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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF685PQB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF685PQB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF685PQB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF685PQB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF685PQB.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF629DEC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF629DEC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF629DEC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF629DEC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF629DEC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.471M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.471M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.471M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.471M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF685PQB.crop_101-2bp.nodup.pr1_x_ctl.pooled.336M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF685PQB.crop_101-2bp.nodup.pr1_x_ctl.pooled.336M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF685PQB.crop_101-2bp.nodup.pr1_x_ctl.pooled.336M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF685PQB.crop_101-2bp.nodup.pr1_x_ctl.pooled.336M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF685PQB.crop_101-2bp.nodup.pr2_x_ctl.pooled.336M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF685PQB.crop_101-2bp.nodup.pr2_x_ctl.pooled.336M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF685PQB.crop_101-2bp.nodup.pr2_x_ctl.pooled.336M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF685PQB.crop_101-2bp.nodup.pr2_x_ctl.pooled.336M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF629DEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF629DEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF629DEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF629DEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF629DEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF629DEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF629DEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF629DEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.471M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.471M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.471M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF685PQB.crop_101-2bp.nodup.pr1_x_ctl.pooled.336M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF685PQB.crop_101-2bp.nodup.pr2_x_ctl.pooled.336M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF685PQB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF685PQB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF685PQB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF685PQB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF685PQB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF685PQB.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF629DEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF629DEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF629DEC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF629DEC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF629DEC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF629DEC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF629DEC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF629DEC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF685PQB.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.471M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.471M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF685PQB.crop_101-2bp.nodup_x_ctl.pooled.336M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb2243be-ecc1-4dea-a23c-463d26a68890/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF629DEC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5824243122809854156 chip.macs2_signal_track_pooled 5646072178534409287 BW FC 5824243122809854156->5646072178534409287 -178573855171489270 BW p-val 5824243122809854156->-178573855171489270 4556983906551407968 chip.call_peak_pooled 8912088802056926303 Peak (bfilt) 4556983906551407968->8912088802056926303 