File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF146VSJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF146VSJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF146VSJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF146VSJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF146VSJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF253QUP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF253QUP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF253QUP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF253QUP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF253QUP.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.454M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.454M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.454M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF146VSJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF146VSJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF146VSJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF146VSJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF146VSJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF146VSJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF146VSJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF146VSJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF253QUP.crop_101-2bp.nodup.pr1_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF253QUP.crop_101-2bp.nodup.pr1_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF253QUP.crop_101-2bp.nodup.pr1_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF253QUP.crop_101-2bp.nodup.pr1_x_ctl.pooled.238M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF253QUP.crop_101-2bp.nodup.pr2_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF253QUP.crop_101-2bp.nodup.pr2_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF253QUP.crop_101-2bp.nodup.pr2_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF253QUP.crop_101-2bp.nodup.pr2_x_ctl.pooled.238M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.454M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF146VSJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF146VSJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF146VSJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF146VSJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF146VSJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF146VSJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF146VSJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF146VSJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF253QUP.crop_101-2bp.nodup.pr1_x_ctl.pooled.238M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF253QUP.crop_101-2bp.nodup.pr2_x_ctl.pooled.238M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF253QUP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF253QUP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF253QUP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF253QUP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF253QUP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF253QUP.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/1c4132d2-15fa-4436-af2b-7aa15a0140bb/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF146VSJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e37277f6-9ea9-49c5-99f8-ee7c44f8ae0d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.454M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.454M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF146VSJ.crop_101-2bp.nodup_x_ctl.pooled.215M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/1889239c-58e3-44f4-b3ff-6f02bfca4d4b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF253QUP.crop_101-2bp.nodup_x_ctl.pooled.238M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1834444067329313397 chip.macs2_signal_track_pooled -5660601779778153278 BW FC -1834444067329313397->-5660601779778153278 5099294222077439715 BW p-val -1834444067329313397->5099294222077439715 7998068992857524972 chip.call_peak_pooled 3517117336230386336 Peak (bfilt) 7998068992857524972->3517117336230386336 9140521431744292744 Peak 7998068992857524972->9140521431744292744 