File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF405NIJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF405NIJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF405NIJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF405NIJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF405NIJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF949JWR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF949JWR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF949JWR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF949JWR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949JWR.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.564M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.564M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.564M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF405NIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF405NIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF405NIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF405NIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.290M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF405NIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF405NIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF405NIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF405NIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.290M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF949JWR.crop_101-2bp.nodup.pr1_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF949JWR.crop_101-2bp.nodup.pr1_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF949JWR.crop_101-2bp.nodup.pr1_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF949JWR.crop_101-2bp.nodup.pr1_x_ctl.pooled.274M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF949JWR.crop_101-2bp.nodup.pr2_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF949JWR.crop_101-2bp.nodup.pr2_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF949JWR.crop_101-2bp.nodup.pr2_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF949JWR.crop_101-2bp.nodup.pr2_x_ctl.pooled.274M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.564M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF405NIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.290M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF405NIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.290M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF405NIJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF405NIJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF405NIJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF405NIJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF405NIJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF405NIJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF949JWR.crop_101-2bp.nodup.pr1_x_ctl.pooled.274M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF949JWR.crop_101-2bp.nodup.pr2_x_ctl.pooled.274M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF949JWR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF949JWR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF949JWR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF949JWR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF949JWR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF949JWR.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/4d1580e9-0267-4ecd-b18b-c8c3c190a134/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF405NIJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/40885e8f-9dde-4edb-bf81-bb4e13aacd50/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.564M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.564M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF405NIJ.crop_101-2bp.nodup_x_ctl.pooled.290M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d8829ceb-1ccd-4c79-9795-fe86cf21eddd/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF949JWR.crop_101-2bp.nodup_x_ctl.pooled.274M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3803767154793743812 chip.macs2_signal_track_pooled -1632819226039438682 BW FC 3803767154793743812->-1632819226039438682 6859794553878839193 BW p-val 3803767154793743812->6859794553878839193 3845490146308187005 chip.call_peak_pooled 