553768481500967457 Peak 4556983906551407968->553768481500967457 4453927821924789351 chip.idr_ppr 553768481500967457->4453927821924789351 3054186953078823978 chip.idr 553768481500967457->3054186953078823978 2480102368864424112 chip.overlap 553768481500967457->2480102368864424112 8115294269183973638 chip.overlap_ppr 553768481500967457->8115294269183973638 -2616605847323134707 chip.pool_ta -8465723928900525471 TAG-ALIGN -2616605847323134707->-8465723928900525471 -8465723928900525471->5824243122809854156 -8465723928900525471->4556983906551407968 -8465723928900525471->4453927821924789351 -8465723928900525471->3054186953078823978 -8465723928900525471->2480102368864424112 -8465723928900525471->8115294269183973638 8248346302816138879 chip.call_peak 3448342877954228788 Peak (bfilt) 8248346302816138879->3448342877954228788 -6481564416630414271 Peak 8248346302816138879->-6481564416630414271 -6481564416630414271->3054186953078823978 -6481564416630414271->2480102368864424112 247895543287673252 chip.reproducibility_overlap -6481564416630414271->247895543287673252 2782723900075037997 chip.reproducibility_idr -6481564416630414271->2782723900075037997 2402348986993582827 chip.bam2ta 1387739611007959205 TAG-ALIGN 2402348986993582827->1387739611007959205 1387739611007959205->-2616605847323134707 1387739611007959205->8248346302816138879 8586769674274612669 chip.macs2_signal_track 1387739611007959205->8586769674274612669 1387739611007959205->4453927821924789351 1387739611007959205->247895543287673252 1387739611007959205->2782723900075037997 1387739611007959205->8115294269183973638 7112554099757821332 chip.filter 4423594548501980653 SAMstats QC 7112554099757821332->4423594548501980653 -285457707478906030 Filt/deduped BAM 7112554099757821332->-285457707478906030 -11653689682135198 LibCmplx QC 7112554099757821332->-11653689682135198 -285457707478906030->2402348986993582827 922919100543928867 chip.jsd -285457707478906030->922919100543928867 9179501856588846093 chip.align 685085608115342061 SAMstats QC 9179501856588846093->685085608115342061 -5381228155992849048 BAM 9179501856588846093->-5381228155992849048 -5381228155992849048->7112554099757821332 -7188290619496577960 chip.xcor -2037020529713183171 XCOR Plot -7188290619496577960->-2037020529713183171 -5893864223166610797 BW FC 8586769674274612669->-5893864223166610797 -6280789393067673155 BW p-val 8586769674274612669->-6280789393067673155 -4776091578395177569 FASTQ R1 (1) -4776091578395177569->9179501856588846093 -4776091578395177569->-7188290619496577960 -4036277196021383711 FASTQ R2 (1) -4036277196021383711->9179501856588846093 1714152263705813824 chip.call_peak 943386624454913294 Peak (bfilt) 1714152263705813824->943386624454913294 -8220571021946300381 Peak 1714152263705813824->-8220571021946300381 -8220571021946300381->3054186953078823978 -8220571021946300381->2480102368864424112 -8220571021946300381->247895543287673252 -8220571021946300381->2782723900075037997 -2020011092414664113 chip.bam2ta 5939689497839680207 TAG-ALIGN -2020011092414664113->5939689497839680207 5939689497839680207->-2616605847323134707 5939689497839680207->1714152263705813824 5483675651742158987 chip.macs2_signal_track 5939689497839680207->5483675651742158987 5939689497839680207->4453927821924789351 5939689497839680207->247895543287673252 5939689497839680207->2782723900075037997 5939689497839680207->8115294269183973638 -5169222306534996032 chip.filter -5436415001679721694 SAMstats QC -5169222306534996032->-5436415001679721694 750696455058522887 Filt/deduped BAM -5169222306534996032->750696455058522887 6462045542441948074 LibCmplx QC -5169222306534996032->6462045542441948074 750696455058522887->-2020011092414664113 750696455058522887->922919100543928867 -1595846653596956641 chip.align -8474108803072445220 SAMstats QC -1595846653596956641->-8474108803072445220 8422823286344006148 BAM -1595846653596956641->8422823286344006148 8422823286344006148->-5169222306534996032 -7658443112623636150 chip.xcor -9145339022170246512 XCOR Plot -7658443112623636150->-9145339022170246512 4609108603204094467 BW FC 5483675651742158987->4609108603204094467 7154314304663068783 BW p-val 