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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF317VCZ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF317VCZ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF317VCZ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF317VCZ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF317VCZ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF664BVY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF664BVY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF664BVY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF664BVY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF664BVY.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.476M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.476M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.476M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.476M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF317VCZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF317VCZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF317VCZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF317VCZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF317VCZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF317VCZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF317VCZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF317VCZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF664BVY.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF664BVY.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF664BVY.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF664BVY.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF664BVY.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF664BVY.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF664BVY.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF664BVY.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.476M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.476M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.476M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF317VCZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.221M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF317VCZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.221M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF317VCZ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF317VCZ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF317VCZ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF317VCZ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF317VCZ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF317VCZ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF664BVY.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF664BVY.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF664BVY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF664BVY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF664BVY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF664BVY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF664BVY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5861a589-b93d-4d59-a039-445dfdbda1d0/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF664BVY.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF317VCZ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/576de9c8-e83c-4641-ad84-742847bafa40/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.476M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.476M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF317VCZ.crop_101-2bp.nodup_x_ctl.pooled.221M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF664BVY.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3705031644843765450 chip.macs2_signal_track_pooled -9090071105764386179 BW FC -3705031644843765450->-9090071105764386179 -1005388544873252646 BW p-val -3705031644843765450->-1005388544873252646 280945796723988563 chip.call_peak_pooled -4100131594046514847 Peak (bfilt) 280945796723988563->-4100131594046514847 1953149747112948772 Peak 280945796723988563->1953149747112948772 -7805296578345354622 chip.idr_ppr 1953149747112948772->-7805296578345354622 2398217551280139244 chip.idr 1953149747112948772->2398217551280139244 -8381640235130599653 chip.overlap 1953149747112948772->-8381640235130599653 3374908679321823492 chip.overlap_ppr 1953149747112948772->3374908679321823492 2039347288898599857 chip.pool_ta -5530471029921131760 TAG-ALIGN 2039347288898599857->-5530471029921131760 -5530471029921131760->-3705031644843765450 -5530471029921131760->280945796723988563 -5530471029921131760->-7805296578345354622 -5530471029921131760->2398217551280139244 -5530471029921131760->-8381640235130599653 -5530471029921131760->3374908679321823492 3405448847697102992 chip.call_peak -3399611889831758922 Peak (bfilt) 3405448847697102992->-3399611889831758922 3363847038721562402 Peak 3405448847697102992->3363847038721562402 3363847038721562402->2398217551280139244 3363847038721562402->-8381640235130599653 -5097577121293584260 chip.reproducibility_overlap 3363847038721562402->-5097577121293584260 7687088587787795844 chip.reproducibility_idr 3363847038721562402->7687088587787795844 -2267656989094653479 chip.bam2ta -6383217540804202724 TAG-ALIGN -2267656989094653479->-6383217540804202724 -6383217540804202724->2039347288898599857 -6383217540804202724->3405448847697102992 3983669648625844809 chip.macs2_signal_track -6383217540804202724->3983669648625844809 -6383217540804202724->-7805296578345354622 -6383217540804202724->-5097577121293584260 -6383217540804202724->7687088587787795844 -6383217540804202724->3374908679321823492 -6459662808926401002 chip.filter 2778752045942354225 SAMstats QC -6459662808926401002->2778752045942354225 -1470984016612963128 Filt/deduped BAM -6459662808926401002->-1470984016612963128 -4860535865480783510 LibCmplx QC -6459662808926401002->-4860535865480783510 -1470984016612963128->-2267656989094653479 -3071007664044404914 chip.jsd -1470984016612963128->-3071007664044404914 -3173488049594186536 chip.jsd -1470984016612963128->-3173488049594186536 2351208091137916214 chip.align -8275458431922384244 SAMstats QC 2351208091137916214->-8275458431922384244 -6132290013895547671 BAM 2351208091137916214->-6132290013895547671 -6132290013895547671->-6459662808926401002 9110818134025699511 chip.xcor 4003942539215085423 XCOR Plot 9110818134025699511->4003942539215085423 4973504741101550339 BW FC 3983669648625844809->4973504741101550339 -4331393663233964643 BW p-val 3983669648625844809->-4331393663233964643 7881922995891444647 FASTQ R1 (1) 7881922995891444647->2351208091137916214 7881922995891444647->9110818134025699511 -6819590553115934424 FASTQ R2 (1) -6819590553115934424->2351208091137916214 7769224271791822097 chip.call_peak -5220597748629296459 Peak (bfilt) 7769224271791822097->-5220597748629296459 1446843602792821094 Peak 7769224271791822097->1446843602792821094 1446843602792821094->2398217551280139244 1446843602792821094->-8381640235130599653 1446843602792821094->-5097577121293584260 1446843602792821094->7687088587787795844 8563047549547914568 chip.bam2ta 626091044536711557 TAG-ALIGN 8563047549547914568->626091044536711557 626091044536711557->2039347288898599857 626091044536711557->7769224271791822097 3297296931245980559 chip.macs2_signal_track 626091044536711557->3297296931245980559 626091044536711557->-7805296578345354622 626091044536711557->-5097577121293584260 626091044536711557->7687088587787795844 626091044536711557->3374908679321823492 2792049644959534749 chip.filter 5708344239842624371 SAMstats QC 2792049644959534749->5708344239842624371 4223278708703790409 Filt/deduped BAM 2792049644959534749->4223278708703790409 -1640903319625023867 LibCmplx QC 2792049644959534749->-1640903319625023867 4223278708703790409->8563047549547914568 4223278708703790409->-3071007664044404914 4223278708703790409->-3173488049594186536 958719850188464701 chip.align 3345246671149741947 SAMstats QC 958719850188464701->3345246671149741947 7746136545826310131 BAM 958719850188464701->7746136545826310131 7746136545826310131->2792049644959534749 6884678734949768526 chip.xcor -6767379330947146838 XCOR Plot 6884678734949768526->-6767379330947146838 -8184400208877223701 BW FC 3297296931245980559->-8184400208877223701 4462430405174641060 BW p-val 3297296931245980559->4462430405174641060 -3707297222798865570 FASTQ R1 (1) -3707297222798865570->958719850188464701 -3707297222798865570->6884678734949768526 -5467773848389069569 FASTQ R2 (1) -5467773848389069569->958719850188464701 -6417019141101352873 chip.pool_ta_ctl -5204790301924633362 TAG-ALIGN -6417019141101352873->-5204790301924633362 -5204790301924633362->-3705031644843765450 -5204790301924633362->280945796723988563 -5204790301924633362->3405448847697102992 -5204790301924633362->3983669648625844809 -5204790301924633362->7769224271791822097 -5204790301924633362->3297296931245980559 -5204790301924633362->-7805296578345354622 -5204790301924633362->-5097577121293584260 -5204790301924633362->7687088587787795844 -5204790301924633362->3374908679321823492 -5444668143264380275 chip.bam2ta_ctl 142018644799934658 TAG-ALIGN -5444668143264380275->142018644799934658 142018644799934658->-6417019141101352873 -8475732352592753168 