File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF441TFK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF441TFK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF441TFK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF441TFK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF441TFK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF981AUN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF981AUN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF981AUN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF981AUN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF981AUN.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.599M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.599M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.599M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF441TFK.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF441TFK.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF441TFK.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF441TFK.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF441TFK.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF441TFK.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF441TFK.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF441TFK.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF981AUN.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF981AUN.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF981AUN.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF981AUN.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF981AUN.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF981AUN.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF981AUN.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF981AUN.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.599M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF441TFK.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF441TFK.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF441TFK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF441TFK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF441TFK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF441TFK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF441TFK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF441TFK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF981AUN.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF981AUN.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF981AUN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF981AUN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF981AUN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF981AUN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF981AUN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF981AUN.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF441TFK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/96c7e408-d959-4787-a094-25b7d2aceb0b/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.599M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.599M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF441TFK.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF981AUN.crop_101-2bp.nodup_x_ctl.pooled.316M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5840504984836085976 chip.macs2_signal_track_pooled -3383677972363130733 BW FC 5840504984836085976->-3383677972363130733 5301871635556075768 BW p-val 5840504984836085976->5301871635556075768 -1293687659947222944 chip.call_peak_pooled 724683318452568257 Peak (bfilt) -1293687659947222944->724683318452568257 -7870565252151211179 Peak -1293687659947222944->-7870565252151211179 -10936466590659064 chip.idr_ppr -7870565252151211179->-10936466590659064 3264574126038244218 chip.idr -7870565252151211179->3264574126038244218 8196909249953891065 chip.overlap -7870565252151211179->8196909249953891065 -3593111836172393730 chip.overlap_ppr -7870565252151211179->-3593111836172393730 -996900611782737822 chip.pool_ta 2435809144727727186 TAG-ALIGN -996900611782737822->2435809144727727186 2435809144727727186->5840504984836085976 2435809144727727186->-1293687659947222944 2435809144727727186->-10936466590659064 2435809144727727186->3264574126038244218 