File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF117CBN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF117CBN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF117CBN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF117CBN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF117CBN.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF321KTO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF321KTO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF321KTO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF321KTO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF321KTO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.215M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF117CBN.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF117CBN.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF117CBN.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF117CBN.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF117CBN.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF117CBN.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF117CBN.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF117CBN.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF321KTO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF321KTO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF321KTO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF321KTO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF321KTO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF321KTO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF321KTO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF321KTO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.215M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF117CBN.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF117CBN.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF117CBN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF117CBN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF117CBN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF117CBN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF117CBN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF117CBN.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF321KTO.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF321KTO.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF321KTO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF321KTO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF321KTO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF321KTO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF321KTO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF321KTO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF117CBN.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/a2bbcc7f-cb29-4597-a6cf-2aee09acf919/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.215M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.215M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF117CBN.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a9f6c3dc-ecfb-4a43-b98d-0f9d624b9ad9/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF321KTO.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -6983646447703991743 chip.macs2_signal_track_pooled -7413543140318289885 BW FC -6983646447703991743->-7413543140318289885 5436862545579064801 BW p-val -6983646447703991743->5436862545579064801 3290837722547204563 chip.call_peak_pooled -3818229103936827439 Peak (bfilt) 3290837722547204563->-3818229103936827439 3010047046837964597 Peak 3290837722547204563->3010047046837964597 -3800041315009426097 chip.idr_ppr 3010047046837964597->-3800041315009426097 1278972358293712812 chip.idr 3010047046837964597->1278972358293712812 4953030997991072569 chip.overlap 3010047046837964597->4953030997991072569 -2995120926301074073 chip.overlap_ppr 3010047046837964597->-2995120926301074073 2532858922043250988 chip.pool_ta -8990576471010889918 TAG-ALIGN 2532858922043250988->-8990576471010889918 -8990576471010889918->-6983646447703991743 -8990576471010889918->3290837722547204563 -8990576471010889918->-3800041315009426097 -8990576471010889918->1278972358293712812 -8990576471010889918->4953030997991072569 -8990576471010889918->-2995120926301074073 -2737101107684504145 chip.call_peak 216793440994161845 Peak (bfilt) -2737101107684504145->216793440994161845 -3275934809603002136 Peak -2737101107684504145->-3275934809603002136 -3275934809603002136->1278972358293712812 -3275934809603002136->4953030997991072569 3219727263936945484 chip.reproducibility_overlap -3275934809603002136->3219727263936945484 -5742795493364052568 chip.reproducibility_idr -3275934809603002136->-5742795493364052568 2049966247235756120 chip.bam2ta 2139216004571274222 TAG-ALIGN 2049966247235756120->2139216004571274222 2139216004571274222->2532858922043250988 2139216004571274222->-2737101107684504145 -8038158939444373172 chip.macs2_signal_track 2139216004571274222->-8038158939444373172 2139216004571274222->-3800041315009426097 2139216004571274222->3219727263936945484 2139216004571274222->-5742795493364052568 2139216004571274222->-2995120926301074073 -8821367499294924389 chip.filter 8359470338678865307 SAMstats QC -8821367499294924389->8359470338678865307 4146275668238998427 Filt/deduped BAM -8821367499294924389->4146275668238998427 1326898377321429780 LibCmplx QC -8821367499294924389->1326898377321429780 4146275668238998427->2049966247235756120 3635626387513776805 chip.jsd 4146275668238998427->3635626387513776805 169882180559442960 chip.align -4038697223042772184 SAMstats QC 169882180559442960->-4038697223042772184 -409653911196554416 BAM 169882180559442960->-409653911196554416 -409653911196554416->-8821367499294924389 6578666055300302275 chip.xcor 3048382452586594021 XCOR Plot 6578666055300302275->3048382452586594021 -8707870471302548080 BW FC -8038158939444373172->-8707870471302548080 775536276120340138 BW p-val -8038158939444373172->775536276120340138 -8642328398623394492 FASTQ R1 (1) -8642328398623394492->169882180559442960 -8642328398623394492->6578666055300302275 -7460302013258119702 FASTQ R2 (1) -7460302013258119702->169882180559442960 -3313041544614411972 chip.call_peak 7081760533273604039 Peak (bfilt) -3313041544614411972->7081760533273604039 -1533846300081021447 Peak -3313041544614411972->-1533846300081021447 -1533846300081021447->1278972358293712812 -1533846300081021447->4953030997991072569 -1533846300081021447->3219727263936945484 -1533846300081021447->-5742795493364052568 -7538627964079957558 chip.bam2ta 3561294832856650121 TAG-ALIGN -7538627964079957558->3561294832856650121 3561294832856650121->2532858922043250988 3561294832856650121->-3313041544614411972 3031100675453083009 chip.macs2_signal_track 3561294832856650121->3031100675453083009 3561294832856650121->-3800041315009426097 3561294832856650121->3219727263936945484 3561294832856650121->-5742795493364052568 3561294832856650121->-2995120926301074073 -5419135561767624324 chip.filter -4017869758764468812 SAMstats QC -5419135561767624324->-4017869758764468812 7166820491586086487 Filt/deduped BAM -5419135561767624324->7166820491586086487 3261934145198132770 LibCmplx QC -5419135561767624324->3261934145198132770 7166820491586086487->-7538627964079957558 7166820491586086487->3635626387513776805 -8296992255903668125 chip.align 1535667017249550528 SAMstats QC -8296992255903668125->1535667017249550528 -1388352481473935382 BAM -8296992255903668125->-1388352481473935382 -1388352481473935382->-5419135561767624324 3004835122671635628 chip.xcor -563252345844904739 XCOR Plot 3004835122671635628->-563252345844904739 -199108624113492751 BW FC 3031100675453083009->-199108624113492751 -1289660634036993587 BW p-val 3031100675453083009->-1289660634036993587 -7198874980744143343 FASTQ R1 (1) -7198874980744143343->-8296992255903668125 -7198874980744143343->3004835122671635628 -6688206303969221357 FASTQ R2 (1) -6688206303969221357->-8296992255903668125 -7106652130971520133 chip.pool_ta_ctl -7492889284971511657 TAG-ALIGN -7106652130971520133->-7492889284971511657 -7492889284971511657->-6983646447703991743 -7492889284971511657->3290837722547204563 -7492889284971511657->-2737101107684504145 -7492889284971511657->-8038158939444373172 -7492889284971511657->-3313041544614411972 -7492889284971511657->3031100675453083009 -7492889284971511657->-3800041315009426097 -7492889284971511657->3219727263936945484 -7492889284971511657->-5742795493364052568 -7492889284971511657->-2995120926301074073 -182056910097264937 chip.bam2ta_ctl 1245132491887007679 TAG-ALIGN -182056910097264937->1245132491887007679 1245132491887007679->-7106652130971520133 4481810736786136825 Filt/deduped BAM 4481810736786136825->-182056910097264937 4481810736786136825->3635626387513776805 5762293587940877085 chip.bam2ta_ctl 4049402691228266598 TAG-ALIGN 5762293587940877085->4049402691228266598 4049402691228266598->-7106652130971520133 254867841453860135 Filt/deduped BAM 254867841453860135->5762293587940877085 254867841453860135->3635626387513776805 -1941455069759778091 chip.bam2ta_ctl -5101939062681219177 TAG-ALIGN -1941455069759778091->-5101939062681219177 -5101939062681219177->-7106652130971520133 7104949189001522249 Filt/deduped BAM 7104949189001522249->-1941455069759778091 7104949189001522249->3635626387513776805 6364402312759850262 chip.bam2ta_ctl -8034402743838991874 TAG-ALIGN 6364402312759850262->-8034402743838991874 -8034402743838991874->-7106652130971520133 -2788089239897695142 Filt/deduped BAM -2788089239897695142->6364402312759850262 -2788089239897695142->3635626387513776805 4792049996028612240 chip.bam2ta_ctl 24126066198890314 TAG-ALIGN 4792049996028612240->24126066198890314 24126066198890314->-7106652130971520133 1078757223305444125 Filt/deduped BAM 1078757223305444125->4792049996028612240 1078757223305444125->3635626387513776805 -3983747915545638360 chip.bam2ta_ctl 8386450053754104645 TAG-ALIGN -3983747915545638360->8386450053754104645 8386450053754104645->-7106652130971520133 2257130326398995895 Filt/deduped BAM 2257130326398995895->-3983747915545638360 2257130326398995895->3635626387513776805 -5970066057818643182 chip.bam2ta_ctl -2857960236845886355 TAG-ALIGN -5970066057818643182->-2857960236845886355 -2857960236845886355->-7106652130971520133 -7000320176765286404 Filt/deduped BAM -7000320176765286404->-5970066057818643182 -7000320176765286404->3635626387513776805 2944936106482633516 chip.bam2ta_ctl 6228151373741604110 TAG-ALIGN 2944936106482633516->6228151373741604110 6228151373741604110->-7106652130971520133 4246149425446784076 Filt/deduped BAM 4246149425446784076->2944936106482633516 4246149425446784076->3635626387513776805 3691444810761253310 chip.bam2ta_ctl 2248678120109554143 TAG-ALIGN 3691444810761253310->2248678120109554143 2248678120109554143->-7106652130971520133 -4401235258951329408 Filt/deduped BAM -4401235258951329408->3691444810761253310 -4401235258951329408->3635626387513776805 -3395388932114549590 chip.bam2ta_ctl -7967461892990821693 TAG-ALIGN -3395388932114549590->-7967461892990821693 -7967461892990821693->-7106652130971520133 -6744269911191115137 Filt/deduped BAM -6744269911191115137->-3395388932114549590 -6744269911191115137->3635626387513776805 -8390433728938012666 chip.bam2ta_ctl -8592766278383075596 TAG-ALIGN -8390433728938012666->-8592766278383075596 -8592766278383075596->-7106652130971520133 9059969437574301619 Filt/deduped BAM 9059969437574301619->-8390433728938012666 9059969437574301619->3635626387513776805 4402490596642468757 chip.bam2ta_ctl 8425972054702214725 TAG-ALIGN 4402490596642468757->8425972054702214725 8425972054702214725->-7106652130971520133 -7170058183826451480 Filt/deduped BAM -7170058183826451480->4402490596642468757 -7170058183826451480->3635626387513776805 -8632603944184043090 chip.bam2ta_ctl -4200276895739599866 TAG-ALIGN -8632603944184043090->-4200276895739599866 -4200276895739599866->-7106652130971520133 -5274048365396065029 Filt/deduped BAM -5274048365396065029->-8632603944184043090 -5274048365396065029->3635626387513776805 -7318325554879186467 chip.bam2ta_ctl 1033256866792368549 TAG-ALIGN -7318325554879186467->1033256866792368549 