Filt/deduped BAM -8475732352592753168->-5444668143264380275 -8475732352592753168->-3071007664044404914 -8475732352592753168->-3173488049594186536 -9081535061137952400 chip.bam2ta_ctl -6859534689274578218 TAG-ALIGN -9081535061137952400->-6859534689274578218 -6859534689274578218->-6417019141101352873 -6358800247830229838 Filt/deduped BAM -6358800247830229838->-9081535061137952400 -6358800247830229838->-3071007664044404914 -6358800247830229838->-3173488049594186536 8728679687023506507 chip.bam2ta_ctl 5754977717736113491 TAG-ALIGN 8728679687023506507->5754977717736113491 5754977717736113491->-6417019141101352873 -916146019547215697 Filt/deduped BAM -916146019547215697->8728679687023506507 -916146019547215697->-3071007664044404914 -916146019547215697->-3173488049594186536 4484248535635876872 chip.bam2ta_ctl 954063248145531556 TAG-ALIGN 4484248535635876872->954063248145531556 954063248145531556->-6417019141101352873 -4582732256773912862 Filt/deduped BAM -4582732256773912862->4484248535635876872 -4582732256773912862->-3071007664044404914 -4582732256773912862->-3173488049594186536 -203603836804623468 chip.bam2ta_ctl -3756174228771415517 TAG-ALIGN -203603836804623468->-3756174228771415517 -3756174228771415517->-6417019141101352873 602094049376767142 Filt/deduped BAM 602094049376767142->-203603836804623468 602094049376767142->-3071007664044404914 602094049376767142->-3173488049594186536 654933481390159801 chip.bam2ta_ctl 5299024391500303688 TAG-ALIGN 654933481390159801->5299024391500303688 5299024391500303688->-6417019141101352873 -1528962764970689079 Filt/deduped BAM -1528962764970689079->654933481390159801 -1528962764970689079->-3071007664044404914 -1528962764970689079->-3173488049594186536 -3646264978753097623 chip.bam2ta_ctl -673518512487409683 TAG-ALIGN -3646264978753097623->-673518512487409683 -673518512487409683->-6417019141101352873 -7437844149059434297 Filt/deduped BAM -7437844149059434297->-3646264978753097623 -7437844149059434297->-3071007664044404914 -7437844149059434297->-3173488049594186536 6695941467326080807 chip.bam2ta_ctl -2682733861036700308 TAG-ALIGN 6695941467326080807->-2682733861036700308 -2682733861036700308->-6417019141101352873 7975132930136549433 Filt/deduped BAM 7975132930136549433->6695941467326080807 7975132930136549433->-3071007664044404914 7975132930136549433->-3173488049594186536 6819887517259626649 chip.bam2ta_ctl -4340095586467635305 TAG-ALIGN 6819887517259626649->-4340095586467635305 -4340095586467635305->-6417019141101352873 -1626852189239101397 Filt/deduped BAM -1626852189239101397->6819887517259626649 -1626852189239101397->-3071007664044404914 -1626852189239101397->-3173488049594186536 -6308659197621516837 chip.bam2ta_ctl -440688327623732958 TAG-ALIGN -6308659197621516837->-440688327623732958 -440688327623732958->-6417019141101352873 -1982354290407266539 Filt/deduped BAM -1982354290407266539->-6308659197621516837 -1982354290407266539->-3071007664044404914 -1982354290407266539->-3173488049594186536 9005909222607679999 chip.bam2ta_ctl -7823715972305154797 TAG-ALIGN 9005909222607679999->-7823715972305154797 -7823715972305154797->-6417019141101352873 -3372937407707716757 Filt/deduped BAM -3372937407707716757->9005909222607679999 -3372937407707716757->-3071007664044404914 -3372937407707716757->-3173488049594186536 4325363935043616847 chip.bam2ta_ctl -1932676865144946833 TAG-ALIGN 4325363935043616847->-1932676865144946833 -1932676865144946833->-6417019141101352873 -714085368421399848 Filt/deduped BAM -714085368421399848->4325363935043616847 -714085368421399848->-3071007664044404914 -714085368421399848->-3173488049594186536 5814015768049626408 chip.bam2ta_ctl -9004908916021697014 TAG-ALIGN 5814015768049626408->-9004908916021697014 -9004908916021697014->-6417019141101352873 290824924082629805 Filt/deduped BAM 290824924082629805->5814015768049626408 290824924082629805->-3071007664044404914 290824924082629805->-3173488049594186536 -119887909347033514 chip.bam2ta_ctl 314682256858673039 TAG-ALIGN -119887909347033514->314682256858673039 314682256858673039->-6417019141101352873 3692223093664658079 Filt/deduped BAM 3692223093664658079->-119887909347033514 3692223093664658079->-3071007664044404914 3692223093664658079->-3173488049594186536 725177817240903901 chip.bam2ta_ctl 2105647304960997392 TAG-ALIGN 725177817240903901->2105647304960997392 2105647304960997392->-6417019141101352873 1392443567214437156 Filt/deduped BAM 1392443567214437156->725177817240903901 1392443567214437156->-3071007664044404914 1392443567214437156->-3173488049594186536 8392981729264273674 chip.bam2ta_ctl 