5483675651742158987->7154314304663068783 1358503756872665754 FASTQ R1 (1) 1358503756872665754->-1595846653596956641 1358503756872665754->-7658443112623636150 4086170823481446244 FASTQ R2 (1) 4086170823481446244->-1595846653596956641 638332388933692642 chip.pool_ta_ctl -5657959701315234015 TAG-ALIGN 638332388933692642->-5657959701315234015 -5657959701315234015->5824243122809854156 -5657959701315234015->4556983906551407968 -5657959701315234015->8248346302816138879 -5657959701315234015->8586769674274612669 -5657959701315234015->1714152263705813824 -5657959701315234015->5483675651742158987 -5657959701315234015->4453927821924789351 -5657959701315234015->247895543287673252 -5657959701315234015->2782723900075037997 -5657959701315234015->8115294269183973638 -7351961749402009530 chip.bam2ta_ctl 7731898365099078095 TAG-ALIGN -7351961749402009530->7731898365099078095 7731898365099078095->638332388933692642 5873804221805649871 Filt/deduped BAM 5873804221805649871->-7351961749402009530 5873804221805649871->922919100543928867 -943553241085599722 chip.bam2ta_ctl -6982376768811917818 TAG-ALIGN -943553241085599722->-6982376768811917818 -6982376768811917818->638332388933692642 4122137872569221287 Filt/deduped BAM 4122137872569221287->-943553241085599722 4122137872569221287->922919100543928867 6347445683087564710 chip.bam2ta_ctl -4423442897407366990 TAG-ALIGN 6347445683087564710->-4423442897407366990 -4423442897407366990->638332388933692642 -2171640980471465002 Filt/deduped BAM -2171640980471465002->6347445683087564710 -2171640980471465002->922919100543928867 -8950976695323814014 chip.bam2ta_ctl -5766149252210495379 TAG-ALIGN -8950976695323814014->-5766149252210495379 -5766149252210495379->638332388933692642 5685376044350048452 Filt/deduped BAM 5685376044350048452->-8950976695323814014 5685376044350048452->922919100543928867 -6236644470163723063 chip.bam2ta_ctl 8172320915439414670 TAG-ALIGN -6236644470163723063->8172320915439414670 8172320915439414670->638332388933692642 3807936731096833383 Filt/deduped BAM 3807936731096833383->-6236644470163723063 3807936731096833383->922919100543928867 -8506400660434593410 chip.bam2ta_ctl -6783168421738670647 TAG-ALIGN -8506400660434593410->-6783168421738670647 -6783168421738670647->638332388933692642 411563726846083582 Filt/deduped BAM 411563726846083582->-8506400660434593410 411563726846083582->922919100543928867 9108101422531226368 chip.bam2ta_ctl 868462302270718887 TAG-ALIGN 9108101422531226368->868462302270718887 868462302270718887->638332388933692642 8273039672726720587 Filt/deduped BAM 8273039672726720587->9108101422531226368 8273039672726720587->922919100543928867 315961276649527547 chip.bam2ta_ctl 817139818852484914 TAG-ALIGN 315961276649527547->817139818852484914 817139818852484914->638332388933692642 5338559544205295512 Filt/deduped BAM 5338559544205295512->315961276649527547 5338559544205295512->922919100543928867 -4184192345354668164 chip.bam2ta_ctl -4235102009101989004 TAG-ALIGN -4184192345354668164->-4235102009101989004 -4235102009101989004->638332388933692642 8421779260661895216 Filt/deduped BAM 8421779260661895216->-4184192345354668164 8421779260661895216->922919100543928867 4671427879432150053 chip.bam2ta_ctl -4487666074895892932 TAG-ALIGN 4671427879432150053->-4487666074895892932 -4487666074895892932->638332388933692642 -4986672202794886238 Filt/deduped BAM -4986672202794886238->4671427879432150053 -4986672202794886238->922919100543928867 -5418343028895018593 chip.bam2ta_ctl -2215242563264808657 TAG-ALIGN -5418343028895018593->-2215242563264808657 -2215242563264808657->638332388933692642 -6095237382137881172 Filt/deduped BAM -6095237382137881172->-5418343028895018593 -6095237382137881172->922919100543928867 7807830508706589751 chip.bam2ta_ctl 3849306204870748593 TAG-ALIGN 7807830508706589751->3849306204870748593 3849306204870748593->638332388933692642 6384464155758838293 Filt/deduped BAM 6384464155758838293->7807830508706589751 6384464155758838293->922919100543928867 2793715443026626387 chip.bam2ta_ctl -7877999983564688470 TAG-ALIGN 2793715443026626387->-7877999983564688470 -7877999983564688470->638332388933692642 8923513116251279545 Filt/deduped BAM 