1033256866792368549->-7106652130971520133 -1345152233687549286 Filt/deduped BAM -1345152233687549286->-7318325554879186467 -1345152233687549286->3635626387513776805 -8797860664039589469 chip.bam2ta_ctl 6397330064268355072 TAG-ALIGN -8797860664039589469->6397330064268355072 6397330064268355072->-7106652130971520133 6848087474267574194 Filt/deduped BAM 6848087474267574194->-8797860664039589469 6848087474267574194->3635626387513776805 -6965536568511107649 chip.bam2ta_ctl -5134659079590632770 TAG-ALIGN -6965536568511107649->-5134659079590632770 -5134659079590632770->-7106652130971520133 8763920984369556147 Filt/deduped BAM 8763920984369556147->-6965536568511107649 8763920984369556147->3635626387513776805 5488235308858388422 chip.bam2ta_ctl 6201093461801798710 TAG-ALIGN 5488235308858388422->6201093461801798710 6201093461801798710->-7106652130971520133 -3192156999042946297 Filt/deduped BAM -3192156999042946297->5488235308858388422 -3192156999042946297->3635626387513776805 -5087479345464516927 chip.bam2ta_ctl -6119858908467142853 TAG-ALIGN -5087479345464516927->-6119858908467142853 -6119858908467142853->-7106652130971520133 -7758840035725899004 Filt/deduped BAM -7758840035725899004->-5087479345464516927 -7758840035725899004->3635626387513776805 -3718661122191972967 chip.bam2ta_ctl 4037718589561020796 TAG-ALIGN -3718661122191972967->4037718589561020796 4037718589561020796->-7106652130971520133 6170231042067062156 Filt/deduped BAM 6170231042067062156->-3718661122191972967 6170231042067062156->3635626387513776805 -7521284913699857230 chip.bam2ta_ctl -1884770406649268019 TAG-ALIGN -7521284913699857230->-1884770406649268019 -1884770406649268019->-7106652130971520133 -7350711642877847257 Filt/deduped BAM -7350711642877847257->-7521284913699857230 -7350711642877847257->3635626387513776805 8474615859035065494 chip.bam2ta_ctl -5580203062541812253 TAG-ALIGN 8474615859035065494->-5580203062541812253 -5580203062541812253->-7106652130971520133 1388472238478577512 Filt/deduped BAM 1388472238478577512->8474615859035065494 1388472238478577512->3635626387513776805 2296976081158494719 chip.bam2ta_ctl 364662028734461171 TAG-ALIGN 2296976081158494719->364662028734461171 364662028734461171->-7106652130971520133 -5659868365361190126 Filt/deduped BAM -5659868365361190126->2296976081158494719 -5659868365361190126->3635626387513776805 4949497734790404821 chip.bam2ta_ctl 8424739629834612975 TAG-ALIGN 4949497734790404821->8424739629834612975 8424739629834612975->-7106652130971520133 -4589396796857474251 Filt/deduped BAM -4589396796857474251->4949497734790404821 -4589396796857474251->3635626387513776805 6053911116892803175 chip.bam2ta_ctl -4339530253733749424 TAG-ALIGN 6053911116892803175->-4339530253733749424 -4339530253733749424->-7106652130971520133 8995337154401486865 Filt/deduped BAM 8995337154401486865->6053911116892803175 8995337154401486865->3635626387513776805 -6045711840362761865 IDR Plot ppr -3800041315009426097->-6045711840362761865 5447130037643268279 IDR Peak ppr -3800041315009426097->5447130037643268279 5447130037643268279->-5742795493364052568 -3936451247088654995 IDR Plot rep1_vs_rep2 1278972358293712812->-3936451247088654995 -5214027424003032839 IDR NPeak rep1_vs_rep2 1278972358293712812->-5214027424003032839 -5214027424003032839->-5742795493364052568 4812525456058607442 Overlap Peak rep1_vs_rep2 4953030997991072569->4812525456058607442 4812525456058607442->3219727263936945484 9179970505407628264 Overlap Peak optimal 3219727263936945484->9179970505407628264 2753289180261187428 Overlap reproducibility 3219727263936945484->2753289180261187428 6599106681381024003 IDR Peak optimal -5742795493364052568->6599106681381024003 -9197801171844261916 IDR reproducibility -5742795493364052568->-9197801171844261916 -8548876817502817077 Overlap Peak ppr -2995120926301074073->-8548876817502817077 -8548876817502817077->3219727263936945484 -8891789060967622939 JSD Plot 3635626387513776805->-8891789060967622939

UCSC browser tracks

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