7462439992927250245 chip.idr_ppr 9140521431744292744->7462439992927250245 4038486453020687127 chip.idr 9140521431744292744->4038486453020687127 6463763777966582589 chip.overlap 9140521431744292744->6463763777966582589 8142297459696912336 chip.overlap_ppr 9140521431744292744->8142297459696912336 -4979872218649113682 chip.pool_ta -8771315613549612862 TAG-ALIGN -4979872218649113682->-8771315613549612862 -8771315613549612862->-1834444067329313397 -8771315613549612862->7998068992857524972 -8771315613549612862->7462439992927250245 -8771315613549612862->4038486453020687127 -8771315613549612862->6463763777966582589 -8771315613549612862->8142297459696912336 6751953180364853787 chip.call_peak 995953959325756475 Peak (bfilt) 6751953180364853787->995953959325756475 5929165319296092694 Peak 6751953180364853787->5929165319296092694 5929165319296092694->4038486453020687127 5929165319296092694->6463763777966582589 -7878850831115252665 chip.reproducibility_overlap 5929165319296092694->-7878850831115252665 2545726006298098907 chip.reproducibility_idr 5929165319296092694->2545726006298098907 2213580402503891742 chip.bam2ta 8377900866530833086 TAG-ALIGN 2213580402503891742->8377900866530833086 8377900866530833086->-4979872218649113682 8377900866530833086->6751953180364853787 7026536718396868106 chip.macs2_signal_track 8377900866530833086->7026536718396868106 8377900866530833086->7462439992927250245 8377900866530833086->-7878850831115252665 8377900866530833086->2545726006298098907 8377900866530833086->8142297459696912336 -8083392367137363801 chip.filter -7954553125587700264 SAMstats QC -8083392367137363801->-7954553125587700264 -5295619482996390162 Filt/deduped BAM -8083392367137363801->-5295619482996390162 897645556896957699 LibCmplx QC -8083392367137363801->897645556896957699 -5295619482996390162->2213580402503891742 -454696271215583889 chip.jsd -5295619482996390162->-454696271215583889 -6323459585287262375 chip.align 2595994610183647131 SAMstats QC -6323459585287262375->2595994610183647131 5872627733822503788 BAM -6323459585287262375->5872627733822503788 5872627733822503788->-8083392367137363801 -5242091785718049693 chip.xcor -310805555690212821 XCOR Plot -5242091785718049693->-310805555690212821 2414793144910387965 BW FC 7026536718396868106->2414793144910387965 -1608369450598017283 BW p-val 7026536718396868106->-1608369450598017283 -9200304959986785347 FASTQ R1 (1) -9200304959986785347->-6323459585287262375 -9200304959986785347->-5242091785718049693 7054086227011814341 FASTQ R2 (1) 7054086227011814341->-6323459585287262375 -8508208295592027986 chip.call_peak -8878683472125245523 Peak (bfilt) -8508208295592027986->-8878683472125245523 697156635539130263 Peak -8508208295592027986->697156635539130263 697156635539130263->4038486453020687127 697156635539130263->6463763777966582589 697156635539130263->-7878850831115252665 697156635539130263->2545726006298098907 5249628474638081637 chip.bam2ta 3632190233364357834 TAG-ALIGN 5249628474638081637->3632190233364357834 3632190233364357834->-4979872218649113682 3632190233364357834->-8508208295592027986 -7348769892749431472 chip.macs2_signal_track 3632190233364357834->-7348769892749431472 3632190233364357834->7462439992927250245 3632190233364357834->-7878850831115252665 3632190233364357834->2545726006298098907 3632190233364357834->8142297459696912336 8282259964468062392 chip.filter 2838771060619883074 SAMstats QC 8282259964468062392->2838771060619883074 -5740383173201416786 Filt/deduped BAM 8282259964468062392->-5740383173201416786 3703971072057622526 LibCmplx QC 8282259964468062392->3703971072057622526 -5740383173201416786->5249628474638081637 -5740383173201416786->-454696271215583889 -4486616569820453258 chip.align 1350996634934276825 SAMstats QC -4486616569820453258->1350996634934276825 -3535836464620191528 BAM -4486616569820453258->-3535836464620191528 -3535836464620191528->8282259964468062392 -6329672241243063243 chip.xcor -8122085923170945113 XCOR Plot -6329672241243063243->-8122085923170945113 1518889768106062538 BW FC -7348769892749431472->1518889768106062538 -7769128634239043707 BW p-val -7348769892749431472->-7769128634239043707 -4609124901292951112 