867586 chip.align -1278744959921039970 SAMstats QC 2555730254688867586->-1278744959921039970 -5855228798965221812 BAM 2555730254688867586->-5855228798965221812 -5855228798965221812->598880709237571351 -7822963286591606421 chip.xcor -1619861322478007400 XCOR Plot -7822963286591606421->-1619861322478007400 7555560957351125456 BW FC -6701768937363261246->7555560957351125456 -118887384913320493 BW p-val -6701768937363261246->-118887384913320493 6770738457213295654 FASTQ R1 (1) 6770738457213295654->2555730254688867586 6770738457213295654->-7822963286591606421 -2536847701445689177 FASTQ R2 (1) -2536847701445689177->2555730254688867586 -2070011856328071180 chip.call_peak 6952742292403518908 Peak (bfilt) -2070011856328071180->6952742292403518908 290275768466967724 Peak -2070011856328071180->290275768466967724 290275768466967724->-7992312923565387697 290275768466967724->-5873002873540217251 290275768466967724->-4090638534426349172 290275768466967724->-4702867239774777833 3291382682683943584 chip.bam2ta -3134741194553311213 TAG-ALIGN 3291382682683943584->-3134741194553311213 -3134741194553311213->-4176830447869617584 -3134741194553311213->-2070011856328071180 -352031809234099465 chip.macs2_signal_track -3134741194553311213->-352031809234099465 -3134741194553311213->-5732049642243430513 -3134741194553311213->-4090638534426349172 -3134741194553311213->-4702867239774777833 -3134741194553311213->2658605540260565227 19805446572204198 chip.filter 8305625297573396450 SAMstats QC 19805446572204198->8305625297573396450 -3454809590144159996 Filt/deduped BAM 19805446572204198->-3454809590144159996 -6509965689315931073 LibCmplx QC 19805446572204198->-6509965689315931073 -3454809590144159996->3291382682683943584 -3454809590144159996->91759848873202609 -3454809590144159996->7166446205565982955 -7409399885101067670 chip.align -8497782054413066354 SAMstats QC -7409399885101067670->-8497782054413066354 8629876331784172264 BAM -7409399885101067670->8629876331784172264 8629876331784172264->19805446572204198 6406522917232657385 chip.xcor -5519185459810881149 XCOR Plot 6406522917232657385->-5519185459810881149 5056432614703642030 BW FC -352031809234099465->5056432614703642030 -5616668429551862603 BW p-val -352031809234099465->-5616668429551862603 -1913804043701866726 FASTQ R1 (1) -1913804043701866726->-7409399885101067670 -1913804043701866726->6406522917232657385 -8464862850851140993 FASTQ R2 (1) -8464862850851140993->-7409399885101067670 7259675241173408714 chip.pool_ta_ctl 6461306235545027736 TAG-ALIGN 7259675241173408714->6461306235545027736 6461306235545027736->-2721682231621600186 6461306235545027736->-987547031068223332 6461306235545027736->-3271705065709828582 6461306235545027736->-6701768937363261246 6461306235545027736->-2070011856328071180 6461306235545027736->-352031809234099465 6461306235545027736->-5732049642243430513 6461306235545027736->-4090638534426349172 6461306235545027736->-4702867239774777833 6461306235545027736->2658605540260565227 5997394878441215216 chip.bam2ta_ctl -1079347814891562262 TAG-ALIGN 5997394878441215216->-1079347814891562262 -1079347814891562262->7259675241173408714 2523249185392046821 Filt/deduped BAM 2523249185392046821->5997394878441215216 2523249185392046821->91759848873202609 2523249185392046821->7166446205565982955 5122135985207513999 chip.bam2ta_ctl 1037208861375721865 TAG-ALIGN 5122135985207513999->1037208861375721865 1037208861375721865->7259675241173408714 -5336424668567849976 Filt/deduped BAM -5336424668567849976->5122135985207513999 -5336424668567849976->91759848873202609 -5336424668567849976->7166446205565982955 -4447882122469769810 chip.bam2ta_ctl 8770639465608896770 TAG-ALIGN -4447882122469769810->8770639465608896770 8770639465608896770->7259675241173408714 -4101057447494050863 Filt/deduped BAM -4101057447494050863->-4447882122469769810 -4101057447494050863->91759848873202609 -4101057447494050863->7166446205565982955 -2780759644990151072 chip.bam2ta_ctl -2489619478019716140 TAG-ALIGN -2780759644990151072->-2489619478019716140 -2489619478019716140->7259675241173408714 -5106266784624177286 Filt/deduped BAM -5106266784624177286->-2780759644990151072 -5106266784624177286->91759848873202609 -5106266784624177286->7166446205565982955 1934991174114515643 chip.bam2ta_ctl -5627671961698776072 TAG-ALIGN 1934991174114515643->-5627671961698776072 -5627671961698776072->7259675241173408714 7465384382919443172 Filt/deduped BAM 7465384382919443172->1934991174114515643 7465384382919443172->91759848873202609 7465384382919443172->7166446205565982955 4098792238850594447 chip.bam2ta_ctl -2784821010724819482 TAG-ALIGN 4098792238850594447->-2784821010724819482 -2784821010724819482->7259675241173408714 -440610716861515763 Filt/deduped BAM -440610716861515763->4098792238850594447 -440610716861515763->91759848873202609 -440610716861515763->7166446205565982955 -3643015205034269243 chip.bam2ta_ctl -8376630506871794810 TAG-ALIGN -3643015205034269243->-8376630506871794810 -8376630506871794810->7259675241173408714 -6699671425343476738 Filt/deduped BAM -6699671425343476738->-3643015205034269243 -6699671425343476738->91759848873202609 -6699671425343476738->7166446205565982955 -4896487735438111677 chip.bam2ta_ctl -2125228404298312742 TAG-ALIGN -4896487735438111677->-2125228404298312742 -2125228404298312742->7259675241173408714 -7911994242069436349 Filt/deduped BAM -7911994242069436349->-4896487735438111677 -7911994242069436349->91759848873202609 -7911994242069436349->7166446205565982955 -5242448008149246410 chip.bam2ta_ctl 5310972449311698440 TAG-ALIGN -5242448008149246410->5310972449311698440 5310972449311698440->7259675241173408714 -5460093333630963811 Filt/deduped BAM -5460093333630963811->-5242448008149246410 -5460093333630963811->91759848873202609 -5460093333630963811->7166446205565982955 -7459257381087557290 chip.bam2ta_ctl 7543277261480377143 TAG-ALIGN -7459257381087557290->7543277261480377143 7543277261480377143->7259675241173408714 -1026547306033380985 Filt/deduped BAM -1026547306033380985->-7459257381087557290 -1026547306033380985->91759848873202609 -1026547306033380985->7166446205565982955 -6461976966511526554 chip.bam2ta_ctl 4697696065437494690 TAG-ALIGN -6461976966511526554->4697696065437494690 4697696065437494690->7259675241173408714 -8200740436745519983 Filt/deduped BAM -8200740436745519983->-6461976966511526554 -8200740436745519983->91759848873202609 -8200740436745519983->7166446205565982955 -1495115853120119536 chip.bam2ta_ctl 5606043780035787970 TAG-ALIGN -1495115853120119536->5606043780035787970 5606043780035787970->7259675241173408714 7089581295363661392 Filt/deduped BAM 7089581295363661392->-1495115853120119536 7089581295363661392->91759848873202609 7089581295363661392->7166446205565982955 6808096638605446137 chip.bam2ta_ctl 4914743441688295437 TAG-ALIGN 6808096638605446137->4914743441688295437 4914743441688295437->7259675241173408714 2272884756681346273 Filt/deduped BAM 2272884756681346273->6808096638605446137 2272884756681346273->91759848873202609 2272884756681346273->7166446205565982955 2783422046838855618 chip.bam2ta_ctl -8606430312137536354 TAG-ALIGN 2783422046838855618->-8606430312137536354 -8606430312137536354->7259675241173408714 5466120250239376824 Filt/deduped BAM 5466120250239376824->2783422046838855618 5466120250239376824->91759848873202609 5466120250239376824->7166446205565982955 2462603419808601566 chip.bam2ta_ctl 764369056565245217 TAG-ALIGN 2462603419808601566->764369056565245217 764369056565245217->7259675241173408714 6646446280982352764 Filt/deduped BAM 6646446280982352764->2462603419808601566 6646446280982352764->91759848873202609 6646446280982352764->7166446205565982955 -8519324420801789358 chip.bam2ta_ctl -2795614645653212959 TAG-ALIGN -8519324420801789358->-2795614645653212959 -2795614645653212959->7259675241173408714 2018221787272960239 Filt/deduped BAM 2018221787272960239->-8519324420801789358 2018221787272960239->91759848873202609 2018221787272960239->7166446205565982955 8084222942769422163 chip.bam2ta_ctl 2230254715133342679 TAG-ALIGN 8084222942769422163->2230254715133342679 2230254715133342679->7259675241173408714 8309424674995495277 Filt/deduped BAM 8309424674995495277->8084222942769422163 8309424674995495277->91759848873202609 8309424674995495277->7166446205565982955 -2889010312644671028 chip.bam2ta_ctl 1626373821857733254 TAG-ALIGN -2889010312644671028->1626373821857733254 1626373821857733254->7259675241173408714 -7068523260604865286 Filt/deduped BAM -7068523260604865286->-2889010312644671028 -7068523260604865286->91759848873202609 -7068523260604865286->7166446205565982955 -4615506600003310992 chip.bam2ta_ctl -342572232447657486 TAG-ALIGN -4615506600003310992->-342572232447657486 -342572232447657486->7259675241173408714 1495174661306517411 Filt/deduped BAM 1495174661306517411->-4615506600003310992 1495174661306517411->91759848873202609 1495174661306517411->7166446205565982955 1380530193342973974 chip.bam2ta_ctl -3919555755780445825 TAG-ALIGN 1380530193342973974->-3919555755780445825 -3919555755780445825->7259675241173408714 -674740442863630567 Filt/deduped BAM -674740442863630567->1380530193342973974 -674740442863630567->91759848873202609 -674740442863630567->7166446205565982955 -3286365560092597855 chip.bam2ta_ctl 5600856838943512798 TAG-ALIGN -3286365560092597855->5600856838943512798 5600856838943512798->7259675241173408714 6136847180811251096 Filt/deduped BAM 6136847180811251096->-3286365560092597855 6136847180811251096->91759848873202609 6136847180811251096->7166446205565982955 9187720178711323401 chip.bam2ta_ctl 8577367063508801776 TAG-ALIGN 9187720178711323401->8577367063508801776 8577367063508801776->7259675241173408714 -7193522409719244115 Filt/deduped BAM -7193522409719244115->9187720178711323401 -7193522409719244115->91759848873202609 -7193522409719244115->7166446205565982955 4455117301746249477 chip.bam2ta_ctl 4896690896933861041 TAG-ALIGN 4455117301746249477->4896690896933861041 4896690896933861041->7259675241173408714 5223216692676267255 Filt/deduped BAM 5223216692676267255->4455117301746249477 5223216692676267255->91759848873202609 5223216692676267255->7166446205565982955 496462722138530014 chip.bam2ta_ctl 2413068577796804508 TAG-ALIGN 496462722138530014->2413068577796804508 2413068577796804508->7259675241173408714 1673295849418582928 Filt/deduped BAM 1673295849418582928->496462722138530014 1673295849418582928->91759848873202609 1673295849418582928->7166446205565982955 1663594078962807014 IDR Plot ppr -5732049642243430513->1663594078962807014 6529087556304325355 IDR Peak ppr -5732049642243430513->6529087556304325355 6529087556304325355->-4702867239774777833 -863264546308192795 IDR Plot rep1_vs_rep2 -7992312923565387697->-863264546308192795 2941498068757002442 IDR NPeak rep1_vs_rep2 -7992312923565387697->2941498068757002442 2941498068757002442->-4702867239774777833 4373217195805999740 Overlap Peak rep1_vs_rep2 -5873002873540217251->4373217195805999740 4373217195805999740->-4090638534426349172 5059157144238131712 Overlap Peak optimal -4090638534426349172->5059157144238131712 7039030922807482162 Overlap reproducibility -4090638534426349172->7039030922807482162 -4340282899564285452 IDR Peak optimal -4702867239774777833->-4340282899564285452 3594209022521944743 IDR reproducibility -4702867239774777833->3594209022521944743 7266715349499963441 Overlap Peak ppr 2658605540260565227->7266715349499963441 7266715349499963441->-4090638534426349172 -9055795718909033305 JSD Plot 91759848873202609->-9055795718909033305 7166446205565982955->-9055795718909033305

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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