2435809144727727186->8196909249953891065 2435809144727727186->-3593111836172393730 7862429360600310673 chip.call_peak -8251675468225830783 Peak (bfilt) 7862429360600310673->-8251675468225830783 -957298718820499127 Peak 7862429360600310673->-957298718820499127 -957298718820499127->3264574126038244218 -957298718820499127->8196909249953891065 6999692663809861422 chip.reproducibility_overlap -957298718820499127->6999692663809861422 -7110291122485013303 chip.reproducibility_idr -957298718820499127->-7110291122485013303 -7785408758728115027 chip.bam2ta -1109305209880853780 TAG-ALIGN -7785408758728115027->-1109305209880853780 -1109305209880853780->-996900611782737822 -1109305209880853780->7862429360600310673 7686375424172420080 chip.macs2_signal_track -1109305209880853780->7686375424172420080 -1109305209880853780->-10936466590659064 -1109305209880853780->6999692663809861422 -1109305209880853780->-7110291122485013303 -1109305209880853780->-3593111836172393730 -5355004578364489274 chip.filter -3812195247725939091 SAMstats QC -5355004578364489274->-3812195247725939091 -7531552707140372266 Filt/deduped BAM -5355004578364489274->-7531552707140372266 -8217405721689751504 LibCmplx QC -5355004578364489274->-8217405721689751504 -7531552707140372266->-7785408758728115027 1446597263137062130 chip.jsd -7531552707140372266->1446597263137062130 -2719425214674903060 chip.align 5527433627883228585 SAMstats QC -2719425214674903060->5527433627883228585 -2219746044898469058 BAM -2719425214674903060->-2219746044898469058 -2219746044898469058->-5355004578364489274 -260491831830064591 chip.xcor 7357761214098969373 XCOR Plot -260491831830064591->7357761214098969373 2790956369033979585 BW FC 7686375424172420080->2790956369033979585 1253565993565827025 BW p-val 7686375424172420080->1253565993565827025 6276772858199419423 FASTQ R1 (1) 6276772858199419423->-2719425214674903060 6276772858199419423->-260491831830064591 6042803551922293850 FASTQ R2 (1) 6042803551922293850->-2719425214674903060 -2534022545019925867 chip.call_peak 364737680916852039 Peak (bfilt) -2534022545019925867->364737680916852039 2353535880646499617 Peak -2534022545019925867->2353535880646499617 2353535880646499617->3264574126038244218 2353535880646499617->8196909249953891065 2353535880646499617->6999692663809861422 2353535880646499617->-7110291122485013303 6377565895458064772 chip.bam2ta 7037328325481959339 TAG-ALIGN 6377565895458064772->7037328325481959339 7037328325481959339->-996900611782737822 7037328325481959339->-2534022545019925867 -8331878596922736291 chip.macs2_signal_track 7037328325481959339->-8331878596922736291 7037328325481959339->-10936466590659064 7037328325481959339->6999692663809861422 7037328325481959339->-7110291122485013303 7037328325481959339->-3593111836172393730 -4304549645284130150 chip.filter -1605869246364397399 SAMstats QC -4304549645284130150->-1605869246364397399 3514398062627728221 Filt/deduped BAM -4304549645284130150->3514398062627728221 -5474004601836892837 LibCmplx QC -4304549645284130150->-5474004601836892837 3514398062627728221->6377565895458064772 3514398062627728221->1446597263137062130 -3109438024408291388 chip.align 2038492887337788569 SAMstats QC -3109438024408291388->2038492887337788569 6511040604068707070 BAM -3109438024408291388->6511040604068707070 6511040604068707070->-4304549645284130150 -3649803512599131440 chip.xcor -362738560345549327 XCOR Plot -3649803512599131440->-362738560345549327 6100312971198555415 BW FC -8331878596922736291->6100312971198555415 5658754666118672748 BW p-val -8331878596922736291->5658754666118672748 5057755916126478396 FASTQ R1 (1) 5057755916126478396->-3109438024408291388 5057755916126478396->-3649803512599131440 -7885284571584663036 FASTQ R2 (1) -7885284571584663036->-3109438024408291388 6177183055294499138 chip.pool_ta_ctl -4171220127343256425 TAG-ALIGN 6177183055294499138->-4171220127343256425 -4171220127343256425->5840504984836085976 -4171220127343256425->-1293687659947222944 -4171220127343256425->7862429360600310673 -4171220127343256425->7686375424172420080 -4171220127343256425->-2534022545019925867 -4171220127343256425->-8331878596922736291 -4171220127343256425->-10936466590659064 -4171220127343256425->6999692663809861422 -4171220127343256425->-7110291122485013303 -4171220127343256425->-3593111836172393730 -2893702282644850234 chip.bam2ta_ctl -1476156300593308205 TAG-ALIGN -2893702282644850234->-1476156300593308205 -1476156300593308205->6177183055294499138 -7985989692229827330 Filt/deduped BAM -7985989692229827330->-2893702282644850234 -7985989692229827330->1446597263137062130 8944235274856952038 chip.bam2ta_ctl -1288959899506324466 TAG-ALIGN 8944235274856952038->-1288959899506324466 -1288959899506324466->6177183055294499138 2285645157676993022 Filt/deduped BAM 2285645157676993022->8944235274856952038 2285645157676993022->1446597263137062130 -4744250038103577580 chip.bam2ta_ctl -5073646095459593532 TAG-ALIGN -4744250038103577580->-5073646095459593532 -5073646095459593532->6177183055294499138 -8720861319462639789 Filt/deduped BAM -8720861319462639789->-4744250038103577580 -8720861319462639789->1446597263137062130 4603477320553954820 chip.bam2ta_ctl -808677859666835967 TAG-ALIGN 4603477320553954820->-808677859666835967 -808677859666835967->6177183055294499138 -8164793217104793225 Filt/deduped BAM -8164793217104793225->4603477320553954820 -8164793217104793225->1446597263137062130 -3717684931413157932 chip.bam2ta_ctl -5486472556957715819 TAG-ALIGN -3717684931413157932->-5486472556957715819 -5486472556957715819->6177183055294499138 4303325563975872614 Filt/deduped BAM 4303325563975872614->-3717684931413157932 4303325563975872614->1446597263137062130 7092510392436097733 chip.bam2ta_ctl 4217330436965584081 TAG-ALIGN 7092510392436097733->4217330436965584081 4217330436965584081->6177183055294499138 8278112172296588108 Filt/deduped BAM 8278112172296588108->7092510392436097733 8278112172296588108->1446597263137062130 5766105188561858575 chip.bam2ta_ctl 7435990511628446933 TAG-ALIGN 5766105188561858575->7435990511628446933 7435990511628446933->6177183055294499138 2063561156351887071 Filt/deduped BAM 2063561156351887071->5766105188561858575 2063561156351887071->1446597263137062130 -4509189931672762606 chip.bam2ta_ctl 9022116707698477092 TAG-ALIGN -4509189931672762606->9022116707698477092 9022116707698477092->6177183055294499138 7795018908999622410 Filt/deduped BAM 7795018908999622410->-4509189931672762606 7795018908999622410->1446597263137062130 -5291041512778635099 chip.bam2ta_ctl -1140763631189678386 TAG-ALIGN -5291041512778635099->-1140763631189678386 -1140763631189678386->6177183055294499138 -1433054022374652066 Filt/deduped BAM -1433054022374652066->-5291041512778635099 -1433054022374652066->1446597263137062130 2031362393568676149 chip.bam2ta_ctl 6737645328167066801 TAG-ALIGN 2031362393568676149->6737645328167066801 6737645328167066801->6177183055294499138 8993724585377406000 Filt/deduped BAM 8993724585377406000->2031362393568676149 8993724585377406000->1446597263137062130 -5444119572449893073 chip.bam2ta_ctl -8508585665681790315 TAG-ALIGN -5444119572449893073->-8508585665681790315 -8508585665681790315->6177183055294499138 3491990015025402203 Filt/deduped BAM 3491990015025402203->-5444119572449893073 3491990015025402203->1446597263137062130 -7435728662903054013 chip.bam2ta_ctl 5769051387342291534 TAG-ALIGN -7435728662903054013->5769051387342291534 5769051387342291534->6177183055294499138 -1181546866927812035 Filt/deduped BAM -1181546866927812035->-7435728662903054013 -1181546866927812035->1446597263137062130 -4595915979522954534 chip.bam2ta_ctl 4779734260146047268 TAG-ALIGN -4595915979522954534->4779734260146047268 4779734260146047268->6177183055294499138 -5995667850795654865 Filt/deduped BAM -5995667850795654865->-4595915979522954534 -5995667850795654865->1446597263137062130 -2944879935049373684 chip.bam2ta_ctl -7348782418798572892 TAG-ALIGN -2944879935049373684->-7348782418798572892 -7348782418798572892->6177183055294499138 1311863069841643690 Filt/deduped BAM 1311863069841643690->-2944879935049373684 1311863069841643690->1446597263137062130 -4629013585255636002 chip.bam2ta_ctl -8814273571020535858 TAG-ALIGN -4629013585255636002->-8814273571020535858 -8814273571020535858->6177183055294499138 3762279246360406303 Filt/deduped BAM 3762279246360406303->-4629013585255636002 