959843457652996661 TAG-ALIGN 8392981729264273674->959843457652996661 959843457652996661->-6417019141101352873 -2732162672454092765 Filt/deduped BAM -2732162672454092765->8392981729264273674 -2732162672454092765->-3071007664044404914 -2732162672454092765->-3173488049594186536 -5495327391583194415 chip.bam2ta_ctl -8904459390281217650 TAG-ALIGN -5495327391583194415->-8904459390281217650 -8904459390281217650->-6417019141101352873 7972274495281070048 Filt/deduped BAM 7972274495281070048->-5495327391583194415 7972274495281070048->-3071007664044404914 7972274495281070048->-3173488049594186536 2537501278378608380 chip.bam2ta_ctl 3143206268856025890 TAG-ALIGN 2537501278378608380->3143206268856025890 3143206268856025890->-6417019141101352873 3864723638951739778 Filt/deduped BAM 3864723638951739778->2537501278378608380 3864723638951739778->-3071007664044404914 3864723638951739778->-3173488049594186536 2886431069303435222 chip.bam2ta_ctl -4313495594604512963 TAG-ALIGN 2886431069303435222->-4313495594604512963 -4313495594604512963->-6417019141101352873 4555645033736245172 Filt/deduped BAM 4555645033736245172->2886431069303435222 4555645033736245172->-3071007664044404914 4555645033736245172->-3173488049594186536 -952083293598500878 chip.bam2ta_ctl -2308447759553604107 TAG-ALIGN -952083293598500878->-2308447759553604107 -2308447759553604107->-6417019141101352873 8961296618297233247 Filt/deduped BAM 8961296618297233247->-952083293598500878 8961296618297233247->-3071007664044404914 8961296618297233247->-3173488049594186536 507039383122072518 chip.bam2ta_ctl -7733812189045455932 TAG-ALIGN 507039383122072518->-7733812189045455932 -7733812189045455932->-6417019141101352873 588228811754292905 Filt/deduped BAM 588228811754292905->507039383122072518 588228811754292905->-3071007664044404914 588228811754292905->-3173488049594186536 3656225156717893023 chip.bam2ta_ctl -2823640507710186394 TAG-ALIGN 3656225156717893023->-2823640507710186394 -2823640507710186394->-6417019141101352873 8847331602261294409 Filt/deduped BAM 8847331602261294409->3656225156717893023 8847331602261294409->-3071007664044404914 8847331602261294409->-3173488049594186536 9129792236589530383 chip.bam2ta_ctl -1552522882787534290 TAG-ALIGN 9129792236589530383->-1552522882787534290 -1552522882787534290->-6417019141101352873 4475799193213997320 Filt/deduped BAM 4475799193213997320->9129792236589530383 4475799193213997320->-3071007664044404914 4475799193213997320->-3173488049594186536 2782608471361453479 chip.bam2ta_ctl 8427575345347798957 TAG-ALIGN 2782608471361453479->8427575345347798957 8427575345347798957->-6417019141101352873 5341337108135690754 Filt/deduped BAM 5341337108135690754->2782608471361453479 5341337108135690754->-3071007664044404914 5341337108135690754->-3173488049594186536 -2540129304114216923 IDR Plot ppr -7805296578345354622->-2540129304114216923 8296145002110058219 IDR Peak ppr -7805296578345354622->8296145002110058219 8296145002110058219->7687088587787795844 8506047680226052376 IDR Plot rep1_vs_rep2 2398217551280139244->8506047680226052376 7065371331725875177 IDR NPeak rep1_vs_rep2 2398217551280139244->7065371331725875177 7065371331725875177->7687088587787795844 -912504826588475948 Overlap Peak rep1_vs_rep2 -8381640235130599653->-912504826588475948 -912504826588475948->-5097577121293584260 -6512149781496845944 Overlap Peak optimal -5097577121293584260->-6512149781496845944 1156188755898709912 Overlap reproducibility -5097577121293584260->1156188755898709912 -3545172173641883015 IDR Peak optimal 7687088587787795844->-3545172173641883015 -8682557873821356663 IDR reproducibility 7687088587787795844->-8682557873821356663 -6841274631497031657 Overlap Peak ppr 3374908679321823492->-6841274631497031657 -6841274631497031657->-5097577121293584260 -5217728651871247609 JSD Plot -3071007664044404914->-5217728651871247609 -3173488049594186536->-5217728651871247609

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UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/a896aced-8190-414c-b26e-643a08abb2ba/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.476M.pval.signal.bigwig?Expires=1601337839&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=IcrEMtAmZqdyQdZkI8GNAZ6TKEz30P2MVLTs54QqLP50EPaDGz2ovgQ4nAvgNQbVHiYE8rpi2IqxnrUbiBHRoG%2FW38RY920yZoTzV2%2FKhGnw1uv2A9CZTPFBdviiYtKqu26Qo7vUPL3SJjeuWwCGBspTAIaWnmhVC0D6sMoyvuYwiZiB0FRru9OWg9SBMcMLMrQvbtRG6CFpVlxr%2BGinjPe3VIlZED8j3qmzkd5dW2DeS7tHyll%2F5QK5ngIoIODxevyhrtdDTdqcI44HAnLwa7xSB%2FwTAZ4tHVlCH9cYav%2Fvtfde1qu1s5GFphnfh%2FRb697Hpggoqs%2FbJGXA5JK13Q%3D%3D"
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