FASTQ R1 (1) -4609124901292951112->-4486616569820453258 -4609124901292951112->-6329672241243063243 1179205047635147379 FASTQ R2 (1) 1179205047635147379->-4486616569820453258 2032637845613783535 chip.pool_ta_ctl -2586562181924493764 TAG-ALIGN 2032637845613783535->-2586562181924493764 -2586562181924493764->-1834444067329313397 -2586562181924493764->7998068992857524972 -2586562181924493764->6751953180364853787 -2586562181924493764->7026536718396868106 -2586562181924493764->-8508208295592027986 -2586562181924493764->-7348769892749431472 -2586562181924493764->7462439992927250245 -2586562181924493764->-7878850831115252665 -2586562181924493764->2545726006298098907 -2586562181924493764->8142297459696912336 5236097780006640374 chip.bam2ta_ctl 5362250366705477481 TAG-ALIGN 5236097780006640374->5362250366705477481 5362250366705477481->2032637845613783535 -1320395743429516099 Filt/deduped BAM -1320395743429516099->5236097780006640374 -1320395743429516099->-454696271215583889 -8794147202322039018 chip.bam2ta_ctl 6737151847421844146 TAG-ALIGN -8794147202322039018->6737151847421844146 6737151847421844146->2032637845613783535 5518615270872157307 Filt/deduped BAM 5518615270872157307->-8794147202322039018 5518615270872157307->-454696271215583889 8747754438231122244 chip.bam2ta_ctl -9057463166205973390 TAG-ALIGN 8747754438231122244->-9057463166205973390 -9057463166205973390->2032637845613783535 177798461547925644 Filt/deduped BAM 177798461547925644->8747754438231122244 177798461547925644->-454696271215583889 4740901208363866452 chip.bam2ta_ctl 8669142262778817387 TAG-ALIGN 4740901208363866452->8669142262778817387 8669142262778817387->2032637845613783535 3708519982729745444 Filt/deduped BAM 3708519982729745444->4740901208363866452 3708519982729745444->-454696271215583889 1562245911623817269 chip.bam2ta_ctl 3764469516507303445 TAG-ALIGN 1562245911623817269->3764469516507303445 3764469516507303445->2032637845613783535 947986736039122162 Filt/deduped BAM 947986736039122162->1562245911623817269 947986736039122162->-454696271215583889 4024622248964586052 chip.bam2ta_ctl -2246881113895308669 TAG-ALIGN 4024622248964586052->-2246881113895308669 -2246881113895308669->2032637845613783535 -8405583256439605654 Filt/deduped BAM -8405583256439605654->4024622248964586052 -8405583256439605654->-454696271215583889 -3623876274396469513 chip.bam2ta_ctl 2135283378298069318 TAG-ALIGN -3623876274396469513->2135283378298069318 2135283378298069318->2032637845613783535 9109080913782366211 Filt/deduped BAM 9109080913782366211->-3623876274396469513 9109080913782366211->-454696271215583889 -6611055956192326924 chip.bam2ta_ctl -8053181350929147180 TAG-ALIGN -6611055956192326924->-8053181350929147180 -8053181350929147180->2032637845613783535 6090335768697662097 Filt/deduped BAM 6090335768697662097->-6611055956192326924 6090335768697662097->-454696271215583889 7676227768310751490 chip.bam2ta_ctl -1202530594886869364 TAG-ALIGN 7676227768310751490->-1202530594886869364 -1202530594886869364->2032637845613783535 783883851766675754 Filt/deduped BAM 783883851766675754->7676227768310751490 783883851766675754->-454696271215583889 -869552350831513202 chip.bam2ta_ctl 5100818157286430452 TAG-ALIGN -869552350831513202->5100818157286430452 5100818157286430452->2032637845613783535 -9025031884099957835 Filt/deduped BAM -9025031884099957835->-869552350831513202 -9025031884099957835->-454696271215583889 -1646400278021420964 chip.bam2ta_ctl 5799729699487385638 TAG-ALIGN -1646400278021420964->5799729699487385638 5799729699487385638->2032637845613783535 6558156034689157120 Filt/deduped BAM 6558156034689157120->-1646400278021420964 6558156034689157120->-454696271215583889 139402466084757603 chip.bam2ta_ctl -1438793804026612794 TAG-ALIGN 139402466084757603->-1438793804026612794 -1438793804026612794->2032637845613783535 -6169072469204272324 Filt/deduped BAM -6169072469204272324->139402466084757603 -6169072469204272324->-454696271215583889 -1439516060248558703 chip.bam2ta_ctl 1028650268630997060 TAG-ALIGN -1439516060248558703->1028650268630997060 1028650268630997060->2032637845613783535 9076598572656955513 Filt/deduped BAM 