3762279246360406303->1446597263137062130 7828280738203735585 chip.bam2ta_ctl 5545700993708659908 TAG-ALIGN 7828280738203735585->5545700993708659908 5545700993708659908->6177183055294499138 4809696786987825317 Filt/deduped BAM 4809696786987825317->7828280738203735585 4809696786987825317->1446597263137062130 4589985985711779413 chip.bam2ta_ctl -4300485371361837707 TAG-ALIGN 4589985985711779413->-4300485371361837707 -4300485371361837707->6177183055294499138 3706979764732365915 Filt/deduped BAM 3706979764732365915->4589985985711779413 3706979764732365915->1446597263137062130 5981668386727419327 chip.bam2ta_ctl 8496645902113849973 TAG-ALIGN 5981668386727419327->8496645902113849973 8496645902113849973->6177183055294499138 -8723271206980477518 Filt/deduped BAM -8723271206980477518->5981668386727419327 -8723271206980477518->1446597263137062130 -4361469742048240932 chip.bam2ta_ctl -3100648697762395011 TAG-ALIGN -4361469742048240932->-3100648697762395011 -3100648697762395011->6177183055294499138 2470416792759300524 Filt/deduped BAM 2470416792759300524->-4361469742048240932 2470416792759300524->1446597263137062130 -6577493496513682568 chip.bam2ta_ctl 9131260263142608631 TAG-ALIGN -6577493496513682568->9131260263142608631 9131260263142608631->6177183055294499138 3494270788300270369 Filt/deduped BAM 3494270788300270369->-6577493496513682568 3494270788300270369->1446597263137062130 -4563010595809928979 chip.bam2ta_ctl -4724599743924111435 TAG-ALIGN -4563010595809928979->-4724599743924111435 -4724599743924111435->6177183055294499138 2618836147647879279 Filt/deduped BAM 2618836147647879279->-4563010595809928979 2618836147647879279->1446597263137062130 -1554912530004513421 chip.bam2ta_ctl 7171876878325405725 TAG-ALIGN -1554912530004513421->7171876878325405725 7171876878325405725->6177183055294499138 2209987027288131226 Filt/deduped BAM 2209987027288131226->-1554912530004513421 2209987027288131226->1446597263137062130 -3046297470072264400 chip.bam2ta_ctl -8848347798113115478 TAG-ALIGN -3046297470072264400->-8848347798113115478 -8848347798113115478->6177183055294499138 -4459218759884011767 Filt/deduped BAM -4459218759884011767->-3046297470072264400 -4459218759884011767->1446597263137062130 -7442166526500933347 chip.bam2ta_ctl 6158441004655522395 TAG-ALIGN -7442166526500933347->6158441004655522395 6158441004655522395->6177183055294499138 3739274674618182792 Filt/deduped BAM 3739274674618182792->-7442166526500933347 3739274674618182792->1446597263137062130 4265345224311808349 IDR Plot ppr -10936466590659064->4265345224311808349 4876663332908131599 IDR Peak ppr -10936466590659064->4876663332908131599 4876663332908131599->-7110291122485013303 -5099143509512962599 IDR Plot rep1_vs_rep2 3264574126038244218->-5099143509512962599 -7549588078764113045 IDR NPeak rep1_vs_rep2 3264574126038244218->-7549588078764113045 -7549588078764113045->-7110291122485013303 -3626196757910064687 Overlap Peak rep1_vs_rep2 8196909249953891065->-3626196757910064687 -3626196757910064687->6999692663809861422 -8785449441041415474 Overlap Peak optimal 6999692663809861422->-8785449441041415474 -7018695735044545947 Overlap reproducibility 6999692663809861422->-7018695735044545947 -8542636446500989785 IDR Peak optimal -7110291122485013303->-8542636446500989785 -4859051598657878964 IDR reproducibility -7110291122485013303->-4859051598657878964 -4849602058239785128 Overlap Peak ppr -3593111836172393730->-4849602058239785128 -4849602058239785128->6999692663809861422 256134840439379170 JSD Plot 1446597263137062130->256134840439379170

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/c70cd293-cd17-46a9-bf91-9fae8b34bdc1/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.599M.pval.signal.bigwig?Expires=1601333534&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=MLQz4hTcDM74hNXalnnt5zgnuRtpH42Hmib3CRgLfXgMKV8eDR822R7V5JUaWKbm51oAUnRDDIFwZe5Q7CrxnLrWlLiMUV%2Fp2mrpPAVqYodGdwZFQ%2Bci%2BcaUu1lzaBJFb6CgdjM5WZoUfY7mqb7skxlrc4Jap0Wr%2BLODf%2BSE%2Fh2lMd5qCXzh%2F%2BtmtRO9HUAgPZcLuRS%2FLuEK1fwE28s5GnqHVLV6AwlvPEFwTmE5oDn05CZjlny58C0tnYQgoqawtDHAM5zPh5C869N6o4zKh4iJgYi1QFG3yDiQDHWIHGYJ7P3n6h3ftqQnpKb64sJ9j4xe4K6thSskrFhiiwWrLA%3D%3D"
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