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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF691EHP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF691EHP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF691EHP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF691EHP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF691EHP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF110KHM.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF110KHM.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF110KHM.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF110KHM.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF110KHM.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.718M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.718M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.718M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.718M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF691EHP.crop_101-2bp.nodup.pr1_x_ctl.pooled.397M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF691EHP.crop_101-2bp.nodup.pr1_x_ctl.pooled.397M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF691EHP.crop_101-2bp.nodup.pr1_x_ctl.pooled.397M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF691EHP.crop_101-2bp.nodup.pr1_x_ctl.pooled.397M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF691EHP.crop_101-2bp.nodup.pr2_x_ctl.pooled.397M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF691EHP.crop_101-2bp.nodup.pr2_x_ctl.pooled.397M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF691EHP.crop_101-2bp.nodup.pr2_x_ctl.pooled.397M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF691EHP.crop_101-2bp.nodup.pr2_x_ctl.pooled.397M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF110KHM.crop_101-2bp.nodup.pr1_x_ctl.pooled.321M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF110KHM.crop_101-2bp.nodup.pr1_x_ctl.pooled.321M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF110KHM.crop_101-2bp.nodup.pr1_x_ctl.pooled.321M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF110KHM.crop_101-2bp.nodup.pr1_x_ctl.pooled.321M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF110KHM.crop_101-2bp.nodup.pr2_x_ctl.pooled.321M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF110KHM.crop_101-2bp.nodup.pr2_x_ctl.pooled.321M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF110KHM.crop_101-2bp.nodup.pr2_x_ctl.pooled.321M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF110KHM.crop_101-2bp.nodup.pr2_x_ctl.pooled.321M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.718M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.718M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.718M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF691EHP.crop_101-2bp.nodup.pr1_x_ctl.pooled.397M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF691EHP.crop_101-2bp.nodup.pr2_x_ctl.pooled.397M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF691EHP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF691EHP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF691EHP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF691EHP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF691EHP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF691EHP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF110KHM.crop_101-2bp.nodup.pr1_x_ctl.pooled.321M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF110KHM.crop_101-2bp.nodup.pr2_x_ctl.pooled.321M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF110KHM.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF110KHM.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF110KHM.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF110KHM.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF110KHM.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/302200ba-cb5c-44e0-a280-05ab24ab4117/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF110KHM.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/066f45c5-9c26-48a0-be3f-1e8a920aa10d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/066f45c5-9c26-48a0-be3f-1e8a920aa10d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/066f45c5-9c26-48a0-be3f-1e8a920aa10d/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF691EHP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/a63511ad-69f8-43f9-bdd7-3b42a43e9936/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.718M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.718M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF691EHP.crop_101-2bp.nodup_x_ctl.pooled.397M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/24cc1a43-a7d0-4e38-a78b-4660371fc670/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF110KHM.crop_101-2bp.nodup_x_ctl.pooled.321M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6624720562197784763 