File table
Expand all    Collapse all
FilesPath
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 4612792198387924870 chip.macs2_signal_track_pooled 386869157818354844 BW FC 4612792198387924870->386869157818354844 -2403770718779608069 BW p-val 4612792198387924870->-2403770718779608069 2427236615584840910 chip.call_peak_pooled 2797328841726977596 Peak (bfilt) 2427236615584840910->2797328841726977596 -1475384602821868355 Peak 2427236615584840910->-1475384602821868355 -4854235226708444780 chip.idr_ppr -1475384602821868355->-4854235226708444780 1872348490629248838 chip.idr -1475384602821868355->1872348490629248838 -6590158151177312825 chip.overlap -1475384602821868355->-6590158151177312825 -7425971294853961957 chip.overlap_ppr -1475384602821868355->-7425971294853961957 9044562102796653348 chip.pool_ta 6347319101786097908 TAG-ALIGN 9044562102796653348->6347319101786097908 6347319101786097908->4612792198387924870 6347319101786097908->2427236615584840910 6347319101786097908->-4854235226708444780 6347319101786097908->1872348490629248838 6347319101786097908->-6590158151177312825 6347319101786097908->-7425971294853961957 -304924053880786121 chip.call_peak -8089639716070954457 Peak (bfilt) -304924053880786121->-8089639716070954457 1974012819399968760 Peak -304924053880786121->1974012819399968760 1974012819399968760->1872348490629248838 1974012819399968760->-6590158151177312825 4793735033695167930 chip.reproducibility_overlap 1974012819399968760->4793735033695167930 4093988221302763234 chip.reproducibility_idr 1974012819399968760->4093988221302763234 4454682269865146322 chip.bam2ta 5946146023902520246 TAG-ALIGN 4454682269865146322->5946146023902520246 5946146023902520246->9044562102796653348 5946146023902520246->-304924053880786121 -4004718036529125930 chip.macs2_signal_track 5946146023902520246->-4004718036529125930 5946146023902520246->-4854235226708444780 5946146023902520246->4793735033695167930 5946146023902520246->4093988221302763234 5946146023902520246->-7425971294853961957 -8933527299105185437 chip.filter -5941547473501769522 SAMstats QC -8933527299105185437->-5941547473501769522 -879603871838371424 Filt/deduped BAM -8933527299105185437->-879603871838371424 -4781538935698762633 LibCmplx QC -8933527299105185437->-4781538935698762633 -879603871838371424->4454682269865146322 -6182971199272108103 chip.jsd -879603871838371424->-6182971199272108103 -817756006742373858 chip.align -5329981581695500296 SAMstats QC -817756006742373858->-5329981581695500296 9068219492902005157 BAM -817756006742373858->9068219492902005157 9068219492902005157->-8933527299105185437 -101146697183876865 chip.xcor 3301780750738282816 XCOR Plot -101146697183876865->3301780750738282816 3813178730630129429 BW FC -4004718036529125930->3813178730630129429 -3879555334175725864 BW p-val -4004718036529125930->-3879555334175725864 -980496728243133831 FASTQ R1 (1) -980496728243133831->-817756006742373858 -980496728243133831->-101146697183876865 -7576710615537383378 FASTQ R2 (1) -7576710615537383378->-817756006742373858 -8617049013555791634 chip.call_peak -7602412657660846923 Peak (bfilt) -8617049013555791634->-7602412657660846923 -8090902470137594246 Peak -8617049013555791634->-8090902470137594246 -8090902470137594246->1872348490629248838 -8090902470137594246->-6590158151177312825 -8090902470137594246->4793735033695167930 -8090902470137594246->4093988221302763234 -8615530396123575939 chip.bam2ta -4878622875504182319 TAG-ALIGN -8615530396123575939->-4878622875504182319 -4878622875504182319->9044562102796653348 -4878622875504182319->-8617049013555791634 -7029282432817650179 chip.macs2_signal_track -4878622875504182319->-7029282432817650179 -4878622875504182319->-4854235226708444780 -4878622875504182319->4793735033695167930 -4878622875504182319->4093988221302763234 -4878622875504182319->-7425971294853961957 -808427360702574833 chip.filter 4840845548658869854 SAMstats QC -808427360702574833->4840845548658869854 -1786407214394046627 Filt/deduped BAM -808427360702574833->-1786407214394046627 -1349603781800711211 LibCmplx QC -808427360702574833->-1349603781800711211 -1786407214394046627->-8615530396123575939 -1786407214394046627->-6182971199272108103 -1886382487718502393 chip.align -2791493934756912772 SAMstats QC -1886382487718502393->-2791493934756912772 -872421899017125895 BAM -1886382487718502393->-872421899017125895 -872421899017125895->-808427360702574833 5616740689014104905 chip.xcor -7010766837519021711 XCOR Plot 5616740689014104905->-7010766837519021711 -6586587851655147837 BW FC -7029282432817650179->-6586587851655147837 -4413886710950142683 BW p-val -7029282432817650179->-4413886710950142683 342822238655185657 FASTQ R1 (1) 342822238655185657->-1886382487718502393 342822238655185657->5616740689014104905 -8254158103809621214 FASTQ R2 (1) -8254158103809621214->-1886382487718502393 -1195871620554204157 chip.pool_ta_ctl 1474948467619403045 TAG-ALIGN -1195871620554204157->1474948467619403045 1474948467619403045->4612792198387924870 1474948467619403045->2427236615584840910 1474948467619403045->-304924053880786121 1474948467619403045->-4004718036529125930 1474948467619403045->-8617049013555791634 1474948467619403045->-7029282432817650179 1474948467619403045->-4854235226708444780 1474948467619403045->4793735033695167930 1474948467619403045->4093988221302763234 1474948467619403045->-7425971294853961957 4801440544385983652 chip.bam2ta_ctl -1706349064368209782 TAG-ALIGN 4801440544385983652->-1706349064368209782 -1706349064368209782->-1195871620554204157 -3623489880172419923 Filt/deduped BAM -3623489880172419923->4801440544385983652 -3623489880172419923->-6182971199272108103 -3989316779897646521 chip.bam2ta_ctl -4201805624520289462 TAG-ALIGN -3989316779897646521->-4201805624520289462 -4201805624520289462->-1195871620554204157 282182924567947161 Filt/deduped BAM 282182924567947161->-3989316779897646521 282182924567947161->-6182971199272108103 -760453733017215640 chip.bam2ta_ctl -8565315348970573922 TAG-ALIGN -760453733017215640->-8565315348970573922 -8565315348970573922->-1195871620554204157 -6012810125291952793 Filt/deduped BAM -6012810125291952793->-760453733017215640 -6012810125291952793->-6182971199272108103 8546176961329737178 chip.bam2ta_ctl -1555712066291660811 TAG-ALIGN 8546176961329737178->-1555712066291660811 -1555712066291660811->-1195871620554204157 736496763350045059 Filt/deduped BAM 736496763350045059->8546176961329737178 736496763350045059->-6182971199272108103 -2106800645243126351 chip.bam2ta_ctl -5921918293555574573 TAG-ALIGN -2106800645243126351->-5921918293555574573 -5921918293555574573->-1195871620554204157 -660114978023589277 Filt/deduped BAM -660114978023589277->-2106800645243126351 -660114978023589277->-6182971199272108103 7796442434466943153 chip.bam2ta_ctl -1076622563213472285 TAG-ALIGN 7796442434466943153->-1076622563213472285 -1076622563213472285->-1195871620554204157 -3338202302545253956 Filt/deduped BAM -3338202302545253956->7796442434466943153 -3338202302545253956->-6182971199272108103 3568585240497188630 IDR Plot ppr -4854235226708444780->3568585240497188630 -7892618294745563113 IDR Peak ppr -4854235226708444780->-7892618294745563113 -7892618294745563113->4093988221302763234 3592153007628012161 IDR Plot rep1_vs_rep2 1872348490629248838->3592153007628012161 -6362548533998830450 IDR NPeak rep1_vs_rep2 1872348490629248838->-6362548533998830450 -6362548533998830450->4093988221302763234 4085944928919257813 Overlap Peak rep1_vs_rep2 -6590158151177312825->4085944928919257813 4085944928919257813->4793735033695167930 -5721362170987564785 Overlap Peak optimal 4793735033695167930->-5721362170987564785 2068796380245353978 Overlap reproducibility 4793735033695167930->2068796380245353978 1048464834802642452 IDR Peak optimal 4093988221302763234->1048464834802642452 751257023420930271 IDR reproducibility 4093988221302763234->751257023420930271 8787577979889949603 Overlap Peak ppr -7425971294853961957->8787577979889949603 8787577979889949603->4793735033695167930 9134732712908226362 JSD Plot -6182971199272108103->9134732712908226362

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
track type=bigWig name="MACS2 p-val (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF117GAX.crop_101-2bp.nodup_x_ctl.pooled.409M.pval.signal.bigwig?Expires=1601336073&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=wXO37x%2FWAS6xoZQnA95vy7S355kmhRTdr54elwW7lthR5lNn9jWlOxzHgtROvYg4Ys1xql0w%2Feiim%2FRnS%2FQFv10%2BywDkaA1gAjonSgmYuVbsiF0AMsaLUdILQttkcPsoXQ5mQ3X3MYzcdVCjaBxhf9BbPvSrahxRSFPCwOPKFLsOcnWlhrZKv24SUzPaq9GJFEMtNy%2FQ8%2BIGcvZfU%2FCGuPfJ3G1nYW1mSwOS%2FBuom%2B7yY934XpvUvBEHCZ%2F%2BBSFlUk8oIiHrVrGAkON7QoYUD5SaCv4WL8oHmEiK%2BnGmQWIJezDA%2BIeFjgWGY3TS2d1zuNGb8tye8oy38ely35oThg%3D%3D"
track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF814VNS.crop_101-2bp.nodup_x_ctl.pooled.365M.pval.signal.bigwig?Expires=1601336073&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=wjabIOyed%2FLTlytt4Gvgivh2jbOoZed6YrI3Hy0amfRxS9dDp%2F7S7%2BhIP5sBK1zeqFF2RimJ2nIQzgCufaDt1o91ggE57QgIhAPM%2FhuMc8Dc%2F6HjvayP4m4HybWAFtNGskDYTO%2B8LGKzFAnjDXfkm53Rdu7xnfaBrvVsYGY3f%2FtLc4RfM67urpVlXTrYW1b%2B4Wcplm%2FullI9pOZERlCxbhMzAbkjVpSfbTFHrfMiVUJeAN8pU%2BsLkhQbf8A9YQ9i6T90xWKVecOFSqIaUG7%2B6gGkSUOl40DHgPtOOVQMrdMNqLIb8EzdL3HSwvF4VBe8NaAPlIeQgoEjXpgnnFFwrg%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF117GAX.crop_101-2bp.nodup_x_ctl.pooled.409M.fc.signal.bigwig?Expires=1601336074&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Mze6az%2BjgF9UOf693PD3cIo02xxwwp2l3eHPXPM71mu%2BJYzPbNmRLEQP48%2BqbwWSDqgoiAn2y4SxL5D3pge4eieRnxkLpMHdid%2FaEd446DpiVOCpxLg2eAy3vJ5wx0RzQeq87qlvNet3E0481jo4oK3hZLhNxUSnTCrQtqsHS%2BVG5JS1yPgm5MkeCSNOeMcxz%2FNXo7UOm8vgANZyz%2Bon0EFylnU30XE15nNilxMclg6dsc9D6gPt%2Fx3M31U57XNk5C89rsAFBNTzZU0g3srBdx4y7JM3MkahRvHEalFNVeIeh3rXpfSnGRkNIJ6rEl%2Fvt0w7OwFB3VVm3Qndi5jdgg%3D%3D"