8923513116251279545->2793715443026626387 8923513116251279545->922919100543928867 2909556310664462357 chip.bam2ta_ctl -6004442778099374402 TAG-ALIGN 2909556310664462357->-6004442778099374402 -6004442778099374402->638332388933692642 8384129079475533808 Filt/deduped BAM 8384129079475533808->2909556310664462357 8384129079475533808->922919100543928867 2500519317113222671 chip.bam2ta_ctl -4322130641313044146 TAG-ALIGN 2500519317113222671->-4322130641313044146 -4322130641313044146->638332388933692642 4323102117613076275 Filt/deduped BAM 4323102117613076275->2500519317113222671 4323102117613076275->922919100543928867 -163294452796836253 chip.bam2ta_ctl 5838508219588784604 TAG-ALIGN -163294452796836253->5838508219588784604 5838508219588784604->638332388933692642 -8603094717117386742 Filt/deduped BAM -8603094717117386742->-163294452796836253 -8603094717117386742->922919100543928867 -8867679891976909904 chip.bam2ta_ctl 6529191215502849390 TAG-ALIGN -8867679891976909904->6529191215502849390 6529191215502849390->638332388933692642 5963027322927340994 Filt/deduped BAM 5963027322927340994->-8867679891976909904 5963027322927340994->922919100543928867 -472718924904525917 chip.bam2ta_ctl 163430866560292754 TAG-ALIGN -472718924904525917->163430866560292754 163430866560292754->638332388933692642 6829039004132729946 Filt/deduped BAM 6829039004132729946->-472718924904525917 6829039004132729946->922919100543928867 2481425321448083629 chip.bam2ta_ctl -3194822521361116580 TAG-ALIGN 2481425321448083629->-3194822521361116580 -3194822521361116580->638332388933692642 -3285253280867650449 Filt/deduped BAM -3285253280867650449->2481425321448083629 -3285253280867650449->922919100543928867 -7044385672579608538 chip.bam2ta_ctl 6456899629959375251 TAG-ALIGN -7044385672579608538->6456899629959375251 6456899629959375251->638332388933692642 1682258013866560682 Filt/deduped BAM 1682258013866560682->-7044385672579608538 1682258013866560682->922919100543928867 6648807530645149245 chip.bam2ta_ctl 5203586848151525049 TAG-ALIGN 6648807530645149245->5203586848151525049 5203586848151525049->638332388933692642 -5786898117459035054 Filt/deduped BAM -5786898117459035054->6648807530645149245 -5786898117459035054->922919100543928867 -8680510200840471928 chip.bam2ta_ctl -1123870267798236490 TAG-ALIGN -8680510200840471928->-1123870267798236490 -1123870267798236490->638332388933692642 7438258448344522937 Filt/deduped BAM 7438258448344522937->-8680510200840471928 7438258448344522937->922919100543928867 2605499388801792670 chip.bam2ta_ctl 3158606560363587121 TAG-ALIGN 2605499388801792670->3158606560363587121 3158606560363587121->638332388933692642 -5148921394281093593 Filt/deduped BAM -5148921394281093593->2605499388801792670 -5148921394281093593->922919100543928867 796554688980772982 chip.bam2ta_ctl -494248932709948002 TAG-ALIGN 796554688980772982->-494248932709948002 -494248932709948002->638332388933692642 6815279137422247193 Filt/deduped BAM 6815279137422247193->796554688980772982 6815279137422247193->922919100543928867 7079320885581708256 IDR Plot ppr 4453927821924789351->7079320885581708256 -61829422553061634 IDR Peak ppr 4453927821924789351->-61829422553061634 -61829422553061634->2782723900075037997 -4576589945526521675 IDR Plot rep1_vs_rep2 3054186953078823978->-4576589945526521675 -4404322282373426845 IDR NPeak rep1_vs_rep2 3054186953078823978->-4404322282373426845 -4404322282373426845->2782723900075037997 8080986536992009549 Overlap Peak rep1_vs_rep2 2480102368864424112->8080986536992009549 8080986536992009549->247895543287673252 6665998389138521123 Overlap Peak optimal 247895543287673252->6665998389138521123 -6093761202207517974 Overlap reproducibility 247895543287673252->-6093761202207517974 -8544374579210712043 IDR Peak optimal 2782723900075037997->-8544374579210712043 462617873492801194 IDR reproducibility 2782723900075037997->462617873492801194 -2921126022468524560 Overlap Peak ppr 8115294269183973638->-2921126022468524560 -2921126022468524560->247895543287673252 2771214679586903088 JSD Plot 922919100543928867->2771214679586903088

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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