chip.macs2_signal_track_pooled 6329094303784268148 BW FC 6624720562197784763->6329094303784268148 1020001495151505268 BW p-val 6624720562197784763->1020001495151505268 -8153011359516193827 chip.call_peak_pooled 3479160474340617073 Peak (bfilt) -8153011359516193827->3479160474340617073 -1431147701570442153 Peak -8153011359516193827->-1431147701570442153 2174649538403932262 chip.idr_ppr -1431147701570442153->2174649538403932262 -1795264539597196428 chip.idr -1431147701570442153->-1795264539597196428 -8045373936521247643 chip.overlap -1431147701570442153->-8045373936521247643 6025746540365548925 chip.overlap_ppr -1431147701570442153->6025746540365548925 -6471361798374446525 chip.pool_ta -3104647861180387460 TAG-ALIGN -6471361798374446525->-3104647861180387460 -3104647861180387460->6624720562197784763 -3104647861180387460->-8153011359516193827 -3104647861180387460->2174649538403932262 -3104647861180387460->-1795264539597196428 -3104647861180387460->-8045373936521247643 -3104647861180387460->6025746540365548925 2068257016389948561 chip.call_peak -742879584298762496 Peak (bfilt) 2068257016389948561->-742879584298762496 1928215096262632380 Peak 2068257016389948561->1928215096262632380 1928215096262632380->-1795264539597196428 1928215096262632380->-8045373936521247643 4017166787978582295 chip.reproducibility_overlap 1928215096262632380->4017166787978582295 -4382666444250606948 chip.reproducibility_idr 1928215096262632380->-4382666444250606948 -545158069623293859 chip.bam2ta 4979704606407772805 TAG-ALIGN -545158069623293859->4979704606407772805 4979704606407772805->-6471361798374446525 4979704606407772805->2068257016389948561 -5501783686450992190 chip.macs2_signal_track 4979704606407772805->-5501783686450992190 4979704606407772805->2174649538403932262 4979704606407772805->4017166787978582295 4979704606407772805->-4382666444250606948 4979704606407772805->6025746540365548925 6612881716131925247 chip.filter 5552808520687294409 SAMstats QC 6612881716131925247->5552808520687294409 -4687500055469720608 Filt/deduped BAM 6612881716131925247->-4687500055469720608 3982797119809890387 LibCmplx QC 6612881716131925247->3982797119809890387 -4687500055469720608->-545158069623293859 5005599840956215911 chip.jsd -4687500055469720608->5005599840956215911 -5002978655381351185 chip.jsd -4687500055469720608->-5002978655381351185 7770584679710132752 chip.align -7440103878707588000 SAMstats QC 7770584679710132752->-7440103878707588000 -7547460659245507759 BAM 7770584679710132752->-7547460659245507759 -7547460659245507759->6612881716131925247 -4065798578904790409 chip.xcor -8033301928595998842 XCOR Plot -4065798578904790409->-8033301928595998842 3462736200167781193 BW FC -5501783686450992190->3462736200167781193 3228208973255006841 BW p-val -5501783686450992190->3228208973255006841 3688171733113138591 FASTQ R1 (1) 3688171733113138591->7770584679710132752 3688171733113138591->-4065798578904790409 7734581692592242023 FASTQ R2 (1) 7734581692592242023->7770584679710132752 5259775668405899712 chip.call_peak -2741729209805040877 Peak (bfilt) 5259775668405899712->-2741729209805040877 2230830889851972842 Peak 5259775668405899712->2230830889851972842 2230830889851972842->-1795264539597196428 2230830889851972842->-8045373936521247643 2230830889851972842->4017166787978582295 2230830889851972842->-4382666444250606948 -3847293869074227752 chip.bam2ta -8090815412740436613 TAG-ALIGN -3847293869074227752->-8090815412740436613 -8090815412740436613->-6471361798374446525 -8090815412740436613->5259775668405899712 6294236654139661219 chip.macs2_signal_track -8090815412740436613->6294236654139661219 -8090815412740436613->2174649538403932262 -8090815412740436613->4017166787978582295 -8090815412740436613->-4382666444250606948 -8090815412740436613->6025746540365548925 -15383695327901017 chip.filter 4022574591365648488 SAMstats QC -15383695327901017->4022574591365648488 941643002025206048 Filt/deduped BAM -15383695327901017->941643002025206048 -7545734647120364124 LibCmplx QC -15383695327901017->-7545734647120364124 941643002025206048->-3847293869074227752 941643002025206048->5005599840956215911 941643002025206048->-5002978655381351185 7539601432620380367 chip.align -7876446308824112969 SAMstats QC 7539601432620380367->-7876446308824112969 -7348112731014647266 BAM 7539601432620380367->-7348112731014647266 -7348112731014647266->-15383695327901017 -8590787071175772787 chip.xcor 6569381483658276532 XCOR Plot -8590787071175772787->6569381483658276532 2364231451359023799 BW FC 6294236654139661219->2364231451359023799 -3517541694962177743 BW p-val 6294236654139661219->-3517541694962177743 -6211773312001307181 FASTQ R1 (1) -6211773312001307181->7539601432620380367 -6211773312001307181->-8590787071175772787 2527855668523012526 FASTQ R2 (1) 2527855668523012526->7539601432620380367 5603445845996716779 chip.pool_ta_ctl -5107985837194794397 TAG-ALIGN 5603445845996716779->-5107985837194794397 -5107985837194794397->6624720562197784763 -5107985837194794397->-8153011359516193827 -5107985837194794397->2068257016389948561 -5107985837194794397->-5501783686450992190 -5107985837194794397->5259775668405899712 -5107985837194794397->6294236654139661219 -5107985837194794397->2174649538403932262 -5107985837194794397->4017166787978582295 -5107985837194794397->-4382666444250606948 -5107985837194794397->6025746540365548925 7276953902611379951 chip.bam2ta_ctl -1293483142267864900 TAG-ALIGN 7276953902611379951->-1293483142267864900 -1293483142267864900->5603445845996716779 2284226114178112390 Filt/deduped BAM 2284226114178112390->7276953902611379951 2284226114178112390->5005599840956215911 2284226114178112390->-5002978655381351185 -4373499077405256823 chip.bam2ta_ctl 1334688486373756814 TAG-ALIGN -4373499077405256823->1334688486373756814 1334688486373756814->5603445845996716779 1949622865073308669 Filt/deduped BAM 1949622865073308669->-4373499077405256823 1949622865073308669->5005599840956215911 1949622865073308669->-5002978655381351185 -2622271669057613294 chip.bam2ta_ctl -4166316559143602107 TAG-ALIGN -2622271669057613294->-4166316559143602107 -4166316559143602107->5603445845996716779 1153290369708418454 Filt/deduped BAM 1153290369708418454->-2622271669057613294 1153290369708418454->5005599840956215911 1153290369708418454->-5002978655381351185 3902040337509031182 chip.bam2ta_ctl -3725333884180353570 TAG-ALIGN 3902040337509031182->-3725333884180353570 -3725333884180353570->5603445845996716779 -7994043945801578760 Filt/deduped BAM -7994043945801578760->3902040337509031182 -7994043945801578760->5005599840956215911 -7994043945801578760->-5002978655381351185 58912866863686058 chip.bam2ta_ctl 4123447004227138523 TAG-ALIGN 58912866863686058->4123447004227138523 4123447004227138523->5603445845996716779 -4081142354264975638 Filt/deduped BAM -4081142354264975638->58912866863686058 -4081142354264975638->5005599840956215911 -4081142354264975638->-5002978655381351185 3326052907253836957 chip.bam2ta_ctl 6668805475058217919 TAG-ALIGN 3326052907253836957->6668805475058217919 6668805475058217919->5603445845996716779 -8076136151895477894 Filt/deduped BAM -8076136151895477894->3326052907253836957 -8076136151895477894->5005599840956215911 -8076136151895477894->-5002978655381351185 -5239435160970752066 chip.bam2ta_ctl 494172050069915067 TAG-ALIGN -5239435160970752066->494172050069915067 494172050069915067->5603445845996716779 3561852217210034032 Filt/deduped BAM 3561852217210034032->-5239435160970752066 3561852217210034032->5005599840956215911 3561852217210034032->-5002978655381351185 8640552321789884612 chip.bam2ta_ctl 4361831930304689762 TAG-ALIGN 8640552321789884612->4361831930304689762 4361831930304689762->5603445845996716779 3437165701475367066 Filt/deduped BAM 3437165701475367066->8640552321789884612 3437165701475367066->5005599840956215911 3437165701475367066->-5002978655381351185 4642521508016739893 chip.bam2ta_ctl -407663217320103914 TAG-ALIGN 4642521508016739893->-407663217320103914 -407663217320103914->5603445845996716779 4262040431681145114 Filt/deduped BAM 4262040431681145114->4642521508016739893 4262040431681145114->5005599840956215911 4262040431681145114->-5002978655381351185 -2507384553359237840 chip.bam2ta_ctl -7505132873668187230 TAG-ALIGN -2507384553359237840->-7505132873668187230 -7505132873668187230->5603445845996716779 -3360244225750336260 Filt/deduped BAM -3360244225750336260->-2507384553359237840 -3360244225750336260->5005599840956215911 -3360244225750336260->-5002978655381351185 4480507829447726250 chip.bam2ta_ctl 4191843226221800013 TAG-ALIGN 4480507829447726250->4191843226221800013 4191843226221800013->5603445845996716779 -7374918188147641474 Filt/deduped BAM -7374918188147641474->4480507829447726250 -7374918188147641474->5005599840956215911 -7374918188147641474->-5002978655381351185 7986967103834900289 chip.bam2ta_ctl -6619002803082156172 TAG-ALIGN 7986967103834900289->-6619002803082156172 -6619002803082156172->5603445845996716779 4121651866637051713 Filt/deduped BAM 4121651866637051713->7986967103834900289 4121651866637051713->5005599840956215911 4121651866637051713->-5002978655381351185 4185918585384214489 chip.bam2ta_ctl 7032732665668896150 TAG-ALIGN 4185918585384214489->7032732665668896150 7032732665668896150->5603445845996716779 -3825496073431420694 Filt/deduped BAM -3825496073431420694->4185918585384214489 -3825496073431420694->5005599840956215911 -3825496073431420694->-5002978655381351185 4015701537642225754 chip.bam2ta_ctl 8035756311384814474 TAG-ALIGN 4015701537642225754->8035756311384814474 8035756311384814474->5603445845996716779 7380794974597844050 Filt/deduped BAM 7380794974597844050->4015701537642225754 7380794974597844050->5005599840956215911 7380794974597844050->-5002978655381351185 -8729698705072166353 chip.bam2ta_ctl 6915079306131231226 TAG-ALIGN -8729698705072166353->6915079306131231226 6915079306131231226->5603445845996716779 -29939851464985606 Filt/deduped BAM -29939851464985606->-8729698705072166353 -29939851464985606->5005599840956215911 -29939851464985606->-5002978655381351185 -1448585094941957384 chip.bam2ta_ctl 4654875847924917711 TAG-ALIGN -1448585094941957384->4654875847924917711 4654875847924917711->5603445845996716779 -3778781586280025939 Filt/deduped BAM -3778781586280025939->-1448585094941957384 -3778781586280025939->5005599840956215911 -3778781586280025939->-5002978655381351185 -2569000532725090056 chip.bam2ta_ctl 4606525055326958743 TAG-ALIGN -2569000532725090056->4606525055326958743 4606525055326958743->5603445845996716779 8324456443271580352 Filt/deduped BAM 8324456443271580352->-2569000532725090056 8324456443271580352->5005599840956215911 8324456443271580352->-5002978655381351185 4940678610972639052 chip.bam2ta_ctl -5315890832638364409 TAG-ALIGN 4940678610972639052->-5315890832638364409 -5315890832638364409->5603445845996716779 -3259598623827422273 Filt/deduped BAM -3259598623827422273->4940678610972639052 -3259598623827422273->5005599840956215911 -3259598623827422273->-5002978655381351185 -7254609690834666563 chip.bam2ta_ctl -6994493199410138702 TAG-ALIGN -7254609690834666563->-6994493199410138702 -6994493199410138702->5603445845996716779 -5137108128232926320 Filt/deduped BAM -5137108128232926320->-7254609690834666563 -5137108128232926320->5005599840956215911 -5137108128232926320->-5002978655381351185 5768557064032602455 chip.bam2ta_ctl -7611048481437436688 TAG-ALIGN 5768557064032602455->-7611048481437436688 -7611048481437436688->5603445845996716779 -2288400357523911333 Filt/deduped BAM -2288400357523911333->5768557064032602455 -2288400357523911333->5005599840956215911 -2288400357523911333->-5002978655381351185 -2948467859689195449 chip.bam2ta_ctl 5891431455928101495 TAG-ALIGN -2948467859689195449->5891431455928101495 5891431455928101495->5603445845996716779 8289770680583840015 Filt/deduped BAM 8289770680583840015->-2948467859689195449 8289770680583840015->5005599840956215911 8289770680583840015->-5002978655381351185 -6579744279399291227 chip.bam2ta_ctl 2205828740568455708 TAG-ALIGN -6579744279399291227->2205828740568455708 2205828740568455708->5603445845996716779 -1648612509863338053 Filt/deduped BAM -1648612509863338053->-6579744279399291227 -1648612509863338053->5005599840956215911 -1648612509863338053->-5002978655381351185 -6881826590768181606 chip.bam2ta_ctl 8813327080286731119 TAG-ALIGN -6881826590768181606->8813327080286731119 8813327080286731119->5603445845996716779 -207132002937308288 Filt/deduped BAM -207132002937308288->-6881826590768181606 -207132002937308288->5005599840956215911 -207132002937308288->-5002978655381351185 856944339089363560 chip.bam2ta_ctl 4889858284703502803 TAG-ALIGN 856944339089363560->4889858284703502803 4889858284703502803->5603445845996716779 -5026379103468749967 Filt/deduped BAM -5026379103468749967->856944339089363560 -5026379103468749967->5005599840956215911 -5026379103468749967->-5002978655381351185 41114453163606742 IDR Plot ppr 2174649538403932262->41114453163606742 6991948853209675201 IDR Peak ppr 2174649538403932262->6991948853209675201 6991948853209675201->-4382666444250606948 -4080171623795569696 IDR Plot rep1_vs_rep2 -1795264539597196428->-4080171623795569696 259600561672630417 IDR NPeak rep1_vs_rep2 -1795264539597196428->259600561672630417 259600561672630417->-4382666444250606948 5023949131820895051 Overlap Peak rep1_vs_rep2 -8045373936521247643->5023949131820895051 5023949131820895051->4017166787978582295 -1104317759522563609 Overlap Peak optimal 4017166787978582295->-1104317759522563609 -3411699052202481262 Overlap reproducibility 4017166787978582295->-3411699052202481262 -6094738822814870995 IDR Peak optimal -4382666444250606948->-6094738822814870995 -598095961942814007 IDR reproducibility -4382666444250606948->-598095961942814007 -6928954978645437411 Overlap Peak ppr 6025746540365548925->-6928954978645437411 -6928954978645437411->4017166787978582295 3718946263261635720 JSD Plot 5005599840956215911->3718946263261635720 -5002978655381351185->3718946263261635720

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