9076598572656955513->-1439516060248558703 9076598572656955513->-454696271215583889 3787362369217842266 chip.bam2ta_ctl -3708577480573180186 TAG-ALIGN 3787362369217842266->-3708577480573180186 -3708577480573180186->2032637845613783535 8482198811790710655 Filt/deduped BAM 8482198811790710655->3787362369217842266 8482198811790710655->-454696271215583889 6768682329530835697 chip.bam2ta_ctl 1965696263805294172 TAG-ALIGN 6768682329530835697->1965696263805294172 1965696263805294172->2032637845613783535 6843991849713085095 Filt/deduped BAM 6843991849713085095->6768682329530835697 6843991849713085095->-454696271215583889 6556712563241596814 chip.bam2ta_ctl 3914098399064137232 TAG-ALIGN 6556712563241596814->3914098399064137232 3914098399064137232->2032637845613783535 4609938814927207139 Filt/deduped BAM 4609938814927207139->6556712563241596814 4609938814927207139->-454696271215583889 -2342712976230707380 chip.bam2ta_ctl 7879019898289076113 TAG-ALIGN -2342712976230707380->7879019898289076113 7879019898289076113->2032637845613783535 -8990273189601451293 Filt/deduped BAM -8990273189601451293->-2342712976230707380 -8990273189601451293->-454696271215583889 -3228591975864229131 chip.bam2ta_ctl -6171256517530753197 TAG-ALIGN -3228591975864229131->-6171256517530753197 -6171256517530753197->2032637845613783535 6757003361735245367 Filt/deduped BAM 6757003361735245367->-3228591975864229131 6757003361735245367->-454696271215583889 289889901087302853 chip.bam2ta_ctl 7077577534483179733 TAG-ALIGN 289889901087302853->7077577534483179733 7077577534483179733->2032637845613783535 -866583085414008428 Filt/deduped BAM -866583085414008428->289889901087302853 -866583085414008428->-454696271215583889 7773660249631526102 chip.bam2ta_ctl 7273419049729254482 TAG-ALIGN 7773660249631526102->7273419049729254482 7273419049729254482->2032637845613783535 -1826747181967156011 Filt/deduped BAM -1826747181967156011->7773660249631526102 -1826747181967156011->-454696271215583889 4934244088910808876 chip.bam2ta_ctl -527788260503569668 TAG-ALIGN 4934244088910808876->-527788260503569668 -527788260503569668->2032637845613783535 -9035170809473924880 Filt/deduped BAM -9035170809473924880->4934244088910808876 -9035170809473924880->-454696271215583889 -8768652615849591161 chip.bam2ta_ctl -953105449940863078 TAG-ALIGN -8768652615849591161->-953105449940863078 -953105449940863078->2032637845613783535 -2895525540511482614 Filt/deduped BAM -2895525540511482614->-8768652615849591161 -2895525540511482614->-454696271215583889 2922185816519444689 chip.bam2ta_ctl -7435374648099361528 TAG-ALIGN 2922185816519444689->-7435374648099361528 -7435374648099361528->2032637845613783535 7606320208412016659 Filt/deduped BAM 7606320208412016659->2922185816519444689 7606320208412016659->-454696271215583889 7028443308937423099 chip.bam2ta_ctl 4651338090059606524 TAG-ALIGN 7028443308937423099->4651338090059606524 4651338090059606524->2032637845613783535 4714135842188269822 Filt/deduped BAM 4714135842188269822->7028443308937423099 4714135842188269822->-454696271215583889 5339227951471099468 IDR Plot ppr 7462439992927250245->5339227951471099468 4801501389513623323 IDR Peak ppr 7462439992927250245->4801501389513623323 4801501389513623323->2545726006298098907 1603647645415448401 IDR Plot rep1_vs_rep2 4038486453020687127->1603647645415448401 -1291001541389043120 IDR NPeak rep1_vs_rep2 4038486453020687127->-1291001541389043120 -1291001541389043120->2545726006298098907 8900398006047457013 Overlap Peak rep1_vs_rep2 6463763777966582589->8900398006047457013 8900398006047457013->-7878850831115252665 2313024829664618089 Overlap Peak optimal -7878850831115252665->2313024829664618089 7691587495605775344 Overlap reproducibility -7878850831115252665->7691587495605775344 -8783830973705210967 IDR Peak optimal 2545726006298098907->-8783830973705210967 4622210390263324355 IDR reproducibility 2545726006298098907->4622210390263324355 -361637622342703693 Overlap Peak ppr 8142297459696912336->-361637622342703693 -361637622342703693->-7878850831115252665 4940709344867603831 JSD Plot -454696271215583889->4940709344867603831

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