3817384630166547909 Peak (bfilt) 3845490146308187005->3817384630166547909 -6671282723559354587 Peak 3845490146308187005->-6671282723559354587 -6752544771881250881 chip.idr_ppr -6671282723559354587->-6752544771881250881 6815415075251065013 chip.idr -6671282723559354587->6815415075251065013 7625917086923508492 chip.overlap -6671282723559354587->7625917086923508492 4242539447134831052 chip.overlap_ppr -6671282723559354587->4242539447134831052 -201773861569775751 chip.pool_ta 1121124997032681658 TAG-ALIGN -201773861569775751->1121124997032681658 1121124997032681658->3803767154793743812 1121124997032681658->3845490146308187005 1121124997032681658->-6752544771881250881 1121124997032681658->6815415075251065013 1121124997032681658->7625917086923508492 1121124997032681658->4242539447134831052 -9052390762732248376 chip.call_peak -3857902387746589077 Peak (bfilt) -9052390762732248376->-3857902387746589077 8355360707018082851 Peak -9052390762732248376->8355360707018082851 8355360707018082851->6815415075251065013 8355360707018082851->7625917086923508492 -5654690526582925842 chip.reproducibility_overlap 8355360707018082851->-5654690526582925842 9058309728238163966 chip.reproducibility_idr 8355360707018082851->9058309728238163966 5637820451195556611 chip.bam2ta 4302156080703381950 TAG-ALIGN 5637820451195556611->4302156080703381950 4302156080703381950->-201773861569775751 4302156080703381950->-9052390762732248376 5504529880349870092 chip.macs2_signal_track 4302156080703381950->5504529880349870092 4302156080703381950->-6752544771881250881 4302156080703381950->-5654690526582925842 4302156080703381950->9058309728238163966 4302156080703381950->4242539447134831052 8875892904534850217 chip.filter -1695654293083572548 SAMstats QC 8875892904534850217->-1695654293083572548 -8144325043298612909 Filt/deduped BAM 8875892904534850217->-8144325043298612909 -3822810701591463495 LibCmplx QC 8875892904534850217->-3822810701591463495 -8144325043298612909->5637820451195556611 5519396246897295799 chip.jsd -8144325043298612909->5519396246897295799 -3522123801763888962 chip.align 9139375636247761460 SAMstats QC -3522123801763888962->9139375636247761460 4218100338542933478 BAM -3522123801763888962->4218100338542933478 4218100338542933478->8875892904534850217 5924914913492534264 chip.xcor -7736468741132814541 XCOR Plot 5924914913492534264->-7736468741132814541 4415740752322269533 BW FC 5504529880349870092->4415740752322269533 -9196505072075028743 BW p-val 5504529880349870092->-9196505072075028743 1113175139599566002 FASTQ R1 (1) 1113175139599566002->-3522123801763888962 1113175139599566002->5924914913492534264 770750477799433600 FASTQ R2 (1) 770750477799433600->-3522123801763888962 -7808395421469193662 chip.call_peak -2515927330512673896 Peak (bfilt) -7808395421469193662->-2515927330512673896 3201160554896714437 Peak -7808395421469193662->3201160554896714437 3201160554896714437->6815415075251065013 3201160554896714437->7625917086923508492 3201160554896714437->-5654690526582925842 3201160554896714437->9058309728238163966 -4321911709700232170 chip.bam2ta -2765130559587960482 TAG-ALIGN -4321911709700232170->-2765130559587960482 -2765130559587960482->-201773861569775751 -2765130559587960482->-7808395421469193662 4892766495644280460 chip.macs2_signal_track -2765130559587960482->4892766495644280460 -2765130559587960482->-6752544771881250881 -2765130559587960482->-5654690526582925842 -2765130559587960482->9058309728238163966 -2765130559587960482->4242539447134831052 7854605023248841561 chip.filter 4402181149453222375 SAMstats QC 7854605023248841561->4402181149453222375 8016161758969792813 Filt/deduped BAM 7854605023248841561->8016161758969792813 -3348143370807494701 LibCmplx QC 7854605023248841561->-3348143370807494701 8016161758969792813->-4321911709700232170 8016161758969792813->5519396246897295799 -260978431655336087 chip.align -1555497199927539204 SAMstats QC -260978431655336087->-1555497199927539204 2724007164352409556 BAM -260978431655336087->2724007164352409556 2724007164352409556->7854605023248841561 341465258771285775 chip.xcor -4356492981163672735 XCOR Plot 341465258771285775->-4356492981163672735 -4405900389784014498 BW FC 4892766495644280460->-4405900389784014498 -7760573455141408268 BW p-val 4892766495644280460->-7760573455141408268 6126999082305530821 FASTQ R1 (1) 6126999082305530821->-260978431655336087 6126999082305530821->341465258771285775 858014112759048353 FASTQ R2 (1) 858014112759048353->-260978431655336087 7002223309198273592 chip.pool_ta_ctl -1947737541667099673 TAG-ALIGN 7002223309198273592->-1947737541667099673 -1947737541667099673->3803767154793743812 -1947737541667099673->3845490146308187005 -1947737541667099673->-9052390762732248376 -1947737541667099673->5504529880349870092 -1947737541667099673->-7808395421469193662 -1947737541667099673->4892766495644280460 -1947737541667099673->-6752544771881250881 -1947737541667099673->-5654690526582925842 -1947737541667099673->9058309728238163966 -1947737541667099673->4242539447134831052 -5641946195328010239 chip.bam2ta_ctl -8207336128202038442 TAG-ALIGN -5641946195328010239->-8207336128202038442 -8207336128202038442->7002223309198273592 -5696476763458731613 Filt/deduped BAM -5696476763458731613->-5641946195328010239 -5696476763458731613->5519396246897295799 -2676359795535607019 chip.bam2ta_ctl -3547535663972987846 TAG-ALIGN -2676359795535607019->-3547535663972987846 -3547535663972987846->7002223309198273592 3447095245774120864 Filt/deduped BAM 3447095245774120864->-2676359795535607019 3447095245774120864->5519396246897295799 1429274231826839966 chip.bam2ta_ctl 2926745503879710028 TAG-ALIGN 1429274231826839966->2926745503879710028 2926745503879710028->7002223309198273592 403230935789820252 Filt/deduped BAM 403230935789820252->1429274231826839966 403230935789820252->5519396246897295799 -3475019840365984586 chip.bam2ta_ctl 2022602315560033523 TAG-ALIGN -3475019840365984586->2022602315560033523 2022602315560033523->7002223309198273592 7126164761990440246 Filt/deduped BAM 7126164761990440246->-3475019840365984586 7126164761990440246->5519396246897295799 6162236955827071568 chip.bam2ta_ctl -633063473745755389 TAG-ALIGN 6162236955827071568->-633063473745755389 -633063473745755389->7002223309198273592 -7541185533591865379 Filt/deduped BAM -7541185533591865379->6162236955827071568 -7541185533591865379->5519396246897295799 -2371400914620843868 chip.bam2ta_ctl 5817360724734417184 TAG-ALIGN -2371400914620843868->5817360724734417184 5817360724734417184->7002223309198273592 3346331068664272151 Filt/deduped BAM 3346331068664272151->-2371400914620843868 3346331068664272151->5519396246897295799 -2344880716717449750 chip.bam2ta_ctl -2751985376472907857 TAG-ALIGN -2344880716717449750->-2751985376472907857 -2751985376472907857->7002223309198273592 5475857794074835273 Filt/deduped BAM 5475857794074835273->-2344880716717449750 5475857794074835273->5519396246897295799 8062850083178911152 chip.bam2ta_ctl -8475278320877585889 TAG-ALIGN 8062850083178911152->-8475278320877585889 -8475278320877585889->7002223309198273592 7476864614546379424 Filt/deduped BAM 7476864614546379424->8062850083178911152 7476864614546379424->5519396246897295799 -7325628698318940725 chip.bam2ta_ctl -3199876580468884045 TAG-ALIGN -7325628698318940725->-3199876580468884045 -3199876580468884045->7002223309198273592 -2223553531178488550 Filt/deduped BAM -2223553531178488550->-7325628698318940725 -2223553531178488550->5519396246897295799 699151237900452303 chip.bam2ta_ctl 1209704517520907185 TAG-ALIGN 699151237900452303->1209704517520907185 1209704517520907185->7002223309198273592 -4486226328117739261 Filt/deduped BAM -4486226328117739261->699151237900452303 -4486226328117739261->5519396246897295799 799593304329844971 chip.bam2ta_ctl 8233114789721564467 TAG-ALIGN 799593304329844971->8233114789721564467 8233114789721564467->7002223309198273592 -7444920260202333000 Filt/deduped BAM -7444920260202333000->799593304329844971 -7444920260202333000->5519396246897295799 1294119600096161839 chip.bam2ta_ctl 3558529655879166445 TAG-ALIGN 1294119600096161839->3558529655879166445 3558529655879166445->7002223309198273592 -111355606045341511 Filt/deduped BAM -111355606045341511->1294119600096161839 -111355606045341511->5519396246897295799 8983879205687532919 chip.bam2ta_ctl 781884757895740347 TAG-ALIGN 8983879205687532919->781884757895740347 781884757895740347->7002223309198273592 -9026759940999981262 