track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF814VNS.crop_101-2bp.nodup_x_ctl.pooled.365M.fc.signal.bigwig?Expires=1601336074&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=F0NLeDmMa2sybwKDlNMBYxCcekUDF6WQL1zEB2x0AThe7r7BlL156iDwfLfoM6zSt6llnThh%2B5ipUmhZWpyU7MiScZblehKmRiczt3r1zDsmEOJbmvxNlaWiCe92l6XNQ%2Fx96wcsPPK1J8v5VEZwupefKPz%2FKKi5gGvJXMu9lRGpg7YWQ%2BWAPvjtg1uoWMmSGEqPg3kyZRVPNsztQnGdJQTKOO6v%2BUOQFqeGw8QWJRN5FycZsRb8c98gUFvhVxlwdx3b4fK7UTN0yj4T%2FaKzmbvk3sgbWAi%2FY%2F8YUNCGbUHdm%2Bsfqvtw3Y9%2Bz%2BxMAH12SpA8falWS%2BBgGxQ3RKagOQ%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig?Expires=1601336074&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=fd1OA4y9R%2Fh0AZ7dq%2BFjbrbdIKZwH4J%2FG9ODoBYS3JC57v8h9WUF55nLlGhoozy3U5PEHLY0%2F2E7gGZnMvF%2BGlQELe7iES1vKiDY9PMkdC31pLTY7lCcJxwpnJFTBaVxG2MPu%2BXduLQqnyjedm0kyAKqnn2QmKpvd1CnSjqYdED36ZuOPs5%2BozYgjmmTn7ALfp9g4SaUKoVuNRJYRi1E%2F4bejNkAaJUp8xWakzQSDEoDyWvAfZVQ0zesjGiH6HG6xcTk5XCGOQ8dqbwpogBQ4L7sgTwxciV8t1clYIcl6AitHznJXV1O%2FmcmS48QKHAGQzYpKMsbxTYSr%2B%2FYJShcQA%3D%3D"
track type=bigWig name="MACS2 fc (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig?Expires=1601336074&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=HhYx%2FKFLomh1PVSEK%2FUVJyM%2BnQPMdJ%2Btz5su46kazpvbHAVvu%2BnBHrtIuH33PA3vxBGGmS7U6QU%2BLmnaUwii5xU%2BU0uPlbyPbSebsVTLLdkQ7pGFWTMafVyoAqL6p7ytn3krIB3VbyWdn0PkJeqvXa1Hy0Ug%2BWmnzeEmlvbeI6DyOC1AkGvBC2hUk17kINjWrrPegii3jNtkuVhqtAFPU6XVRdv%2FFQPPGBZzHzx3WcwNiiMDiEupjHAF0yG4X7zqkPJtW8crR2Slntaod2sBwt9Z%2BE9olQbIdEgdr83fG6cRB3YksbZ%2BuJqhsSV0xLKeN3m9plTpwN%2BnTc0eSUGzhg%3D%3D"
track type=bigBed name="Optimal IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb?Expires=1601336081&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=r8HLxuQFF7htfkHRp8C5ZnQ2sQPrang3ox5%2B6XgjV75%2FaG9X9rox8SWvs7cVXVhLSrMvyYS774XseoPusqikIvO8oRw5KK4sqeSF%2F9HPo%2BQTVLkyAQgeq%2BT4EN%2FMP6wsjsq0UGdh%2FmsGAPG85T%2F0h3bQWbiLPmWxpGnpxGqKlLQUrnj6RfTlNxq5PZJPkwLoyw%2Bl2w2Bpd2Qwq2vB9zu7iasaxBmCTHLTTjFf8zq44mc8742Mr3GBhZDa9lhc1sKKUAC%2FD52mqJzTSVfpzSAvz%2BXFhulABj%2FBby1iXUpGOfd%2Bi5ICT2aZ%2FwGWiz%2BL9HI7kF9PbqXBXUL55NzM%2BGFGA%3D%3D"
track type=bigBed name="Conservative IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb?Expires=1601336082&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=WAUlAkJFVrOCHpxPk%2B0zN6XbNnf8qwPfUObtFMv1PmD%2FQ%2BqD9oZ%2Bn3xx7ZZI5sNKbwg9c3PGkDPLU9hNSFNrM9WXs9HUNZhGhd8lOeiV9NR%2BKfLJorgZGgTSGzWtrR7rgn4oZk9Gp2h5axJcmNhW3CgF7pc4vbUk2Mg%2Foswbw9aCL34QrWwSwacdNrgFPJDnZLNn7dGxU5uypODh3XmFPrIwCPW3wmPkdjY%2F6XFMnZiOYBSEU1i2bqBvD018dARXWhJa1bxDSkwKxJX%2Bj0Qegw%2Bsw1jZMvi6CXLbWaI65GC8UL560ouReQF%2BA4R2nWwML8hlDd8DawWdv6Ajvkapcw%3D%3D"
track type=bigBed name="Optimal overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb?Expires=1601336082&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=YMS691GMWqjJGCKEzdIicqFSrS9%2F7tjoXTLjLPopaiGIme158V82zFFSsXmEhheZHf6Zw2uSIHF131vFyOie2%2B%2FGlyj34zKKiWeHmrsHXWhuVATmXoxzMQ5supLzJyvbgjzR4qidOxasSHxwlXk8YKM%2FMh%2BaeTiHK4gvmpbrjM2uHjGAeO4fKceCWBmQ1Hm3hmKEoWlOdVNtPDW5w%2FjHPTUT9y0S%2B%2BLUvNURIN66CBLbp6lgNxXG9Ek5PcdgM8JXYnTjk7v8T5VSDoEieAlNpdgUTU2wzyvpHCsVMrnNSB30moRZfFUgvYjX3eaLtsNUhfTbbNBJi7NQHsh%2FYzyMVw%3D%3D"
track type=bigBed name="Conservative overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/01ee0288-7724-4921-a57f-6e9e177aebb3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb?Expires=1601336083&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=hRlcC1biN0ZHgUX9dhuQdb73jsQfMTytf%2BwvjyD9Q0DsHPUlsj05D9Ptg93TxLPT00KKVLovTkA4sOUpXV1WWk%2FxGC5ezH%2Fo1DrJOEyj34aJrTYWDHQ6uxZVF%2BcfGas%2FH5RoebLLfOrVwvZrPgWZqCZJp4NfU4UT8CpAaIfzKjTc%2Fzr6ind4by0PBF14KmzhzoQ2LFE55D54JeLqx7iy77tFh9oZD%2BxpvS64wmUmvRaO%2BZGDqj6IJP2Hsq2cKZ%2F%2BZdKX31mj0BEcmjruFaE5iFlDlDR7%2BDcYemlxUgAEG1sfHaCNdULW%2BXcq7se9wEgmnwgzauWrrFrg5MiLUt%2FCEQ%3D%3D"