Filt/deduped BAM -9026759940999981262->8983879205687532919 -9026759940999981262->5519396246897295799 -2529068876773954977 chip.bam2ta_ctl 2066964503145321091 TAG-ALIGN -2529068876773954977->2066964503145321091 2066964503145321091->7002223309198273592 -6665708489626374671 Filt/deduped BAM -6665708489626374671->-2529068876773954977 -6665708489626374671->5519396246897295799 2532392723037420961 chip.bam2ta_ctl 1501263201454957196 TAG-ALIGN 2532392723037420961->1501263201454957196 1501263201454957196->7002223309198273592 5320273859255754207 Filt/deduped BAM 5320273859255754207->2532392723037420961 5320273859255754207->5519396246897295799 -5920575885932711984 chip.bam2ta_ctl 6106304387728495029 TAG-ALIGN -5920575885932711984->6106304387728495029 6106304387728495029->7002223309198273592 -396236794652533342 Filt/deduped BAM -396236794652533342->-5920575885932711984 -396236794652533342->5519396246897295799 7691065501347568162 chip.bam2ta_ctl 6223544039586147121 TAG-ALIGN 7691065501347568162->6223544039586147121 6223544039586147121->7002223309198273592 4427014887630164705 Filt/deduped BAM 4427014887630164705->7691065501347568162 4427014887630164705->5519396246897295799 5457095413631955638 chip.bam2ta_ctl -5756296938333050916 TAG-ALIGN 5457095413631955638->-5756296938333050916 -5756296938333050916->7002223309198273592 -6877806139992020863 Filt/deduped BAM -6877806139992020863->5457095413631955638 -6877806139992020863->5519396246897295799 767832960680354621 chip.bam2ta_ctl 2305378131815869834 TAG-ALIGN 767832960680354621->2305378131815869834 2305378131815869834->7002223309198273592 -6892863530745907171 Filt/deduped BAM -6892863530745907171->767832960680354621 -6892863530745907171->5519396246897295799 -8590848857160933221 chip.bam2ta_ctl -5317046497477107835 TAG-ALIGN -8590848857160933221->-5317046497477107835 -5317046497477107835->7002223309198273592 2826640262884960805 Filt/deduped BAM 2826640262884960805->-8590848857160933221 2826640262884960805->5519396246897295799 8829674406559671091 chip.bam2ta_ctl -2367159840701171614 TAG-ALIGN 8829674406559671091->-2367159840701171614 -2367159840701171614->7002223309198273592 -641674303973533599 Filt/deduped BAM -641674303973533599->8829674406559671091 -641674303973533599->5519396246897295799 1155492239845141670 chip.bam2ta_ctl -8533486572975747031 TAG-ALIGN 1155492239845141670->-8533486572975747031 -8533486572975747031->7002223309198273592 9033377692064880978 Filt/deduped BAM 9033377692064880978->1155492239845141670 9033377692064880978->5519396246897295799 3620076074501783367 chip.bam2ta_ctl 3953769435096483626 TAG-ALIGN 3620076074501783367->3953769435096483626 3953769435096483626->7002223309198273592 5633657606606416907 Filt/deduped BAM 5633657606606416907->3620076074501783367 5633657606606416907->5519396246897295799 -304828758051169902 chip.bam2ta_ctl -8709173108224854556 TAG-ALIGN -304828758051169902->-8709173108224854556 -8709173108224854556->7002223309198273592 -3221842732320086681 Filt/deduped BAM -3221842732320086681->-304828758051169902 -3221842732320086681->5519396246897295799 -3515931215559955024 IDR Plot ppr -6752544771881250881->-3515931215559955024 6324092880754897961 IDR Peak ppr -6752544771881250881->6324092880754897961 6324092880754897961->9058309728238163966 -8052091027103117850 IDR Plot rep1_vs_rep2 6815415075251065013->-8052091027103117850 6229208252838384905 IDR NPeak rep1_vs_rep2 6815415075251065013->6229208252838384905 6229208252838384905->9058309728238163966 -6987834168701097249 Overlap Peak rep1_vs_rep2 7625917086923508492->-6987834168701097249 -6987834168701097249->-5654690526582925842 4300359868127847321 Overlap Peak optimal -5654690526582925842->4300359868127847321 -2981945219773006117 Overlap reproducibility -5654690526582925842->-2981945219773006117 2118681662706960167 IDR Peak optimal 9058309728238163966->2118681662706960167 40757140830998368 IDR reproducibility 9058309728238163966->40757140830998368 -5180404953606590989 Overlap Peak ppr 4242539447134831052->-5180404953606590989 -5180404953606590989->-5654690526582925842 4912134118379490956 JSD Plot 5519396246897295799->4912134118379490956

UCSC browser tracks

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